Array 1 491-59 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CFIH01000133.1 Neisseria meningitidis strain NM2808, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       490	    36	  94.4	    30	........G...A.......................	TTTTTGTATCCATTCCCAGCCGGAAATTAA	
       424	    36	 100.0	    30	....................................	CTTTAACTTTGACCGTGTGCAATCCAGTAA	
       358	    36	 100.0	    30	....................................	TTTGGTAAAGGTTTCTGTTGCGACCCGAAT	
       292	    36	 100.0	    30	....................................	AACGGCAACCCACTAAATTTTGCAAATGCT	
       226	    36	 100.0	    30	....................................	TACCCACGGCGGAAACCATTGCCACAAAAC	
       160	    36	  97.2	    30	........................T...........	TTTCTTTTTGTAATTGTTCTGCCTTTGTAA	
        94	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         7	    36	  98.8	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT
# Right flank :  TTTGCGTCTATGGTGTCCTTTGAGATGTCCAGTTGTAGCTCCCTTTCTCATTTCGCAGT

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [1-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.5   Confidence: HIGH] 

# Array family : NA
//