Array 1 94327-93750 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFVU01000120.1 Escherichia coli strain KK-NP003 sequence120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94326 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 94265 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 94204 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 94143 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 94082 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94021 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 93961 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 93900 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 93839 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 93778 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTAAAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1453-265 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFVU01000139.1 Escherichia coli strain KK-NP003 sequence139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1452 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 1391 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 1330 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1269 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 1208 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 1147 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 1086 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 1025 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 964 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 903 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 842 29 100.0 32 ............................. GGGTATCGCACTGCAGCAGATGTTCCGGGGCC 781 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 720 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 659 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 598 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 537 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 476 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 415 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 354 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 293 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //