Array 1 97038-94627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBF010000015.1 Salmonella enterica isolate 3541_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97037 29 100.0 32 ............................. TTTCCCGGCAATCTGTTTCAGTGCTACTGGGG 96976 29 100.0 32 ............................. ACGACCAGCCAGGCAACGCGGGTAACGACAAT 96915 29 100.0 33 ............................. CGTGGTTGTTGTGTTGCATCCACGCCCACCAGC 96853 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 96792 29 100.0 32 ............................. ACCGAGCGATCTTCTCGCTATTTCAATAAGCC 96731 29 100.0 33 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGGG 96669 29 100.0 32 ............................. AATGAAACGCCTGGTGGCGCTGATCCCATTCA 96608 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 96547 29 100.0 32 ............................. TGATTGGCGCAACCGCAAAGCTCAAGGCGTAC 96486 29 100.0 32 ............................. GACCCAACGCAAATTTTGCCGGTCTTCGAGGA 96425 29 100.0 32 ............................. ATAATTTACCGGTTTTTTCATCCTCCAGTTTC 96364 29 100.0 32 ............................. GCAATGTCCTTTGCGAGTTTATATTCACTGTC 96303 29 100.0 32 ............................. ATCCAGAGTGGCGCGAGGCTATGGACGCTATT 96242 29 100.0 32 ............................. ACGTCGAGTTTAATACTGTGGATGAGTTTAGC 96181 29 100.0 32 ............................. GCAAGTCACAGCGCGACAGAGGTCTATTCCTG 96120 29 100.0 32 ............................. CTGATTCATCGTGGCGCCGCGCTGTGAACACG 96059 29 96.6 32 ............T................ TTGATATTTAAACATTTCAAAATCCCTCTTAG 95998 29 100.0 32 ............................. GGTGCAGGGGCGGCGTATTTGCGCCTGCGTGT 95937 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 95876 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 95815 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 95754 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 95693 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 95632 29 100.0 32 ............................. GCGGAGATCCGGGGGAGCTATTTCAGGTCATA 95571 29 100.0 32 ............................. ACAACAAAAACGCCGGGCATAACCAGGCGAAA 95510 29 100.0 32 ............................. GGATTTCGTCTTCTTCGGGGGGGTAATCGATA 95449 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 95388 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 95327 29 100.0 32 ............................. TTGGAGACTGTGGGTGTGATCTCCATCGGGAA 95266 29 100.0 32 ............................. GACGTTTGATGGCTGGAAGGTTCTGTTTGAGA 95205 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 95144 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 95083 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 95022 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 94961 29 100.0 32 ............................. CCTGGAATTGTTCGCTTTCAGTGTCGCTATTT 94900 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 94839 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 94778 29 100.0 32 ............................. GCAATCAAATAACGGACGTATCCGCTCAGGTA 94717 29 100.0 32 ............................. AGGGCCGTTCCGCAGTCGGCAAGGGCTGAAAA 94656 29 93.1 0 A...........T................ | A [94629] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGTCATCGGGGGCATGGTTGATGAGTATGGTAGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115459-113296 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBF010000015.1 Salmonella enterica isolate 3541_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115458 29 100.0 32 ............................. CCGGAACGCTGATGGCGTTTGACATGAGCGCC 115397 29 100.0 32 ............................. CGTCAAAAATTGATCGCATTATTGGTCTGGCG 115336 29 100.0 32 ............................. TCTTCTTTTTTGTCTTTATTGCTCATGATTGA 115275 29 100.0 32 ............................. GCTATTTCATGACAAAAGACGAATTTATCCGG 115214 29 100.0 32 ............................. ATCAGGACGCTTTCCCGCTGTTTTAAAAACGC 115153 29 100.0 32 ............................. CCATTTTGTTTTCCCAGCCCTCTTCATCCGGT 115092 29 100.0 32 ............................. GTTTGATCAGGATTTTTTGCGGCTGCATCCCT 115031 29 100.0 32 ............................. CCGTCACGGGGAAATTGTGGTGCCATCGGTTT 114970 29 100.0 32 ............................. ACCGTATAGCTATTGCTGAGGGCGGTAGGATT 114909 29 100.0 32 ............................. CTTATATTCTAAGTAAAATGGTTATCTCACTG 114848 29 100.0 32 ............................. ACTCAGGCTGGCGCGGCGCACGTCTGCCGGAA 114787 29 100.0 32 ............................. TCGGTGGGACTCTGGAGCGCTCCCAGCGTGAG 114726 29 100.0 32 ............................. ATTCACAATCACCCCCGTTAGACTGCTCCCAT 114665 29 100.0 32 ............................. CGTCCACCCAGCATTTTCTGGAACCTGGTCAT 114604 29 100.0 32 ............................. TCTTGCCATCGCCGGCAAACCCCATAATCCCC 114543 29 100.0 32 ............................. CGTGATGAGTTGCCAGTGCAGTAGTCATGTAT 114482 29 100.0 32 ............................. GCAAAAATGGCGGTGGGCGCCCGGCTCACAGA 114421 29 100.0 32 ............................. TGCACTTTCTTTTCAATCTGAATTTTGCCGCT 114360 29 100.0 32 ............................. GTCCTGAGCACTAAGCGCCAATGGCATGGCAC 114299 29 100.0 32 ............................. TCGGGTTGTGATCTGTCGAGAATCCGAGCATC 114238 29 100.0 32 ............................. GATGATATTGGTAATAACCCGGTAGTCATTCG 114177 29 100.0 32 ............................. CCGCTACCGTCGCCGTCGCCGCAGCCGTCGCC 114116 29 100.0 32 ............................. ACGTTGCTCACCACCTGACGCTTTGTGCAGAT 114055 29 100.0 32 ............................. CTGCCATTGCTGGCGCTCTTTAGCCATCTTAT 113994 29 100.0 32 ............................. CGTTCCGTCTGGCCAGCCAGCAAACAGGTATC 113933 29 96.6 32 ................T............ CGCCCGATTAACTCTCGGTTTTTTACCGACGC 113872 29 100.0 32 ............................. GATTTTCAGGAGGAAGTAACCATGGCTAAGAA 113811 29 100.0 32 ............................. GCAAAACTAACGAAGAAAGAACAGGCCTGGAT 113750 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 113689 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 113628 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 113567 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 113506 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 113445 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 113384 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 113323 28 86.2 0 ...........AT...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGGAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //