Array 1 82136-82591 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFQP01000030.1 Escherichia coli strain JML134 sequence030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82136 29 100.0 32 ............................. GCTGATGCGGTTCTATCACCACCACAAATTAT 82197 29 100.0 32 ............................. CAAATACGCGCGAGTGGCTAACCTGGAATCAT 82258 29 100.0 32 ............................. GCGCGGACGATAATCAGGGGCAGGCAGGGCAC 82319 29 100.0 32 ............................. AGGTATATGAAATTGAAGAAAGCTGCCCCATC 82380 29 100.0 32 ............................. GAAATCCAATATTAACGTGGTGTTTTCAAAAC 82441 29 100.0 32 ............................. CGTTTAGCTCCGCAATGCTGGATATCACTGAT 82502 29 96.6 32 ............T................ TATGGGAAACAGTAGCAACGGGCACACTGGCG 82563 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTAATCTCTTTCTAAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATAATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAGTTTTTTCTTTAGGATAATAGATTGTTTTTTAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 91140-90257 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFQP01000032.1 Escherichia coli strain JML134 sequence032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91139 29 100.0 32 ............................. GACTCAGTTTTTCCCTGCTGACCCTCCGAAGG 91078 29 100.0 32 ............................. CGCTACAGCTCCGGGCGAAACAGCGCGAAAAA 91017 29 100.0 32 ............................. ATCCAAAGATAGTCGCCCCGATTGCCAAATTG 90956 29 100.0 32 ............................. ACGGTATTGTTCAGATCCTGGCTTGCCAACAG 90895 29 100.0 32 ............................. GCGGCACTAACGTGATAATCACGATCAATTAT 90834 29 100.0 32 ............................. TGACGGTCCGAAAAAAGTTGGCTGAAGAAATT 90773 29 100.0 32 ............................. GTTATTGCGTTTTCCTCACCTGCGGCGAGTCC 90712 29 100.0 32 ............................. CATTCCGTGCAGCGGTCTGAATAATTGCCGCG 90651 29 96.6 32 ..........................T.. AGTAACGACGAAAAAATACAGGCACGGGCCAG 90590 29 100.0 32 ............................. ATCCCCGCAGGTATCGCGCAGCTATCGATCGA 90529 29 100.0 32 ............................. GGGTATAAAATAATATCGAACGCAGCAGCAAC 90468 29 100.0 32 ............................. GGCAGCGCGAAACGCACGCCGACACGCTGGCA 90407 29 96.6 32 ............C................ CAGCGTTATGCGACGGGTGAAGACGCCGACGA 90346 29 96.6 32 ............C................ GGTAAAAACACGGTCTGAGCCGACATTCATGT 90285 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTAGATTGTTGATGCTGAATACATTTTTTTACAAACAGTTATGTATGCTTAG # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //