Array 1 10826-11462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCE01000032.1 Streptomyces violaceoruber strain NRRL S-12 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10826 29 100.0 32 ............................. TGGATCGGGACATGCAGGATGAAGCTGAAGCT 10887 29 100.0 32 ............................. TCCTGCGACATCCCCTGCGACATCTCCTGCGC 10948 29 100.0 32 ............................. GCGCGTGACCTGACGTGGCCCCGGCCCGGCCG 11009 29 100.0 32 ............................. GGCGCGAGGGTCGGGGCCATGACGTCGAGCAC 11070 29 100.0 32 ............................. GGCGACATGGGCGAGGCGGTCGGCCGCTGCCT 11131 29 96.6 32 ...G......................... GCCGGCCGAGCCGGTAGCGGACCGCGGCCCGT 11192 29 100.0 32 ............................. CTCGCCAACGAGCGGGTCCACGCGATGATCGA 11253 29 100.0 32 ............................. ACGGTCTACCACTTCGACCGGGTGCCTGAGAC 11314 29 96.6 32 .........................C... GGGATCAAGGCCATGGGTGGCTGGCTCAAGTC 11375 27 89.7 32 ............--...........C... CCGCCGGTCGACAGGGAGCACGAGACCGTGGT 11434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGGCTCGGTGGTGGGGGCCTTGGCCTGTCGGCGAGTGTCGCGGTCTGCCCGGCGTGTCGCACACGACGCGCGCGTGCCGGTCGGCAGGGGGGCGCGGTGGCTGATGGTTCGTGGGTTGCTGGAGGTGTGGGGGAGGGGGCAGAGGCGGGACTGGGGATCCGAGGTGGGGAGCGTCGCAGGTATGCCTGACCTCCGAGCGAAGTTCGCTGCCGAGTACGGCGTCGCTGGCGCCCGGGTGGTGCGGCCCGGGCTCGGAGCCAGGCTCGTCACGGGGGTGCCGGCTCCAGGACTTCGGTGCGTTGGCCCTGCCTGGCTTACCGGGTGGTCGGCCGAAGTACGGGAGTCGTTCGGCCGGCGCTGCTTCTCTCGTGCGAGCAGATCGAGGTGGCGGTTGGCCTCCACACGTGGAAGCCGCAGGTTGGCGTGTGTACTGTTTGCCGGAATCTGTGAAAGTCGCCGAAACCGTGTCTCAGCGGCTGTAAAGATGCAGGTCAAAGAGT # Right flank : CTGCGCCGGGCAGGGCCTGCGGCCGCGGCCCGTTTGCTATGGGCGAAGTTCGGCCGAGCCGGAGCACCGCAAGGAAGCGCCCCCAATCGAGGGGCTTCCACCGACGGCACGTGCCTGAGCCTCTCCTGGAAGCAAGATCAAAATTAGAGTGAGGACAAAGGGGGTTCCCCTCGGGAAACCCTGGCAAGCCGGGAAGACACAAACGCACAAGGGCGAGGAGCGGGGAGGGGCGGATGTGGCCTGGCTGACGAGGATCGTCGCTGACGAGCAGGTCGAGTACCGGCTCAAGCAGCAGGCCGGGTGCGCAGTCGTGGAGGCCGGGGAGGGCGAGACGGCCGTCCTGGACGCCGTCGAGAGCCGGGCCGTCGACTACCGACTGCGGCCGGAGGGCGGGGCGGCTCTGGTCTGGATGGGCAGCGGTCTGGAAGCTCTGGGACTGGTCGAGGGCGCCGCCTTGGACGAGGAGGGCAAGGCGGCTGCCCGGCGCATCATGGCGGGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19484-15975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCE01000032.1 Streptomyces violaceoruber strain NRRL S-12 contig32.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19483 29 100.0 32 ............................. GACGCCGTTGCGGCACCAGGTGCGGATGGTGG 19422 29 100.0 32 ............................. GGCCGGCTGCGCCTGGAGGCGACGGGCGCTTT 19361 29 100.0 32 ............................. CCTTGGTGGGAGGGGCACGGAGCCCTGCCGGC 19300 29 100.0 32 ............................. CAGATGAAGGTCTGCGGAGAGAAGACTCGCGA 19239 29 100.0 33 ............................. CGGTCGTTGAGGCTGTCGAAACCGGCGGTGTTG 19177 29 100.0 32 ............................. CTGTTCCACCCCTCAACCATTCAGAGTTGAAA 19116 29 100.0 32 ............................. TCGCAGACGGTCAGGCCGGCGTGCGTGCTGTC 19055 29 100.0 32 ............................. TCCGCTTCAGCCCTTCTCTGGCGTGACCGGCC 18994 29 100.0 32 ............................. AGTTTGGGGCGTTTGCCCGGTGTGCGGGCAAT 18933 29 100.0 32 ............................. AGCTCGCGGTGGTCGCGGACGAGCGGGGGCCG 18872 29 100.0 32 ............................. GGCAACGGACGACACCGCACCTTCAGCCTGGC 18811 29 100.0 32 ............................. GAGAAGCACGACGCGTACTCGTACCTGCGCGG 18750 29 100.0 32 ............................. AGGTCGACGTCGGTCTCCGGAACCTCCAGGAG 18689 29 100.0 32 ............................. AACACTTGAGTACAACCTCATAGGAGAGTCCT 18628 29 100.0 32 ............................. TACCGCAAAGATCAGATAGCCAACGCCAAGAT 18567 29 100.0 32 ............................. GACGCCGGCCCGCTGCTGCCGCAGCTCCACGC 18506 29 100.0 32 ............................. AGGGTGTTGCCGGAGTCGAGGAGCAGGTGGAG 18445 29 100.0 32 ............................. GCGGAGCACATGGGCTACGACATGGCGCTGCA 18384 29 100.0 32 ............................. ACCGGCTTGAAGTTCAGCCAGCCCCAGGTGTC 18323 29 100.0 32 ............................. CCTTCTGAACCTTGACTACGGGCACGCGGATT 18262 29 100.0 33 ............................. CGCCCACCGATGCCGCCCCCGTCGAGTGCGCGG 18200 29 100.0 32 ............................. GGCGGCGTGTCACCGGGCTTCCGGACAGGCGG 18139 29 100.0 32 ............................. GTCGGAGCGATCCGAAATCGGGGACAAAGCGC 18078 29 100.0 32 ............................. TCATCCATGTTCAGGGTCACGGACTTGATCGC 18017 29 100.0 33 ............................. CTCCACGTGCACCCTGCCGTCCGGCCGCAGCGA 17955 29 100.0 32 ............................. TGTCAGCCGAGGAGCGGCGCCTGGTCGAGCGG 17894 29 100.0 32 ............................. GACTCCTGACAGAACCCGCAGGCCCTCATGCG 17833 29 100.0 32 ............................. TGGGAGCACCGAGCCCGGACCGCGATCTCGAT 17772 29 100.0 32 ............................. GACCAGGTCTTCGATGCCGCGCGGGTGAGAAA 17711 29 100.0 32 ............................. TCGCGGTAGTTCGCCGTGTCCAGGATGAACAC 17650 29 100.0 32 ............................. CGCGTCTGGCCGGTGACGAGCTCGCGGTCCAG 17589 29 100.0 32 ............................. GATCTCGTCGTGCGGCTCGATCCCGAGCTGCT 17528 29 100.0 32 ............................. GAGTAGCTGTAGGACCCTCTGAGCCCCCGCCG 17467 29 96.6 32 .............T............... GCTCTGGATTGGCGCCGTGCGTGCGAGCTGTC 17406 29 100.0 32 ............................. TGCGTCAGGTCCAGATGAACCAGGGCGTCCTT 17345 29 100.0 32 ............................. GGCGGCCCCCGCCGGGGCAGGAGCCACACGTC 17284 29 100.0 32 ............................. GTCATCGTCTGGCACACGACCGAGGGCACCAG 17223 29 100.0 32 ............................. TTGGTCCAGCAGTAGCCCATCTCGTGGCCAGG 17162 29 100.0 32 ............................. ACGTTCGTCATGGCGTCCGTGGCCGCGCCGAC 17101 29 100.0 32 ............................. GTGCACCTGAGGCTGGGCGCGTTCGAGCGGAC 17040 29 100.0 32 ............................. GCCAACCTGGTCGGCTGGCTGCCGCCCGGGCT 16979 29 96.6 32 ............G................ TGATCGATCGTCATCCGTCGCATGCCGCCGCG 16918 29 100.0 32 ............................. CCCGGCGACGTGCATCATCTCGCGCGCCACGC 16857 29 100.0 32 ............................. ACGCTCCCCTCGTTCTCCCCCGTCGTGTCCGG 16796 29 96.6 32 .........A................... GCTCCTCCTGCTCCCGCCGTGAACGCTCGAGC 16735 29 100.0 32 ............................. GCCTGGACGGCCAGGCTCTCGGGGGCTTCGGT 16674 29 100.0 32 ............................. GAGGAGATCGACGGGATCATGTCCGGCCTGGT 16613 29 96.6 32 .......G..................... GACCTGGAATTCGAGCAGCTCCCGTGCCCCCA 16552 29 96.6 32 ..................C.......... GCTGGCCTCGACTTCGTGTACGGCATCTGGGA 16491 29 100.0 32 ............................. GCGTGGTAGGCCATCGTCAGGACCAGGGGCCG 16430 29 100.0 32 ............................. ATGCTGCCCAACCGGCTGCACCGATCCAGCCC 16369 29 100.0 32 ............................. TCCCTCGTCGACGGCACGTACGACGGCAGCTT 16308 29 100.0 32 ............................. CGGTCGGTCACGGCCAGGTCCTCACGGACGTT 16247 29 96.6 32 .................A........... CGGTCGGTCACGGCCAGGTCCTCACGGACGTT 16186 29 96.6 32 .................A........... ACGAAGCAGCAGGTGTGGACGTCGGAGGATTC 16125 29 93.1 32 .....T.T..................... GCCTGAGGTGTGACCGCTCCGGTCACGACGAA 16064 29 96.6 32 ............................G AAGTCGGTCACACGCCGGTAGTCCAGGCGCCG 16003 29 89.7 0 ........T...............AC... | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCACCAACTACGACGGCCCCGAGGACTACGGGGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTACGCGGCTTCCTCACACGCTGGCTGCTGGAGATCTCCGCCGGAGTATTCGTCGGCAACCCCTCCGCCCGCATCCGCGACGCCCTCTGGGAAGAAGTCCAGCAGTACGCGGGCCAGGGCCGCGCCTTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCACCGCCCCGACCCCAACGCCCCCACCGCCGGACCAGCTCCCCGGAACGGACCCCCGTCCGGCTGGAGCAGAGCCGCCAAACGCCGACGCTTTGGCAGAGGCTGATGCACTTCGAACACCTTATGCCCCATTTGCCAGATTCAATGAAGATGCTCGAAAACCGCCTCCGCCGTCAGTAAAAGCGCAGGTCATCCAGA # Right flank : TGTGTAGGGCCGTACTCCTTCCGCGTGCTCTCCCGCTCCCCGCGTCCGTTGGGGCCCCCGGGGCCCGATCCACGGGTCTCCGGCCAATACCACCAGCGACCACCGGCACCGACGCGGGACCCAGACAGCGCCATGGAGCTACTGCCTGCTCTGCCCCCGGGACTGCGTCGGCTGTGGGTGTGCGACAGCAGCCTGCTGGTGCTGCACGATCCGCTTCGCCTGTTCCTGCTGGACGGTGCGGCGTCCCGTCGTCTCCCGGGCGTGCAGGTCGGGGAACTTTTCGGCGATCGCAGCGCGCAGGGCCTTCTCGGCTCGGGCGTTGGCGGCCTGGGCGCGGTGGCTGGCAGCAAGCTTCCGGAATTCCCCGGCCTGGCGGGTCGCGCGGCTGACGTCGTTGCGGTCGCGTTTGTCCATGCCGTGCCCGTGCCGGGAGGCGGTGGAGCGCATCTCCAGGAACCGCTCGGCGGCCTTGTCCGCGTGGTCGGGCACCGGCTGGCCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29153-31865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCE01000032.1 Streptomyces violaceoruber strain NRRL S-12 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 29153 29 100.0 32 ............................. CGCTTCAGGGACGACGTGACCTTGTCCAGGTC 29214 29 100.0 32 ............................. TCCGGGTCGACACCACCGATCTCGGCGAACCT 29275 29 100.0 30 ............................. CCACTCGTACCGGTCCAGGCGCGTTGCGAT 29334 29 100.0 32 ............................. GCCAGCGGCCCGGCGCGCTGATGACACGCCGG 29395 29 100.0 32 ............................. GTGACGAACGGGGGCACGAGCGGGGTCACCGG 29456 29 100.0 32 ............................. CCCATGATCTGAATGGCGCGGTTGATGAGATC 29517 29 100.0 32 ............................. ACGTCCGGGACAGCATCAGCCCCGACCGGGCA 29578 29 100.0 32 ............................. TCCACCCGGCTTCACATGCGGCGAACCGCTTC 29639 29 100.0 32 ............................. CTCGTGTCCTGGATGGGCGAGCGGATGGGGCC 29700 29 100.0 32 ............................. GGCATGTCGGCCGGGTCGGTGGTCCACGACTC 29761 29 100.0 32 ............................. CGTGCACGGCGAAATGGTCGGGATGAACTTCA 29822 29 100.0 32 ............................. GCGACGGGGTTGGACGGCTTCCAGCGCATGCC 29883 29 100.0 32 ............................. ACCTTGGCGGTGATGTGGATGTCCGGCACGTA 29944 29 100.0 32 ............................. GGTCCCGAAGCCCGAGAAGCCTTGGACGCGGT 30005 29 100.0 32 ............................. GGGCTCCCAGGCACCACGGCGACCGCCAGCAT 30066 29 100.0 32 ............................. ACGGCCCGAGCGTGGGCCAAGGCGGAGGCCGA 30127 29 100.0 32 ............................. AGGGCCTCGTCCTGGAGCGGGTCGAGGACGTT 30188 29 100.0 32 ............................. GTGGCCTGGCTGAAGGATCCCGGGAATCCGCA 30249 29 100.0 32 ............................. TCGGGCCAGTCCATGGCCGACCGCATCCGGGA 30310 29 100.0 32 ............................. CAACCTGTGCACGTCAAGGCCAACCCTCAGTG 30371 29 100.0 32 ............................. GGCGGGACCTCCCTCGGTCGGTGGCGGTCGGT 30432 29 100.0 32 ............................. GGGCCCGGGAGGGGACCGGGCCCGAACGCGAT 30493 29 100.0 33 ............................. GGATCGCCGCCCGGGATCACGCCCGGACGCGTG 30555 29 100.0 32 ............................. AGGTGCTCGGCGCCGATCCGGAGGCCGCGTAG 30616 29 100.0 32 ............................. GGGGATCACCGGCGACGCTGTGACCGGCAGCC 30677 29 100.0 32 ............................. ACGGGAGAGCTGGCCGACCTCCTGGGCATCAC 30738 29 100.0 32 ............................. GCGGCCGGAAAGATGATCAAACTCGGGATGGC 30799 29 100.0 32 ............................. GACCGCATGCAGGCCACCGCATCCAGCGACGA 30860 29 100.0 32 ............................. GTCCGCATCATTTCGGCGGCGCCGCCGGGACC 30921 29 100.0 32 ............................. AGCGGGCCGTCCTCGACGTGGGAAACCGCCCG 30982 29 100.0 32 ............................. AGCATCAGGATCGCGGTGTCCCGGCGGTCCGC 31043 29 100.0 34 ............................. ACCACGACGGCCACCCCACACACACAGCTCGAGC 31106 29 100.0 32 ............................. TCGGGATCGACACCACCGATCTCGGCGAACCG 31167 29 100.0 32 ............................. AGTTGTTCACCGGGCAGGATCGGCATCTCGAA 31228 29 100.0 32 ............................. CGGCGTCGACCCAGGTAGGGACGCTCCCGGCT 31289 29 100.0 32 ............................. GAGGGCGAGAGAGAGGCTGTGCGCACCGCTCA 31350 29 100.0 32 ............................. TGATCGCCCTCGGGGTTGTTCTGCGCGTAGTT 31411 29 100.0 32 ............................. CCGCGAAGATCTGCCCCGTGATGGCGCCCTCC 31472 29 100.0 32 ............................. ACGGCCGGAACGGTCGTCGGCGCCGCCTGCGG 31533 29 100.0 32 ............................. GCCTTCTCCGCCAGGCTGAAACCGACCATCGC 31594 29 96.6 32 .......................A..... GGGTCGGGTACGCGGCCGCGCTCTCACCCTGG 31655 29 100.0 32 ............................. GAGACGGACGACGTGAAGGAGGCCCGCAAGGA 31716 29 100.0 32 ............................. AACACGGGCGCCCTGGTCATCGACGGGAGTCA 31777 29 100.0 32 ............................. AGACCGGAGATGGAGTCGATGACCTTCGGGGT 31838 28 89.7 0 .........A.-............A.... | ========== ====== ====== ====== ============================= ================================== ================== 45 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGACACGCGAACGCCGGCGTGGCCTTGCCGATGTCGTGCACACCAGCGAGCCACACGGCAAGAGCACGCGCGTCCGACTCCCCTTGGGGCAACGCCCCGGCGATCAGCCGCCGCACCCCTACAGGCAACCACCGGTCCCACAACAGGCCTGCCACTGCGGCACTGTCTTCCATGTGCCGCCACAGCGGCAGCCACCCATCTGTCTCACGGTCATGCTTGGCCCAAACCGACCTGGCCGGCTCCCCAAGCCGACGCAGCAGGCAGGAACGGGCGTTCCCCCCATCACTCATGAGTGATTCATACAGGGAAAACCCGGCTCGCCCCACCAGAACCATAAAAGAGGCGAATTCGCTGAGAGACGGCACTTCTCAGGCATACGATGATCGGCTATCTATGGACGCGTCTACGGAACCACCCATCACCTCATGCCCTATTTGCCGGAATCTGTAAAGGTTGCTGAAACCACGCCTCTGCGGCCATAAACTTGCAGGTCAATCAGT # Right flank : CCGAGCCCCCGCCGGAATCTAGTGCTCTGACCAGGAAGGTTCGCCGGGTTGGCGATTGGGGCGGTTGGATCGGCGGTGTCGTCCGTTCCAACCGCTGGAGGTGTGGTGGCTGAGCCGGTGCGGGTGCGCAGGCTGACCGACCAGGAGGGGCAGAAGCTGCAGCAGATCGTGCGCCGGGGCAGTACCAGCTCGGTGCGCTACCGGCGGGCGATGATGCTGCTCGCGTCCGCCGGCGGAAACCGAGTCCCGGTGATTGCCCAGCTGGTCCAGGCGGACGAGGACACGGTGCGGGACGTGATCCACCGGTTCAACGAGATCGGCCTGGCCTGTCTGGACCTTCGGATGGGCGGGAGGCCGTCCCCGCCTGCTCAGTCGTGACGACGAGAACTTCGTCGTCGAGACGGCCACCACCCGCCCCACCAAGCTCGGCCAGCCCTTCACCCGCTGGTCGATCCGTAAACTCGCCGCCTACCTGCGCCGCGTGCACGGACGCATCATCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 33586-33982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCE01000032.1 Streptomyces violaceoruber strain NRRL S-12 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33586 29 100.0 32 ............................. GTCCGGCCCACAAAGTGGCAGGATCATCCCCA 33647 29 96.6 32 ..........................T.. ACCACCATCGAGTGGGCCGACCCCTGCGCCGC C [33659] 33709 29 96.6 32 ..............T.............. GGGCCGGACGCGACGAGGAAGTCGAGCGTGCA 33770 29 96.6 32 .....................T....... GAGGGTCGAGTACCCGCCGAGGACGGCGCCGC 33831 29 100.0 32 ............................. TTCTACGGCCAGTACCAGGACGGTATCTGTGG 33892 29 96.6 32 .........................C... GAGCAGGTCAAGAGCGCTTTCTCGGACCTGTC 33953 29 82.8 0 T............TG.........C..T. | A [33975] ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AGCCTGAACACCGCCTGGAGGCCGGTGACTCAGAAGCCTCGGAAAACGCCGTCGTCGTCGATGGCGCCGACGAACTCCTCAAAGTCCATGTTCGCCTCCAAGAGGTTGTTCTCGATGCTCCACAGCTCGGCTGCCACAACGCGGACACACCGCCCACGCTCACGCCGCAGGTCCACTACGAGAAGCGGCAGGTCAGTCGAGGCGACAGCTACAAGGTCTGCAAGGACAAGAAGTGGATGCTGATACTCCGCAGGGATGAGGTCGAGGGCCGATTCGGGCGTCAAGCCCTCGTATCTCCGGTCATCGACAAGTGCGACGTTGGCCAAGAAGCCGTCTCTACTAGGCGAGCACAGCGCCACCCGCAGAGTGTCCCACGCACCGTCTGCCGAGAAACCGGTGCGCACAACGAGGGCTTCCAAAGTGCACGGGAGCTGATGCATGCGGGGACAGTACCGCCAACCCGGTGAACCAATCCGGTCCCAGCACTAGACGGCGGGGGC # Right flank : CACAACGACCCCGTCCGTGTGGCATGGCCGCCCGGCGGCGGCTCTCCGCGGAGGATCACGCGCCGCCCACCCCCGCCGACGAAGTCGCAGACCCGATCGCGGACGACGGAAGAGGCACCGCAAGGTCGTACAGCCGCCCCCGAATGTGGTGGACGAGCGGGGAGTCGGCGCCATGGATGTCTGTGGCGACGGTCAACAGGGCGGCGCCCAGGCGTTGTCGGTCAGGCCCCGGCGGCACGGCTCGCCACAGGCTGTAGGCGCGGCGGGTGGCCGCCTCGACGTCGGGGTGTCCCGGGCCCTGGATGGTGACGCGCAGCTGTGCGGCGTGCAGGTACCAGGACAGGCCGGAGGGATGGTCGCCGGCGAGGGCGGCGAGGTAGCCGCGTACTTCGCGGACCTGGATCGTGTGCAGGTGCAGTTCGCCGTACTCGGCGGTGGCGTCCCGGTCGATCCGGGCGGCGAGAGCGGCGGCGTCCGGCAGGCGTCCTGCCTGGGCGATC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 50741-52232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCE01000032.1 Streptomyces violaceoruber strain NRRL S-12 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50741 29 100.0 32 ............................. CCGGTACGACCCGGAGTCGACCAGGCCGGACA 50802 29 100.0 32 ............................. GACTGGTCGGCGCGGGACCAGCTTGAGTGGTG 50863 29 100.0 32 ............................. GACTGGGAGGCGACGAGGACGCCTACCGGGCC 50924 29 100.0 32 ............................. GACGACTTCGCCACCGACCGGAAAACGTTCAT 50985 29 100.0 32 ............................. ATCCGCCGAACCGTCGGCGACACCCTCGCCTT 51046 29 100.0 32 ............................. TTTCCCACCGGAGGGCGGGCAGAGGGTGAGGC 51107 29 100.0 32 ............................. GCTGACCGGCCCGGCCGAGATCCGGGACCGGC 51168 29 100.0 32 ............................. CGGGCAAGGTGGACCCCCGCGGCTTCACCATG 51229 29 100.0 32 ............................. ACCGCGAGGAGGTCGGCGAGGATGCCGCCGAC 51290 29 100.0 32 ............................. GCGGCGGATGAGGCGGAACGCGGCCGGTTCGT 51351 29 100.0 32 ............................. CCGTCGACTACACCGGCGCCACGCTGGTCGTC 51412 29 100.0 32 ............................. TGGTCGCCCTCGGGGTTGTTCTGCGCGTAGTT 51473 29 100.0 32 ............................. GCGCCGTCCTCGAACGGTCCGGACGACATGAC 51534 29 100.0 32 ............................. GCCCGCTCGTTCGGGCTGGTGTGGGGCGACCC 51595 29 100.0 32 ............................. CCGAGCTTCGTGGCGACGTCGTAGGACGTGCG 51656 29 100.0 32 ............................. TCCTGGCCCTTCGGGAGGGCGTCGACCGCTCC 51717 29 100.0 32 ............................. CGCGAGGCCCACGAGTTCGAGCACGACCGCGA 51778 29 100.0 32 ............................. GGGGGACCGGATGGCACACAACCTTGACCAGG 51839 29 100.0 32 ............................. GACGTCGTCATCGCCCAGGTGTCCCCCACGGT 51900 29 96.6 32 ....................A........ TAGATCAGAAGGGAAGATAGGGCCCATGACTT 51961 29 100.0 32 ............................. AAGAACGGTGCTGGCGCCATCTCGGCGATCGC 52022 29 100.0 32 ............................. TACAAGGTCGTTTTCCCGGACGCGGACTCCAC 52083 29 100.0 32 ............................. TCCTGCCGTTCGTCGCGCTCCCGGCCGCGCCC 52144 29 100.0 31 ............................. AACCCAGGGGGGTTCCATGGGGTCCCCAAGA 52204 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCCGCCCGCTTCGCCGACGACGACGTGGACGCCTTGCGGGCCGTCGCCACGCTGGCAGAGCACCATGGCGGAAGACTTGCGGTGACCCTGCCGCCCAGCGTCACCCACCCCGCGTCGCGCCGGACACCGGGACCGCAGAGAGCCACTCCGTCTTCCAGATCACTTGCGCCGTCGCCGTCGCCGTCGGCAGTCCGGTCCGCGGCGACAGCGCGCCCAGCCCCCGCGTTCCGAGGCGTGCAGTGACCACGAGCGGGCCGGGGCCTATCAGGGTGAGATCGTCCGTGCGCCGCGTGGCCTGGCACACCCATCACCAGGGTCGGGCAGGACGCAAGGACGACCGCGTATCGTCAACGCCGCAGTCCCCGCTGAACGGCCATTCCTGCCACTCAGGTCCTCGTCCACGCCCTACGGATGCACCCTGCCCGATGTCCAAATTGCCGGATTCTGCAGAGTTTACTGAAAACGCACCTGCGCGCCCATAGAATCCCAGGTCAAACAGT # Right flank : CGGCGAGCTTGGGCGACTCACTGCCGGCCTCGCTGGTCCCGGCGCTCGTGAGGGGCCGAGACTCCGTGTCGGCGGCCAACGGCTTGTACGGGGCAAGCGGCCGTCGCGAAAGCTACTGATCACTCATGCCGGTCCACCCGTGGTCTCGGAGCCCACCCGACGAGACCGCTCAGGCCGCTAGTCTCCCGGCCATGACTGACTATGTGCAGGTCTCGACCGCTACGCCCGCCCGTGAGGAAGCCGTCAGCCTCGCACAGGGGGCGGTCAAGGCGCGGCTGGCCGCCGGCGCGCAGATCATCGGCCCCGTCACGTCCGTGTTCTGGCACCTTGGTGAGTTCGGCGAAGGAGAGGAGTGGAAGCTGCTGCTCACCACCACCAGCGAGCGGTACCCGGAGCTGGAGCGGCACCTGCTGGAGGCCCACCCCTGGGACAATCCGGAGCTGATCGCGACGCCGATCACCGGGGCACCCCGGTGCCTGACCTGGATCAGCGACAACGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 56116-58395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCE01000032.1 Streptomyces violaceoruber strain NRRL S-12 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================== ================== 56116 29 100.0 32 ............................. TGAAGGAGGGACGCTGATGCGTATCCCGATCT 56177 29 100.0 32 ............................. GAGATGGGACGCCTCACTCAGGAACGGAAAGC 56238 29 100.0 32 ............................. CCCGTCGCGTACGTGGTCGGCGTCCTCGGACT 56299 29 100.0 32 ............................. AGGAAGCCGCCCTGGTAGACGCTCTCGTCCTC 56360 29 100.0 32 ............................. GCGTCGGCGAGGTCGTGGACGAGCCGGTAGTC 56421 29 100.0 32 ............................. GCCTTCGAGGAGCAGCTGCGCGAGGCACGGCA 56482 29 100.0 32 ............................. GCCGACGGCGTGCCGACCGCCCTGCGCCGCGT 56543 29 100.0 32 ............................. GTCCGACGCAATCAGTGCCAGGATCACCTACT 56604 29 100.0 69 ............................. CCCCCCCCCCCCCCCCCGGGGGGGGGGCCCCCCCCCCCCCCCCGCGTGAGCGGACTGCGGCCATGATCC 56702 29 100.0 32 ............................. GTCGTCCACCAGGACGAGGTCGCCGGGCTGGA 56763 29 100.0 32 ............................. GGACGTCGCACCGCGGCTGCTGCCCGCTGAGC 56824 29 100.0 32 ............................. CGGTCTGCCGTACGTACTGGAGAACGTGGAGG 56885 29 100.0 32 ............................. CCGCCCAAGGACGGCGACCACACGGCGAGCGT 56946 29 100.0 32 ............................. CACCCGGCCAATCAGTGCCAGGATCACCACCA 57007 29 100.0 32 ............................. GGTGCGAGCTGCTCCGCGGTCGCGTCCCGTCC 57068 29 100.0 32 ............................. CGCGGACACGATGCCGGTCAGGACGTTGACGA 57129 29 100.0 32 ............................. CGGCGGCGGCAAGGGTGCCTCGGGCAGCGGGC 57190 29 100.0 32 ............................. GCTCCGGACGACTCAGGGCGGCCGGTCACGGC 57251 29 100.0 32 ............................. GCTGGCCGGTGCGCAGCTCCAAGTGCCGCTGC 57312 29 100.0 32 ............................. AAGATTCGGTTTGCCCCTAACGGCAACATCTA 57373 29 100.0 32 ............................. GAGGGCGACGACCCGGACCAGCAGTGGGAGTG 57434 29 100.0 32 ............................. GGTGCAGAGGGGTGGTGGCAACGTCTCCGGCG 57495 29 100.0 32 ............................. CCGGCGGTCAGGAGGTCGAAACCTTCCTTGCC 57556 29 100.0 32 ............................. CGGTGTACGCCTCGGTCTCAGGCACCCGGTCG 57617 29 100.0 32 ............................. AACGCGTGACCGCCATCGGGGCGAATTCGGAA 57678 29 100.0 32 ............................. TGGTAGTCCTCGTACTCGGGACCGTCGGGCTG 57739 29 100.0 32 ............................. GCCGGCAGGCAGGACGATGGCGGAGGCGGCGG 57800 29 100.0 32 ............................. ACGTCGCTCTTCGAGCCGTACTACAAGTGGTC 57861 29 100.0 32 ............................. GTCGGACTGCGGGACGTGACCATCCTCAAGGT 57922 29 100.0 32 ............................. CCGCAGGTCACAGGCTTGCGGTTCGGGAACGA 57983 29 100.0 32 ............................. AGCGCAGTCCTCGGAGTGAAGAGCGGCATGAC 58044 29 100.0 32 ............................. AGGCCCACGAGGAGCTGGTTCTTGTCGAGGCC 58105 28 96.6 0 ............................- - Deletion [58132] 58126 29 93.1 30 A..G......................... CGCATGGTGCAGGCTCCGGTCCCGCAGCCG 58185 29 93.1 32 ..........T..............C... GGGATCATCCGGGCGTTCGAGAAGCTGAAGTC 58246 29 86.2 32 ........T.T......A......T.... TCCGGAGTGGCCGAAGAGTGCTGTGTCATGAG 58307 28 86.2 32 .A.......A..-...T............ AGCACCGGGATCACCGCGTGCATGGCGACGCC 58367 29 82.8 0 ......................CTTC.G. | ========== ====== ====== ====== ============================= ===================================================================== ================== 38 29 98.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CAATCCTCGCCCCGCTCCGACCTGGTGCGCATCAGCCCCGTCCCGAAGCACCACACGTCGAATAAGACGACCAGCAAGCACACACGCGAGCAGCCCGCTCCGGATCCCGTCCGACCACAGCACCCGGCGGCTCCCTCAACACCTGACTCACAAGCGCAGCCCTTCGCGCCTCCCCGGACGAAGTCTCGCCCGGCAACTCGGCGGTCCGCTCCCGCAGCGCCGGCGGCCCGCCCACAGCCGCAGGCTCCACCTGAGCAGATGCGCCAGCTATGCCATCGAGCCGACGGAATCGCCCAGCCCGGCATCGTGGGACTGTGCCATCAGACATGGGGGTAACCGGGCAGCCACGCCTCCGCTGCCCGCTGAACGGCCATCGTTCCTGCTATCCAGGTCCTCGTAGACGCCCTACGGAGACACACTGCCCGGTGTCCAATTTGCCGGATTCTGCAAAGTTCACTGGAAACGCGCCTGCGCGCCCATAGAATCCCAGGTCAAGCAGT # Right flank : CCCGACGGCGCACTCGGCGGCGTCCCCATCCATGCGGGTGGGGACGCCGCCCGGAGGGGCGGACTCAGTAGGCCAGCGTGATGCGGCTCTCCGGCTTGTTGATCACGTGGCCGGGCGCGGTACCTGTCGCGGAGAGGGTGACCGTCATGTGCGGTACTGCCAGGCGGGCGGCGCCCCATGCGTCGATGTGGGCGATGAGATCGTGGGCCAGCTCCTCGCCGCGTGGCCCGTATGCGGCCGCGCCGAGCCGGAACGGGCGATCCGGGTCGACGCCTTCACGGGTCACGGTGAGGTAGGCGAGGGAGCCGCCTTCGACCAGGACGGGGCTGCGGCCCGGTGCGGCGGGCCGGTGGATCAGGGCCTGCTCCTCGGCCTCAGGGGTGACTTCGAGGCGGCATACGCGGTCGTCGCCGGCCGTGGCGCGCAGCCAGACTCCGTCGAACGACTCCTCGCCGCCGATCCGCTGGGCGGACAGGAAGGAGCCGGCGGGCTTTTCCGCC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 69197-71789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCE01000032.1 Streptomyces violaceoruber strain NRRL S-12 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69197 29 100.0 32 ............................. GCGCGGGTGTTGATCGGGTGGGGCTGCACCTT 69258 29 100.0 32 ............................. TCGGGCTTGCGCGGTCGGTACGCCCTGATGAG 69319 29 100.0 32 ............................. GCCTTCACCTCAGGCGTGAGGTGGGGCAGGAT 69380 29 100.0 32 ............................. CGCCCGGCATACCGCCACGTCGCCGATCAGAT 69441 29 96.6 32 ............................G GCGACGCCTACCGCTTCCTGGACCTCTCCCAG 69502 29 100.0 32 ............................. GCGGACATCGCCGAGCCGGCGGCTCGGTTGAC 69563 29 100.0 32 ............................. CGAACTCGAGGCGTCGTCCCTGCGGCCGATCC 69624 29 100.0 32 ............................. GCGGCGTCGGCCAGGGCGTCGTCGTATTCGGT 69685 29 100.0 32 ............................. CCCGAGTTCGGGACGGTGGCCTTCTCCATGTT 69746 29 100.0 32 ............................. GTCGCGTCCTCCCGGCCGGCCTCCGAGATCAG 69807 29 100.0 32 ............................. TCGGTGGCGGCAGCCAGCATCCAGGCCGGTGC 69868 29 100.0 32 ............................. CGAAACCCACCGCCTTGGGAAGCTCGACGCCT 69929 29 100.0 32 ............................. GTGTCGACGTGGAACTCGGCGTTCTGCTCCTC 69990 29 100.0 32 ............................. AGCCGTATCTGGGTGGCGTAGGCGGGGCTGGT 70051 29 100.0 32 ............................. CGCGGCAAGGGCAGCCGGAAGGCCGAACCGCA 70112 29 100.0 32 ............................. ATCCCGCCCACGGCCGCGCCCGCGGCGGCGGT 70173 29 100.0 32 ............................. CGCGAGCTCCGGCAGACGCTCGCCCAGCTGCT 70234 29 100.0 32 ............................. ATCCACGACTTCGCCGCCGCCCACGGCGTCCA 70295 29 100.0 32 ............................. CCGTGCCCAGCGACGCGAGGCCAAGGCCCGCA 70356 29 100.0 32 ............................. GGCCGGCGCCTCCCGTCCGGTCGTGATGCATA 70417 29 100.0 32 ............................. GGCGAGACCCGCAGTCGGCGGATCAGGCGCCA 70478 29 100.0 32 ............................. CGTGTTCCCGGCCTCCCAGATCTTCACGTCGG 70539 29 100.0 32 ............................. AGGTTGTCCGGCGCGGCCTCCTCTCCCTTCCG 70600 29 100.0 32 ............................. TAGCGTCGGAGAGGGAGGGCTGATCATGACGG 70661 29 100.0 32 ............................. GGTCCCGAAGCCCGAGAAGCCTTGGACGCGGT 70722 29 100.0 32 ............................. GTGACCCCTCTTGTGGAGGGGATGCTCCTCCT 70783 29 100.0 32 ............................. GCGAGGCCGCGCCTGTACGGCCCCGACGCCGT 70844 29 100.0 32 ............................. TCCTTCAGCGCGTCACCCATCTTGTCGATCTC 70905 29 100.0 33 ............................. CCCCACGAGCCGGGCCCTGGCCGCGTGGGACCG 70967 29 100.0 32 ............................. GATCTGGAAGATGCCCGAGACACCCTCCACGT 71028 29 100.0 32 ............................. ACCCCGGTGCGGGTGTCGGTGAACACGGGGGA 71089 29 100.0 32 ............................. GGGAAGTCGTCGGGGTCCGACACTGAGGACAT 71150 29 100.0 32 ............................. CCGCAGGCCCTGGACGGCTGGGTCGTCCTGTC 71211 29 100.0 32 ............................. ACCGTGCTGTTCACGACCGTGATCGTGCCGAG 71272 29 100.0 32 ............................. CTGACGGATCGCCACCCAGACGCCGGGTCCGT 71333 29 100.0 32 ............................. AGGGCGACGGCGGTCAGTCCCCAGCGGCGGGC 71394 29 100.0 32 ............................. GACGCCGAGGCCCGCGCGGTGCCCGATGACCT 71455 29 100.0 32 ............................. ACGAAGACAGGAGCCGTGACGCTGTCGGCGTC 71516 29 100.0 32 ............................. CCTCGCCCTCTGTGCGATCTTCCCCGTTAGCT 71577 29 100.0 32 ............................. GCCAACCCCCAGACCTTCGCCTCTGGTGACCG 71638 29 93.1 32 ...T..................C...... GAGAAGCGGCGCCCCCGCCGGGAGGGTCCGGA 71699 29 96.6 33 ...........T................. CAGGTCCAGCTCCCGGCCGGGGCCGTCCCGGTC 71761 29 93.1 0 ....................C....T... | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.5 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : GCACCACCTCCACACCGGGCACGTCCACGCCGGACCGGCCGCGGTTGAAGGTGGTGACGTCCCACCCTCTCGCCAACGCGGTCTCCACAATCGCCTTGCCCAGAAACCACGTTCCGCCCATGACGAGAATCCTCATGCCCCGATCCTGCCCTGCCCGGGGCGCAGGCGACAGGGCGGGCTACGCCGCAGGCAGGCATCCTGGATGCGGGGGCGTGCACGTCAGGGGTGCCTGCAACGCGGGAGCGTGATCCCTCAGCACCTGCTCGACCTCGACACCGACGGAGCCCTGCACGCCAGCAGGCCGCGGAGGTCACCAGGCATCAGCTCAAGCCGACACGCGAGCAGTTCCAGCTCGGCCGCATCCCGAATTAGTGTGAGGGGGCTGATCGGCCAGCTCTGGACTGCCTATGGATCGGACACCTCCCATGTCGCATTTGCCGGAATCTGTAAAGCTTACTGAGAACGGGTCCCCGCGTCCGTAAAGCCGCAGGTCAATCAGT # Right flank : CACCAAGCTCGCCAGTAGGCTCGCCTGCGTCGTCGGCGACTTCCGACAGTGACACGGCCCTAGTGACCGGACTGGGCACCGCCGGCCGGCGCTGAAAGGCATGGCTCAGCCTGGACAATGCTGCGGCGCTCCTGGTCGACGAACCCGAGGACCTGGGCGACCAGAGCCTGTGAGTGAACCCGCCCGAACTCGACGCGCGACGTTCCACCCGACGCCGGGGTGCCCTCACCCGGGTCGTGACGGCAGGAGTCTCCATGTCGGCGCAGCGGTCCCGGACCGAGCAGGGCCTGCGCTCGTGGGAGAGCCTCGACGAGGGGCCCTTCACCGAGCTGATGAACGATCTGGGCCTTCCCGGCGCTGTCGAGCTCGCGTCGGCTCCGTGACCGCCGCCCGCACCAGCAGTCGCACGGTGAACAGTGCTGACACTAGAGCCACTTGACGACTTGCTGAACAGGGCGCCCCGTCCCGGCCGATCCCGTAGCCTGCGCTGTACGCAGCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //