Array 1 109851-108235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABG01000055.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3265_R1 NODE_13_length_178864_cov_1.96837_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109850 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 109789 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 109728 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 109667 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 109606 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 109545 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 109484 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 109423 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 109362 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 109301 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 109240 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 109179 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 109118 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 109057 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 108996 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 108935 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 108874 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108813 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 108752 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 108691 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 108630 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 108569 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 108508 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 108447 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108386 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 108325 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108264 29 100.0 0 ............................. | A [108237] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127706-126520 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABG01000055.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3265_R1 NODE_13_length_178864_cov_1.96837_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127705 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 127644 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 127583 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 127522 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 127461 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 127400 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 127339 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 127278 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 127217 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 127156 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 127095 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 127034 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 126973 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 126912 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 126851 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 126790 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 126729 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 126668 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 126607 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 126547 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //