Array 1 613-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZG010000534.1 Clostridium botulinum C/D strain IZSVe-TV_5363_4_13 4000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 612 30 100.0 36 .............................. GAAGAAAACTCACAGTTTTTAATAAAATCTATAATT 546 30 100.0 37 .............................. ACGTCTTCTAATAGTCCTTCAAATTCTATTGGCATAA 479 30 100.0 36 .............................. ATCTTTTTGTTTTTCTTCCGATCTTTGTACTTACTG 413 30 100.0 35 .............................. TATTCTAACTTCACATCCTTTTAAAGGTCGCCATT 348 30 100.0 36 .............................. TGGGAAAAGTTACGCACGAAACTTCTTTAATGTCTA 282 30 100.0 35 .............................. TTTCCAGTGAGCAATAGAAAACAGTACCTTTTCTG 217 30 100.0 36 .............................. CTTGATTTATTGAAACCATATTGGGAAATGGCGAAC 151 30 100.0 34 .............................. AGAAAAATAACTTCTAAACTTAATTTCAATATAT 87 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AGATAATTTAAAGGGGTTTAACGTAATTACTTTA # Right flank : TTCAATTAAAATAAGGGCATTTCGAACATCTACTATGGTTGAACATTAACATTAGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1752-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZG010000372.1 Clostridium botulinum C/D strain IZSVe-TV_5363_4_13 4187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1751 30 100.0 37 .............................. TTAGTAGCTTTATCTTTATCTACTGCACTAGGTTCAG 1684 30 100.0 36 .............................. CCTTGTAATGTTTTTACCTCATTCTTTAAAGATTCT 1618 30 100.0 35 .............................. CCAATTGAACTCATGAAAGAAATTATGTTAAATGG 1553 30 100.0 36 .............................. AGTAGTGGTGGTATCGATAGAATTGATTCTATTTGT 1487 30 100.0 36 .............................. GTATTAGAGTTATTGTCGTGCCTTTTACTACGTTTT 1421 30 100.0 35 .............................. AGCGTAGATACAACTTTAATTTACGCAGAATTAGA 1356 30 100.0 36 .............................. ATTTTTAGTTCTGCACAAACGAGTGGAATTATAATT 1290 30 100.0 36 .............................. TAGTGTCTAACTACTCTATTTATAGATATATTGTAC 1224 30 100.0 37 .............................. TAATTAAATTATTTAACAAATTGTCTTTTGTATTACT 1157 30 100.0 37 .............................. TTACAACAAATGTACCATCTTCAAAATCCATTTCAAC 1090 30 100.0 36 .............................. TCAAAAACAGTACTCAATCCGGATTTTTCTATAATT 1024 30 100.0 37 .............................. TTTAATCACTCCTTTCTAAACTGGTCGAATTCGACCA 957 30 100.0 35 .............................. AGAAAAATGGACAAGTCTTTGGCAAAGTTGTTTAA 892 30 100.0 37 .............................. TGATATATTAGCATAAGTCGTCCCGCGAATTATAACT 825 30 100.0 34 .............................. TTGCCCTCTATGAGATAATTATTGTCTTTAACTG 761 30 100.0 35 .............................. AATAGTACACTAAAGGCGTTACTATCTGTTGCATT 696 30 100.0 37 .............................. TGTCATAATCGCAAAATAACACAATAACCACATCCCC 629 30 100.0 35 .............................. TAACCAGCAGTTTCCCAATATGGCGGATCACAGAA 564 30 100.0 34 .............................. CTATCCTCTGGTATCTTATCTATATTTAAATTAT 500 30 100.0 35 .............................. AACTTCAAGGGGCAAATTTTTGTAAAGTGAGGTTG 435 30 100.0 36 .............................. TTGCGTGCTTATGGTTAATAAAAGTTATTTTACAGA 369 30 100.0 37 .............................. GAACCTGTACCATATAGTATTTTTAAATTTCTAGTTA 302 30 100.0 35 .............................. AAGTTTTCTATAAAAGTATGTTCAGCACTTGAATT 237 30 100.0 36 .............................. AAGGTAACTACAAAAGACCCCGTAGTCTGGTATATT 171 30 100.0 35 .............................. TTCCATTTTGTTCTAGCATCTGCAATCGCTACATA 106 30 100.0 35 .............................. TACAAATGCAATACAGAATAGTTATAAATATTTTT 41 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAGTGTTGATTTTACTGGTTTTCTATGTAACTTAAACTGAAAAAAATAAGTTGTTAAAATTGGTTGGTAAAAAATTAATGAAAGTGTTTATTTTCAATAGGTTTAGGGGTATAATAGAAACAAGGAATGGCTATTTTACTAT # Right flank : TAAAGATAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 5373-6654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZG010000108.1 Clostridium botulinum C/D strain IZSVe-TV_5363_4_13 3770, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5373 30 100.0 37 .............................. GCCTATATCGAATCGAATGAAGAGACTAAAAAGTTAG 5440 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 5505 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 5571 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 5638 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 5704 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 5770 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 5834 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 5901 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 5967 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 6033 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 6098 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 6164 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 6230 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 6296 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 6361 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 6428 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 6494 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 6560 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 6625 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CCGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 55-543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZG010000537.1 Clostridium botulinum C/D strain IZSVe-TV_5363_4_13 635, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 55 30 100.0 36 .............................. ATTAAAAGTTAATATATTTTTTAATTTAATTTTATT 121 30 100.0 36 .............................. ATTCTAAGTATCCATAAAGCTTGTTGAGCCACATAC 187 30 100.0 35 .............................. AATGAAATAGGCAATTCATAATCTACAGTGTTTAT 252 30 100.0 35 .............................. ACGTTTGAATGTGCTAAAATATAATCTTCAACTGC 317 30 100.0 36 .............................. CATGAAACAATAGCTGAAAATCAAGAGAGGGAACAC 383 30 100.0 35 .............................. AAAATAAGACATGCACTTCTTTTGCCATCTTTTGT 448 30 100.0 36 .............................. CACCTTCTTTCTCTTTTGGTATCCATATTTATTCTT 514 30 96.7 0 ...............T.............. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 99.6 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTAGATGTATTTAAATAATTTTATATACATTTTTAAAATTTTACTAAAAAG # Right flank : GCTCTTGCTTTAATTTTTCCTCAGAAATATCTTTATTAAAGAAAGTCAACCATCTTTGAAGTCTATCTTCTTTTAAATTCTTTTCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 64-1012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZG010000476.1 Clostridium botulinum C/D strain IZSVe-TV_5363_4_13 673, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 64 30 100.0 36 .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 130 30 100.0 36 .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 196 30 100.0 36 .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 262 30 100.0 36 .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 328 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 393 30 100.0 35 .............................. ATTAGTTTACCACACTTTGGACACATTCTCATTAG 458 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 524 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 588 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 654 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 720 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 785 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 852 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 916 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 983 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 36 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : ATAGATAACAAGATTTGTTTTTAAATTTAAGTATATTCCATTTTGATGAAAAACAAGCAATACA # Right flank : AAAGTAGTTATTTTGAAACTTATAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //