Array 1 1747070-1745586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHIU010000001.1 Methylomonas fluvii isolate ElbeB, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1747069 36 72.2 36 ....TC.C......GT.......GA.AT......A. GGCGCGGCTGATGCGGTTGATCGCCGCGTCGTAATG 1746997 36 94.4 37 A......................G............ GTAATATCCATGATTTGTAACGGTAAGTAATCGGCCA 1746924 36 100.0 37 .................................... AATTCAACGAGCTGAATCACGGTCGAGAGTTCAAAGT 1746851 36 100.0 37 .................................... AGCCGCGTGGTGACTGTGTTATGACCGAAATCCTTGA 1746778 36 100.0 35 .................................... CGTTGCCAGCTTAGCCCCGTCAAGGTTGAGGCTTA 1746707 36 100.0 37 .................................... GCCTGGCGCCGATAGCAGTTAAGTATTTCAGTACCGA 1746634 36 100.0 37 .................................... TCCTTGCGTAGCTCGACCAGTTCAGCCGGGAAACCGT 1746561 36 100.0 35 .................................... GGCAAATTGGCTGGGTCCGGAGCCATCCACGAACG 1746490 36 100.0 37 .................................... CCGCCGATTACATCCAGGCGAAGAAGAAAAAATACTT 1746417 36 100.0 37 .................................... GGCATTTTTAAATACCGAAGGCACTACGATATGAGTG 1746344 36 100.0 36 .................................... AGCGATGGCTGGAAATTGGCTGGTTTTCCGGCATAA 1746272 36 100.0 37 .................................... GTTCGACATGGCCGGCTACGTGCAATCACTCAAGGTA 1746199 36 100.0 37 .................................... GGTCGTTTGGGATTTTATAACCACGGGATTGATGATC 1746126 36 100.0 35 .................................... CGCAATTTAAGCACGGCTCAACACTTCTCAAAATC 1746055 36 100.0 37 .................................... ATCTGTGAATGTTCACATCTGTGAATGTTCACAAATA 1745982 36 100.0 37 .................................... ACCCGAAGACTCACCATAATTTGACTTACGCATAACT 1745909 36 100.0 36 .................................... CGGCCTCAAGATGTACATGCTGACTCTGACTGTGAA 1745837 36 100.0 36 .................................... CCGACGGCCTCTTGCTTGCGAGGCGGCGGGAGCCAG 1745765 36 100.0 36 .................................... CGAATATGTGGCGTCCTGTGAGCACGTCTCGCAGTC 1745693 36 100.0 36 .................................... ATAAGCTTGGCGGCAGAGGTTCAAGGGGGTTTCGAT 1745621 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 21 36 98.4 36 GCTTCAATGAGGCCCCGGCGGGAAGCCGGGGAATGC # Left flank : CGCGAAATAACCCAAGGCAACCGGCAGCAAAAAGTAAGACAGAAATATCAGGCCATCGCTGATCACGAAGGTCCACAACAAACCCGGCGACCAGCTCAGGCAATAGCCATGCGGCATAAAATTATTGTCGGTCAGAAACCTTAGAATTTCATTCATAGCAGGAAGGTCGGTAATAGTGATTGCGCGATTTAGGGAACTCGAACGACATACCGTCGCCGCGTAATCCGTTTGCTAACGAATAACCCGCATTTGGGTTCTCTAAATTCGATACAGCTAAACATAGCAGCTAGCCAAAACTGCGTAAGGTTTAGCCATTTTTTATGTGGAATTAAATACCGACAGCAGGCCGATGGTTGGCGGATACGCCTCGATTATTAACCCGACCCTATTTATCACGGGTATGCCGTTCGGTAGACTCAAGGCCAAGGGTATTTAAGGGCCGGGTAAATAAAACCGCCTGGGTTGTGAAGCCCTACCTGGACGATAACGCCAACGCAGTC # Right flank : AGCGCGGGCTGGAGGCCTTGATTGGCGCGGCCTGCGCGGGCCGTTTGCGAGAGCTGTAGGGCAACGCGTACCAAGCGTACCCAAAAAACGCCCTACCAAACAAACGTTTTTTATAACATCCTGATTTTTAAAGAGCTTACTCGGAGCGAGCACTGCCCGGGTTTTACGCGCCACTACAGCGCTCGCAAAGCGGCGGCGGAAAATCCGCATCAGACGATCACCGGCTGCCGTTCCACCACGTCGAAATCCTTGCCCAAACTGACCACCGACGGTTTCACCGTTTCCGCCGGCCCAACATTAATGATCAGAATATGGTCGTCGCTATGGTGAATAATGCCATCCAGCAGCGCGATTAATTCCGCATGGCGCTTGCGGCTGAGCCGGCATTGGAACACCGACAGTTGCAACCAATCGCCGTAACCTTTCATCAGCCGAAACACCCGCCGCCAGCGTTTGGTATCGCTGATGTCGTAAGTGACAATATACAGGTGTTCTAGGGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAAGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.20,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 37219-39934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHIU010000003.1 Methylomonas fluvii isolate ElbeB, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37219 29 100.0 32 ............................. TAATAAACCTCAGCCGCGCCGATGCTATTGAG 37280 29 100.0 32 ............................. CCTACATGGACAACGGTGACACCTACCCGAAC 37341 29 100.0 32 ............................. CGATAGTTTGAGGTGCAATCAAAGGCGGGTGA 37402 29 100.0 32 ............................. CTTGCAAAGATCGGGCGCCTCTTGAATCGTTG 37463 29 100.0 32 ............................. TCACACTGAGGCTTACCCATACGGCGTTTCAA 37524 29 100.0 32 ............................. TAATAAACCTCAGCCGCGCCGATGCTATTGAG 37585 29 100.0 32 ............................. GTAAACAGCCGCAGCACAGAGGCAAAGAACGC 37646 29 100.0 33 ............................. TGATGGAGTTACGCGGCAAAGGCGCACGGCAAG 37708 29 100.0 33 ............................. CGCATTACCCACCGCCACTAAACCGCTTAAAAC 37770 29 100.0 32 ............................. CCTTTGTAATGGTTGCCGCCGATTTGGGTGTT 37831 29 100.0 32 ............................. ACATGCGCCGCCCGCCCGTTACGCCCCGGCCA 37892 29 100.0 32 ............................. GCCACTACGCCGAGGTCGATCAGTTTGGAGCG 37953 29 100.0 32 ............................. TCGATAAACAGGTTGCGCAGCTCATTTTCAAC 38014 29 100.0 32 ............................. CCGTCGGTCCGCAGTATGTTTATTGGGTAATG 38075 29 100.0 32 ............................. TCTTCCGTGTGCCTATCAATCCCACCAATGGC 38136 29 100.0 32 ............................. CGGATGACGACGAATACGGCGAAGATGAAGAG 38197 29 100.0 32 ............................. CAAGAGGCGGACACATGATCGTATCTGAACGC 38258 29 100.0 32 ............................. TCATCATCGGTTATGCACTGATGCCCGCTATC 38319 29 100.0 32 ............................. GCATTTCATTTAACTTAATTTGACATTACAAA 38380 29 100.0 32 ............................. TTGGCGGTCGCAGTTAGCGTGTCGCTTTCCTG 38441 29 100.0 32 ............................. CACTCTTACCACTGCCCGGGGTACCGGTTACA 38502 29 100.0 32 ............................. AGTCAGTGACCACACCGGAAATGATCGAGAAA 38563 29 100.0 32 ............................. CCACCGGAACCAGTTGCAGGCGCACCACCACC 38624 29 100.0 32 ............................. CCAGTTGTTAGCGTGAACGTTTCCGCCGTTTC 38685 29 100.0 32 ............................. TCATGGCGCGGATTCCAGTTGTTCCAGGTCTT 38746 29 100.0 32 ............................. CGTTATAAGGAGGGTAAACAGTCGCAGTAGTA 38807 29 100.0 32 ............................. AATCAGTCACTACTCCGGAAATGATCGAGAAA 38868 29 100.0 32 ............................. CCGATAATCAAAGGTAACGCCAGGCATCACCA 38929 29 100.0 32 ............................. CCTTGGATTAACCTCCAGCAACTTAAGCATTT 38990 29 100.0 32 ............................. CTGATTACAGTTGTCGTGATAGCGTTGTGCCA 39051 29 100.0 32 ............................. GCTATCAGTTTGCGGATAGCCTTGGTCATCCG 39112 29 100.0 32 ............................. CTATTTTTGTGACTGGTCCACGGTATCAATTC 39173 29 100.0 33 ............................. GACACATGGAAAAAGGGCGCAGACGTTGCAGAG 39235 29 100.0 32 ............................. CCGGCCGAAATAATGGCCCACTTTGATTCATT 39296 29 100.0 32 ............................. CAACCCGGTGCCGGCTGAAATTTCCAGCGTTG 39357 29 100.0 32 ............................. CCAGCACCGGAAAACCTCATGGCCGGCCGGAT 39418 29 100.0 32 ............................. TTGTCCACCTACGGCGGGAAGCTGGCGGAGAA 39479 29 100.0 32 ............................. AATGATCACTCATGCCGCGCACCCTCTATTGC 39540 29 100.0 32 ............................. CCATGAACAAACAGCTTTCAGCTTCGGAAATG 39601 29 100.0 32 ............................. CGGCTAATCCGGCCCAGGTACCTGACAAAGTG 39662 29 100.0 32 ............................. AACACCCTGCTGTACTCGTCAACCTGAATATC 39723 29 100.0 32 ............................. TTGACGGAAACGAAAACCTAACTGCGCCATTA 39784 29 100.0 32 ............................. ATGGCTAAGCCCCAAGGTGCTCCACCACCGCT 39845 29 96.6 32 ...........T................. CTTCCGCAAGATGGCTCAATGGAAGTAGTTAT 39906 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.9 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : TGCCCCGGCCATTCCCAATGCGGAGGGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTTCCGCCCAGACTGCGTGGGCGCTTGGCCGTATGGCTAATCGAAATTCGCGCTGGCGTCTATGTCGGCGACTTGTCGGCCAAGGTGCGCGAAATGATCTGGTCGCAAGTCGAGGATGGCTTGGAAGACGGCAACGCTGTAATGGCTTGGTCCACCAATACCGAATCGGGTTTCGATTTTATGACGCTGGGTAAAAACCGCCGCCTGCCCGTAGAACTGGACGGCTTGAAATTGGTGTCGTTTTTTCCGCCGGACGAAGCCGATTTGTCTCCCTCGCCCTCAGGGAGAGGGGCGGGTGAGGGAAAATAGGTACTAAATTTCTGTTGGGGTACAGGGCGCAAAGTGGTTTCGTCAGCTTTTTAACAACTTGGAAAAGGTAAAAAATTCGGTAGAAGTTTAGCCGAGTTATTTTTATATGCGTAACAATAAGTTACGATTAGT # Right flank : GAAATTGATCTCGGAATTAATCGCAAAATCTTGTATAAAGTACGACAGCTATTATGGTTCTGACATGGTCGAAAGACGTCACCAATATTATTGCGGCCCCATGCCCCAGCCTTCCAGTTCCGACTGCCTTTTGACCGTGGGCACATTCAGATCGGTCATCCGGCCTTGGGTGCGGGTTAAGGTATCCTGCCGACCACTGGAGGCAGCACCGTATTTCTGCGGATTCAACCGGCTGCCGCTGCCGGTCAATTGATCGAGATTCAACATGGATGCAGCATTGGCGTCTGTCGGCAAATGCCCGGTCTGTGCCAGAATGCCTAACCATTCGTCCAGATTGACTTGAGTCCAATCGACGCGATACAGATCCGATACTTTGATACCGCTACAACTGGGATTTTCCGGCGTACCAAAATCCATCCCCAGTTGTGGTTTGATTTGTTCGTTGAGGATGCGTGCTAGCGGCGAGTTGTAGCAGCAATAGCTTTCCTCGCGCTCCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //