Array 1 5685-5452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTW01000020.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================== ================== 5684 23 100.0 29 ....................... CACAAGTACCCGCAATCCGTACCGTTTCT 5632 23 95.7 30 .....................A. TACGGATTTCAGGCCAAATGTACCGCTTTC 5579 23 100.0 30 ....................... CACAAACGAGCCAAAATCCGTAGCGCCAAC 5526 23 95.7 29 ...................G... TACGAATAGGGACCATCCGTACCGGATTT 5474 23 95.7 0 ...................G... | ========== ====== ====== ====== ======================= ============================== ================== 5 23 97.4 30 GTACCACCGTGGTACAAACACGA # Left flank : CTCCATCACATCCCCGCGAACCTCGTTTTCCCTAGAAAACAAGCCAAAACCGCCATGTGAAGAAAATGAAAGCGTTTGCCGCAACGAGCGCAACACACCCCCAACCTGTGCACCACCATCACGCTGATTGCCTCCCAATAGCCAACGATTCCTTCTCATTCCTATGCGCCCCCACTCCTGCCTCTTCCCAATCGACCTCTTTCCCGTACCAGACTCTTCCCTACCTCGGCACTGTCCGATCCTTGCCCTTCCCGACCCGCCCTTTCCTCCGCGTTTATCTGTTTCTGCCGATTCCTTGTCCATTTTTATTTCTGACCATTTCCCCTCACCCCTTCTCATTCCTGACCTACCCCTATCTACCCCGGCCTCACCACTTCTCGTTTCCAACCAATCCCATCTCATTCCATCTACTCATACGGGCGAAGTTGAAGTGTGGGATGGAACAATACGCCGACTTGCGACTCCTATGTGCAGACGGCGCCCCTAGGTGTAGCGTCTTC # Right flank : TACACGCACGAGCCATATCCGCAGCGAATCCACGTCACAGCAATGCAAACGCAATACAGAAGCAAGCCAAACGTGAGGCCCCTTACCAGTCCAGCACAACAAACCTCCGCTTTGGCTACGGGAACTGACGTCTACTTGCCGGCCCAGCGCAACAGACCACCATTGTGGTGGCCAAGTGCGGCCTGTTCTGACCGCAACGGATTACAACAGCCATAGTTCCACGCCCAGTTGCTCACTCCTATATCCACTATCCAGCCGCTGCCCAAACCCACCTTGACGCATACGACGCACACACGGATTGCATATCGAATCGCCCGCCCCTACTCTTTCCATCCCTCCCACCAAGTCGAACACGCTTTGGCCCGCGGCACGCACCGCATGTCGCGCCACCCCCATCTGGCGGTCGTTGTCGTTAGTATGGTGGCCAATCGCACAGTGATGCCGAACAACAGCACCGCCATGCAGGCCAGGTGCGGCGGCACTTGGTGCATCGCCGCACC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCACCGTGGTACAAACACGA # Alternate repeat : GTACCACCGTGGTACAAACGCGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 158032-158212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTW01000004.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================== ================== 158032 23 100.0 29 ....................... AGTCATCGAGGCGTGGAATTGTATGTTTT 158084 23 100.0 30 ....................... CTACGGATTTCGCCCAATTTTGCTCGCGTC 158137 23 87.0 30 .................GA.G.. TGCATTTTCATCCGGAATCCGTATCGCGCC 158190 23 91.3 0 ..................A.G.. | ========== ====== ====== ====== ======================= ============================== ================== 4 23 94.6 30 TGTACCACCGTGGTACAACCACG # Left flank : AGTCATCAAGAATTACGAACAGTTCATGATGGACTACGCTGATTATGCCGAAATGCTCAACAGTGCGGAAGGCATTCCGGCCGACAAGCTGGAAGGGTATACCCAGTGGCTGGCGCGCTTTGATGACATTCAGGCGCAGTTCGATGCCGTTTCGGACACGAAGCTCACTCCTGAGCAGGAAGCCTATTTCGATGATGTCATTGATCGCGTCAACAAACGCATGATTGAAGCCACAGGCACGACAGCTGTGGCGATCCCGCGTTCCGCCGAGGAGGCTGAGAAGCTGCAGGCCCAACGTGAGGAAGAAGCCGAAAAGTCCCGCAACCAGCTCACTGATGCGCTGAAGGATGCCGAGGATTCCGATTCGGGCGATTCTGCTGATTCATCCGATTCCTCGCAGGAATCCAAGTGATTCGCGCCGCGGGTGGCTCGTGATTACTTCGTGATAGCTGCTTGATTGCCGCTCGATTGCCTCTTGAACGCTGAAGATGACTCGTGGT # Right flank : GAGTCATCTGGTGACGGATCCGCTGGAATCCGCTATCCGGCAATGCAAAAAACCGCCCGAATCCGCGTGGAATCGGGCGGCTTTGGCGAAGCGCGCGCGAGTTTAGGCGCGGAAGTAGTCCACGCCGGCTTCGAACAGTGGCTGGTAGGTGTTGCCTGGCACGTTCAGGTACAGGCCGTTGCCTGAGCGTTCCGAGTGGCCCATCTTGCCGAAGATGCGGCCGTCAGGGCTCGTGATGCCTTCAATCGCGAGCATCGAGCCGTTCGGGTTCACGTCGAGGCTCATGCCTGGCACGCCCTGCTCGTCCACATACTGCGTGGCCACCTGACCATGCTCAACGAGCGAGGAGAGCATTTCAGGCGACGCCACGAAACGCCCCTCACCATGCGAAATGGCTACCGTATGCACGTCACCGACCTGCGTGCGCGCCAGCCACGGCGACAGGTCCGAGGCCACACGCGTGCGCACAAGTCGGCTCTGGTGGCGGCCAATGCGGTTGA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTACCACCGTGGTACAACCACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 12674-12909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTW01000014.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================== ================== 12674 26 88.5 26 ...................G.A.C.. AGATAGGGGCAAAACGTACCGCTTCT 12726 26 92.3 27 .......G.........C........ GGATTTCGAGCAAAAAGTAGCGTCAAT 12779 26 96.2 27 .................C........ AAACGAGCCAAAATCCGTAGCGCCAAC 12832 26 100.0 26 .......................... AAATCCAACCCATCCGTACCGCATTC 12884 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================== ================== 5 26 95.4 27 GTACCACCGTGGTACAAACACGATAC # Left flank : CAAGCCAAACAGCACGGCGACGTGCCGATTGGGGCGTGCGTGCTCGACGCGGGCGGCCGTGTGATCGGGCGCGGACACAACATGCGCGAACGCAATCTCGATCCGTTGGCGCACGCCGAGATTGAAGCGATGCGTGAGGCCGCGGCGACGCTCGGAAGCTGGAACCTCGAAGATTGCACGCTCGTGGTCACGCTCGAACCGTGCCCGATGTGCGCGGGCGCTTGCCTGCAAACGCATGTGGGGCGCATCGTGTTCGGTGCGTGGGATGCCAAACTCGGTGCCTGCGGGTCGGTCTGGGACCTGCCGCGTGACCCCCATATTGGCGCGCACCCCGAAGTCTACGGCGGCATCCGCGAATCCGAATGCGCCCAACTGCTCACCGCCTTCTTCCGCCTGCGCGGGTGATGCGGGGGCGGGGCGAATTGGAGGTGGGGTGAAGCGGAAAATCTGCCGTTTTGTCGACTTGTCGTGCGGTTGGGCGCTCCACCTGTATCGTTTCT # Right flank : CGGATTTCGAGCCGTTTATGAGTGCAAGGCAACGCGCGGGGCGCCGGCTGCTATCAGCTCACCAAAACGTGGCGTGAGCGGCACGGGGCAAACTGGCAGATAGGGCAAGCTGGCGGCTGCCGCAAGCCCAACAAGTGCGGAATTATTGGATTACGCCGGCGTTGGGGTCGGTGACGGTGCCCGCGTCGCCCGTGTTGCCTGCGTCACCACCGGGAGCGACCTGTTGGACTGGTTGCTGCGGCAGCTGAGCCTGCTGGTTCTGCAGCGCTTGCTGGTTCTGCAGCGCTTGCTGATTCTGCAACGCCTGCTGTTGGGCCAATGCTTGTTGCTGGGCCAATGCCTGCTGTTGCGCGGCAGCGGCGGCTGCGGCGGCGTTCGCGTTGGCGAGGTCGGTGATTGAGGTTTGCACAGCATCATTGGCCTTGGTCAGCGCATCTTTGGCTTGTTTGACCTGATCAGCCGTCAGTTCCTCAGAACCGGCAAGCTTCTTGGCATCGTCG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.20, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCACCGTGGTACAAACACGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 4313-3798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTW01000009.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4312 28 100.0 33 ............................ CGCGCCAATCAACTGTTATCTTGACGATTTCAA 4251 28 100.0 33 ............................ TGCCACGTTCAGCCTGCGCACCGCGACGGGTGA 4190 28 100.0 33 ............................ CACAAGCTCGGTGATTCGATACTCGCCAACGTT 4129 28 100.0 33 ............................ TTCATCCGCTGGGTAGCCGACCGCAGAAGCAAA 4068 28 100.0 33 ............................ CTGCATCGTGTTGAACGCGGGGAACACCTTGGA 4007 28 100.0 33 ............................ CAAACGCTTCGTGCAGCCCGCCGAGCCCGTGAA 3946 28 100.0 33 ............................ CGCGGCCACGCGGCGGTCATGTGCGGCGCGGAC 3885 28 100.0 32 ............................ CAACCACAGGTAGCGGAAACCCGAACCGTGCA 3825 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GGTAGCCCCGCACACGCGGGGATGATTC # Left flank : GCGGTGTTTGGCTATCGCGCCGCAATGCGCGCAACGTTTCGTGGTGTCGGATGGATTGACGGGTCGAAGGATGCGGCCGTGTTTGAGCGCTTGCCATTCAAGCGCCTGCTTGGTAGCAGCTATCGCACCGTCGGCGGCTTTCCTTGCCATGGTCGTTTTCGACAGGAACTTCGGTTTGAAGTCCTCGATGGCGATATTGTCATGGTCCTGCACAATGTGGCGCGCCCACTTGTTCGCCGTGTCCTGCCGTTGGCGTTGGACACGGCGTTGGATTTCAGCGGCGCGACGCTTGTTCTTCAGGTACCTGTTGGAGGGTTTCTTGCCTTTCGGGCGTCGTTCCTTGGCCATGCGTCGTTGCAGTCGGGCAAGTTCGAGGTGCGCTTTCCTGCCGTATTCGGGATGGGGCAGGTCGTATGCGCCGGTTTCGTCCACGATGCCGTTTCCGTCGATGGTCGCGCAGGTCATCAGCGTGCTTACACGAGTAGCAGCGACCCCCGTGA # Right flank : CTACCCCGCCATCCGAGAAACACGCATGCGGGCGCTCGAACAACTCGAACGCGAAGCGGCGAAAGCGGACCGCGTCGTAGAAGCCATCCTCAGCCAAGACGACGCCTTCAACGTGGAAACCCAGCGTCAACACCAGCGACACAAGCGCATCGCCTACGCGGCCCACGAAATCGCCGACAAATACAACTTCCTGCTCACCGACACGGAACAAGCCGAACAGGCCGACCTGCTCCTGCACTACAACATGCTCGACGACTGGAAGCATTGGCTCAGCTGCAAAACCGGCACCCACCCCAGCGCCCAGCGCGTCAAGGACGCGCTCAGCTGGCGCAGCAACGACAGCGTCATGCAGCAGGCAGCAAAGAACGCCCTGAAAACCCTCGACGGCATCACGGAACCCAGCAAAGCCATCATCATGCTCGCCGCAGGGCTTGCGGAGAGTGCACTGTCATGCTTATTTGGCCAGGAATGCTTCGACTTTCGCACCATCCGCGAAGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAGCCCCGCACACGCGGGGATGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 18343-14836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTW01000009.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18342 29 96.6 32 ............................T AGTGTCAGCTTCATCCCCCTGAGAGGCCTCAC 18281 29 100.0 32 ............................. CGCTGCCCCACGATGTCCCAGGAGTGTGCACT 18220 29 96.6 32 ............................T CGACGGCCGCGCCGTCGACGTAGATGCCTTCC 18159 29 100.0 32 ............................. CGGGGCAGTCCGGCGCGCTTGTTCATGGGAAC 18098 29 96.6 32 ............................G ACAGCCACACGTCCGGCGTGTCCCCATCATAG 18037 29 96.6 32 ............................T CAGGGGGCTGAAAATAGTGTCAGCTTGCATTC 17976 29 100.0 32 ............................. ACGCCGATCGTGCCCAGCCCAGGCTCATCCTC 17915 29 100.0 32 ............................. AGCCAGAGCCCTGTAGGCGCGACTGTGCACGG 17854 29 96.6 32 ............................T CGTGCACGTCTTGCTCGCTTCGCTCCACCCGC 17793 29 96.6 32 ............................T CCTGTACTGCTGGGATGGTCCGTCGCGTCGTA 17732 29 100.0 32 ............................. ACGACGCTCGTCGCGCAACTGCACGCCGTAGG 17671 29 100.0 32 ............................. ATGCGCTCGAACTGCGCGTGGACGCTGGTGCC 17610 29 100.0 32 ............................. GCGTCGCAGTCCTCCAGATAATGCTTTTTCGC 17549 29 100.0 32 ............................. CAAGACCCGCCGCGTCTGGCAGCGCACACTCG 17488 29 100.0 32 ............................. GCCGGTGGCTCATCGCGTTCGACGTAGCCCCA 17427 29 100.0 32 ............................. CAATCTTCTCTCTTGGCTTCCCGCTCGATCGT 17366 29 100.0 32 ............................. GCGCAGCCGTCCATCATGTCCAGCATGCTTTC 17305 29 96.6 32 ............................T CGCGTGGTACTCGTCGTACGTGCGGCCCTCGC 17244 29 100.0 32 ............................. CAAGACCCGCCGCGTCTGGCAGCGCACACTCG 17183 29 100.0 32 ............................. GCCGGTGGCTCATCGCGTTCGACGTAGCCCCA 17122 29 100.0 32 ............................. CAATCTTCTCTCTTGGCTTCCCGCTCGATCGT 17061 29 100.0 32 ............................. GCGCAGCCGTCCATCATGTCCAGCATGCTTTC 17000 29 96.6 32 ............................T CGCGTGGTACTCGTCGTACGTGCGGCCCTTGC 16939 29 100.0 32 ............................. GGGACGTGACCGCAATGTGCACGTGGACACCG 16878 29 100.0 32 ............................. GCCGGTGGCTCATCGCGTTCGACGTAGCCCCA 16817 29 100.0 32 ............................. CAATCTTCTCTCTTGGCTTCCCGCTCGATCGT 16756 29 100.0 32 ............................. GCGCAGCCGTCCATCATGTCCAGCATGCTTTC 16695 29 96.6 32 ............................T CGCGTGGTACTCGTCGTACGTGCGGCCCTTGC 16634 29 100.0 32 ............................. CGCAGCGACGACTACGCGCGAGCGCAACTCAC 16573 29 100.0 32 ............................. ACGTGAGAGACGTGCTCGCCATCGTACTCCCG 16512 29 100.0 32 ............................. CAAAACCGCGGAATGTTGCGCATAAGTCAAAC 16451 29 100.0 32 ............................. ACCACGCTCGTCGCGCAACTGCACGCCGTAGG 16390 29 100.0 32 ............................. ATGCGCTCGAACTGCGCGTGGACGCTGGTCCA 16329 29 100.0 32 ............................. TCAGGTTTGGTCGCGCCAATATTTTCAGGCAA 16268 29 96.6 32 ............................T GTTTCATGCGCAAAACTACGCTGTTTTTTCGT 16207 29 100.0 32 ............................. GGGACGTGACCGCAATGTGCACGTGGACATCG 16146 29 100.0 32 ............................. CAAAACCGCGGAATGTTGCGCATAAGTCAAAC 16085 29 100.0 32 ............................. ACGTGAGAGACGTGCTCGCCATCGTACTCATG 16024 29 96.6 32 ............................T GCGTGGCCTTCGACCTCGATCAGTGGTTCACG 15963 29 100.0 32 ............................. TGAGAATCACCGCCAAGGCCACCTACATCGAC 15902 29 100.0 32 ............................. AGTTCGGCATCAATGGCGTGCAGGCCATACTC 15841 29 100.0 32 ............................. GCAGTGAGAATCGCGTCGGCGGGAATGGTAAC 15780 29 100.0 32 ............................. ACGTGAGAGACGTGCTCGCCATCGTACTCATG 15719 29 96.6 32 ............................T GCGTGGCCTTCGACCTCGATCAGTGGTTCACG 15658 29 100.0 32 ............................. TGAGAATCACCGCCAAGGCCACCTACATCGAC 15597 29 100.0 32 ............................. AGTTCGGCATCAATGGCGTGCAGGCCATACTC 15536 29 100.0 32 ............................. GCAGTGAGAATCGCGTCGGCGGGAATGGTGAC 15475 29 100.0 32 ............................. CCGGCTTCCTGCAGTGCGGTGACGTCGTCGTC 15414 29 100.0 32 ............................. GAAGCAGAAACACTTACGAACGAAGACGAACC 15353 29 100.0 32 ............................. GCTCGATGGTTTGAGGCCAAGCACTGCGCATT 15292 29 100.0 32 ............................. GTCGCTTCCATCTGCCCGGTCTGATAGTTCTT 15231 29 100.0 32 ............................. GGAGCCGCGTCGTGGCTCGATGTGAGCATCCG 15170 29 100.0 32 ............................. AGCCGATGACGGAGCCGGCACAATTCGCGGCC 15109 29 96.6 32 ............................T CGCGATCCACGCGCTTGGGGGGTATGCTCTGT 15048 29 100.0 32 ............................. AGGTGTACGAAGTCACCGACAGCGTGAACCAG 14987 29 96.6 32 ............................T AATCGGGTGAACCCTCAGCTTCTGTGGTGTCG 14926 29 100.0 33 ............................. AAAGACTTCGCTTTCCAATGGCAAGAAGCGGAA 14864 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.1 32 GTGCTCCCCGCAAGCGCGGGGATGATCCC # Left flank : ATGGTCGTGATAGTGCTGACAGCCTGCCCTCCAGGACTACGCGGAGACTTGACACGCTGGCTGCTGGAAATATCTCCAGGAGTATTTGTAGGACACGTCAGCGCCCGCGTGCGAGACAAACTCTGGGAACGCATTGAAGAACTCGTTCGGGAAGGACGCGCCATCATGGTATACAGCGCCCGCAATGAACAGCACCTCGCGTTCCGAACTCTACGCAGTTCTTGGACTCCTGAAGATGAGGATGGGCTTACTTTGGTGCGGCGCCCTTTGGAAAACCGTGACAACAGTTTCTCCGGATCCCGTAAAGATGGATGGAGCAAAGCGTCACGTTATCATCGCGCTCGCAAGTTTGGAGGGCGGTGATGTTGCGTTGCTGGGGGTTTTCCATTCTATTTTGATTTCTGCCTATGCCGCATGAGTTTGCGTGCATCATATACAGACTAAAGGAAAACGATGATCAGCAGGATGTGGTATGGTTGGAACCACTGGGATTTTTTAGG # Right flank : TGTTAAAGTACACCTATGCGTCATCTAGTAGCAGGCATCGTAGCTCATGTGGATGCGGGCAAGACCACGCTATCCGAAGCGTTGCTGTATCGTGCGGGAGCCGTGCGCAAGCTTGGACGCGTGGACCATGGGGACGCGTTCCTGGACACCGACGCGATTGAGCGCGAGCGCGGTATCACGATTTTTACGGAGCCGGCTGTGTTGCAATTGGATGGCACTGCGGCTACCACAGAAATACACAATAATAAAGCCCAAACCGACCCCTCCGCACCGCAACATCCGCACGATCCTTTCCAAGACGACCCGCTGCAAGTGACATTGCTCGACACTCCCGGCCACACGGATTTCTCGGCGGAAATGGAGCGCGCGTTGACGGCGCTTGACTATGCAGTGCTCGTTGTCAGCGCGACGGACGGTATTCAGGGCCATACGGAAACGTTGTGGCGGCTGCTCAAGCGTTACGACGTTCCGACGTTCATTTTCGTCAACAAAATTGATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //