Array 1 420348-422389 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJW01000005.1 Salmonella sp. zj-f94 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420348 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 420409 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 420470 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 420531 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 420593 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 420654 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 420715 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 420776 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 420837 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 420898 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 420959 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 421020 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 421081 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 421142 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 421203 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 421264 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 421325 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 421386 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 421447 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 421508 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 421569 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 421630 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 421691 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 421752 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 421813 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 421874 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 421935 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 421996 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 422057 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 422118 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 422179 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 422240 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 422301 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 422362 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 97.6 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440022-442003 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJW01000005.1 Salmonella sp. zj-f94 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440022 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 440083 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 440144 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 440205 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 440266 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 440327 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 440388 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 440449 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 440510 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 440571 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 440632 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 440693 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 440754 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 440815 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 440876 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 440937 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 440998 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 441059 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 441120 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 441181 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 441242 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441303 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 441364 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 441425 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 441486 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 441547 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 441608 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 441669 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 441730 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 441791 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 441852 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 441913 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 441974 29 100.0 0 ............................. | A [442001] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //