Array 1 58105-57100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEXF010000008.1 Escherichia coli strain BfR-EC-17663 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58104 29 100.0 32 ............................. GGGGGGCAATAATATGTGCGGCGGATCACCAG 58043 29 100.0 32 ............................. TCGGAAAAATGGCTGGCCTCAACGGTGAAAAC 57982 29 100.0 32 ............................. CCAGGGTGAAACTTTTCGCTGACGTAAATAAA 57921 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 57860 29 100.0 32 ............................. TGATGGGCGAATACAAGCGCTGGCGCAACGAG 57799 29 96.6 32 ............................C GGCATTCTTAACCGGCGCAACAAGGGGGGCGC 57738 29 100.0 32 ............................. GTTAACTCCAGGTGGCGCGGCAGTGTTCAGAA 57677 29 100.0 32 ............................. GCTGGCTGATTCAGCGTGACGGGGCGAAATAT 57616 29 100.0 32 ............................. CCTGCGGTATAGCGGCTCTTTTTTATGCCCCT 57555 29 100.0 32 ............................. AAATGATAATGCTGGCGTGTGGGCGTGCCGGG 57494 29 100.0 32 ............................. AATAACACTAATTTTTTACACGGTATTCGCAC 57433 29 100.0 32 ............................. CTCTGCTCGGAGATTGCCAGTGAGTGAAAACG 57372 29 100.0 32 ............................. GAATTGAACGTCACCGGCACGGTGCCTTTTCG 57311 29 100.0 32 ............................. CTCATATTCGGATTGATCGTGTGTTTCGGTTT 57250 29 96.6 32 ............................T GCGTATATCTGTTGATGCGCACGGCGTGGCGG 57189 29 100.0 32 ............................. AATGATTTAATACCAGACGCAGAGTGCCACAC 57128 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGTGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAACGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 85042-84159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEXF010000008.1 Escherichia coli strain BfR-EC-17663 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85041 29 100.0 32 ............................. AAATTTATCGAGATCGGCAGGGGTTACTGACA 84980 29 100.0 32 ............................. GCCGTTAATCCGGACTGCCAGCGAATAACGCT 84919 29 100.0 32 ............................. CAACATATTTAAACGATTTAAGCCAGGCATAT 84858 29 100.0 32 ............................. GGATTCATCACGCGGTTATCCGGGGGCCGTTA 84797 29 100.0 32 ............................. GTGGTTGCGGGGTTATCGGTGGTAGTCACAAT 84736 29 100.0 32 ............................. TTTGTTGTGATGCCAATTACAATACGTGATGC 84675 29 100.0 32 ............................. CTCCAGCTCGATATCACACGACGCTATATCAG 84614 29 100.0 32 ............................. GAAACAGCGCCCGCCGGTGCTGCGTTACCGTG 84553 29 100.0 32 ............................. CCAACAAACTCATTTGCACTGGATTCGTGGAT 84492 29 100.0 32 ............................. ACCGGCGCAATTGTTTTTCAGCAGCACCCGGC 84431 29 100.0 32 ............................. TATTTTCTTTGTTGCGGTAGGCAATATCGCCA 84370 29 100.0 32 ............................. GTATTTTGTCACGACCAGCACGAGGCCGAATA 84309 29 96.6 32 .............C............... CCCCAACTCATGCCCACATGAAAAACGTTGAC 84248 29 96.6 32 .............C............... CCGCAAAAGGTATTATTTTTATCCGTCAGTAC 84187 29 93.1 0 .............C..............A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GAGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCACTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGAAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCTGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //