Array 1 159019-156184 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQB01000009.1 Salmonella enterica subsp. arizonae serovar 50:r:z strain NY_FSL S10-1447 NODE_9_length_167651_cov_21.1365_ID_5878, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159018 29 100.0 32 ............................. ATTTCATCGTGCAGGGTAACGCTAATCGGCAC 158957 29 100.0 32 ............................. GACGAATTAACTGCTGCACGTATCGATCGTGA 158896 29 100.0 32 ............................. AGTGGAAACAGCAGATATTCAACGCCCAGATC 158835 29 100.0 32 ............................. CTAATCGTCAGGCAGATCAGGACTGGGAGGAG 158774 29 100.0 32 ............................. AAGAGGCGGTGGCCGAAAAACTCAGCCATGAG 158713 29 96.6 32 ............................A CTGGTTACATCAGTTGGCGTTAAGAATTGCGC 158652 29 100.0 32 ............................. GCGATATTGCAGGCGCGATACTGTGCGCCATT 158591 29 100.0 32 ............................. ACGCCATCGCCCGTTATGACCTGACACCGGCA 158530 29 100.0 32 ............................. TGAACCGTGACAACTGGGAGAAGGCAAAAGCG 158469 29 100.0 32 ............................. TTTTTCTCCTTAGTCCTTAAAGCAGGTATCCA 158408 29 100.0 32 ............................. GTTTCCGGTTCTGGGGCAACCGCTCAACTGAT 158347 29 100.0 32 ............................. TTGGGGAGTTACATCAGCAGGGATACACCGCC 158286 29 100.0 32 ............................. CCGGCTCTCAGCAGGGTGACAATCCGTTTGTG 158225 29 100.0 32 ............................. CGGCGAACCCCACGCTGCGGTAGATTTGCCCG 158164 29 100.0 32 ............................. GCCGGGGTGATAACAGATGCAGTGGGAAGGAG 158103 29 100.0 32 ............................. ACATACCAACAGTTCTGCGTCGATCCTCCACA 158042 29 100.0 32 ............................. CACAGGCAGCCGGTGAGGTTATAGCGCTGGTA 157981 29 100.0 32 ............................. GTAAACAGGGTAATACCCTGATTTATTCTGAA 157920 29 100.0 32 ............................. TGGCGCTGATCGATCGCGTCATCGGCGTTAAA 157859 29 100.0 32 ............................. GAGATTCTCAGTGTAGAGCAGGTTGATTACTG 157798 29 100.0 32 ............................. GGCGGTAATCCGTCAAAAGTGGCCCCAAAGGT 157737 29 100.0 32 ............................. CACTGCGTGAACCCGGATTGGTCATCGGTCTG 157676 29 100.0 32 ............................. GAGGGGTCAATTATTCTGGTTGCTCAAATGTT 157615 29 96.6 32 ...C......................... CCCCACGCAACAACGTTCTCAGTAAAATCGGA 157554 29 100.0 32 ............................. GAATAAGAGCTATCAACCCACGGCGTTACAGG 157493 29 100.0 32 ............................. CAAATTTGCATTATTGCGAATGACGTCTTGAG 157432 29 100.0 32 ............................. CCGCGATAGCTTCCACAAGTGCTGTTTGTGGT 157371 29 100.0 32 ............................. GTGACATCATCTGACGTCATTCTGGCGTTGTC 157310 29 100.0 32 ............................. GCAGATATCATCAGGCGACTGGAAAATGAACT 157249 29 100.0 32 ............................. GTTTTGTTTTCCTGGCTCCGCAGCGCCAGCGC 157188 29 96.6 32 ............T................ CCATGGGAAACGACCCTGATTAATACCGGTGG 157127 29 100.0 32 ............................. TATCAGGTAGCACAGCGAACAAGAATACCCAA 157066 29 100.0 32 ............................. ATTTCCGGAGAGCGCAGGGCGAATAATGCCAA 157005 29 100.0 32 ............................. CCGTTCTTCTTCCGGTATGGCGTCCAGACGCG 156944 29 100.0 32 ............................. GTGAAACACGGCATCACGCTTTCAGGCAGTGA 156883 29 100.0 32 ............................. AGGGTACACCGTTCCGTTACAGCTTCAGTGCG 156822 29 100.0 32 ............................. TCGCCGCGGGTAGAAATTTACAGCATTGATGA 156761 29 100.0 32 ............................. GAAAGATGCCGGCTGCCTGCGGCCAGTACATC 156700 29 96.6 32 ...........A................. TTACCGATAGACAGGCTCGCACTCGCGCAGTT 156639 29 100.0 32 ............................. GCCAACAACATTGAGCCAGCTATCTCGGCGCA 156578 29 100.0 32 ............................. TTATTTCTTCGTCTGTTAGTTTGTTATTTTTC 156517 29 100.0 32 ............................. TTGCCTTACATGGACAACGTTGTGTGGAAGAG 156456 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 156395 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 156334 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 156273 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 156212 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //