Array 1 170650-170442 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFY01000002.1 Pasteurella multocida strain 3384PM isolate swab isolate 1 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170649 28 100.0 32 ............................ TATTAGTAAGTTAATTGCTTAACTTGTTGTTT 170589 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 170529 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 170469 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94397-91307 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFY01000027.1 Pasteurella multocida strain 3384PM isolate swab isolate 1 contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94396 28 100.0 32 ............................ GTCAGAGCTATGCTGTTTGTAACTACGGAAGA 94336 28 100.0 32 ............................ GTCGTTCATGATTGTTGACTTTGTGTTATCAG 94276 28 100.0 32 ............................ ACATTAGAGAGGGTATGCAGTATAACCCTCAA 94216 28 100.0 32 ............................ ATCAGTCTTTTTAACTTGTCAACAATTATTTT 94156 28 100.0 32 ............................ ATCGTTCATGATTGTTGACTTTGTGTTATCAG 94096 28 100.0 32 ............................ ACCACAAGCGTACTTGAGTCTTGTTGAATGGC 94036 28 100.0 32 ............................ TTTTAGACCCTTATATGTTGGTTCGCCAAGAA 93976 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 93916 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 93855 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 93795 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 93735 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 93675 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 93615 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93555 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93494 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93434 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93374 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93314 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93254 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93194 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93134 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93074 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 93014 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92954 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92894 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92834 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92774 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92714 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92654 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92594 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92534 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92474 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92414 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92354 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92294 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92234 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92174 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92113 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92053 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 91993 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91933 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91873 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91813 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91753 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91693 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91633 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91573 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91513 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91453 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91393 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91333 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //