Array 1 534788-534339 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000005.1 Streptomyces uncialis strain DCA2648 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 534787 30 93.3 39 ........................A..C.. GACCACCCGCACAGGAACAAGTACACCCAGCGACGAGTA AG,AA [534761,534782] 534714 30 93.3 39 ............A..............C.. GACCACCCGCACAGGAACAGGTACGCCCCGCCGGGGAAC 534645 30 100.0 39 .............................. AACGACCCGTACGGGAACAGGTACGCCCAGAGGTGGAAC 534576 30 93.3 40 ..T..........................C GAGCGACCCGCACAGGAACAAGTACACCCAGCGACGAGTA 534506 30 93.3 39 ............A..............C.. GAGTACCCGCACAGGAACAGGTACGCCCCGCCGGGGAAC 534437 30 100.0 39 .............................. AGCGACCCGCACGGGAACAAGCGCGGTCAGCCGGACGGA 534368 30 96.7 0 ...........................C.. | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 95.7 39 CCCAGGGGCGCGGGGAACTGCGCACCCACG # Left flank : AGCCGTATCCAGGGCCTCACCGGAGCAAAGGGCGACTGACGGCCGCACCCCGACCGAGCCGCCCCTGGGTTCCCCGTGCCGGGCGCACAAGTTCCTGTGCCGTCGCTCGTGGGTGCGCAGTTCCCCGCAGGTCGCCTTCGCTTGCGCCCCTGGGTCCGTCCGGCTGGCCGCGCTTGTTCCCGTACGGGTCGTTCGTGGGTTGCGCAGTTCCCCGCGCCCCTTGGGCAGCGCCTCTTGCGGTGGCTGTTCGCCTGCGGGTGGCGCCTGGTTGCTCGCGCAGTTCCTCGCGCCCCTGGGTCGTCCCGGGTGGGCGTCGCACGTCCTGTGCGGGTGGTCCGTTGGTGCGCAGTTCCCCGCGGGTCGCCTTCGCTCGCGCCGCTGGGTTTCCTGTGCTGGGCGCACTTGTTCCTGTGCCGTCGCTCGTGGGTTGCGCAGTTCCCCGCGCCCCTGAGATCGCGCCCCTTGCTGCCCCCGCCCGACCGCGGGTCACCAGGGGGTGC # Right flank : TCGGGCCCGTACGGGAACAAGTACGTTCAGCCGGACGGACCCAGGGGCGCAAGTGAAGGCGACCCGGACAGGGACACGTGCGGCCGCAGGGACGACCACGCCCCCCGGGAAGGCTATTCGCGGCGGGGGAAGACCAGCAACGCCCCGGTCCGGGGATGGGGGAGTACCTCGACCGGCTGGCGGTAGACCTCCGTGAGGGACGCGTCCGTGAAGACCACCCCGGGCGCCCCGTCCGCCACCACCCGCCCGTCCCGCAGCACCGCCACCCGGTCCGCGTACGCCGCCGCGAGCCCCAGATCGTGCAGCACCACGACCACCGCGTCACCCGCCTCGGCCCGCCGCCGGCAGACCCCGAGCACCAGCTCCTGATGGCGCAGATCGAGCGCGGCGGTCGGCTCGTCGAGCAGCAGCAGCGACGTCCGCTGCGCCAGCACCCGCGCCAGCGCGACCCGCGCCCGCTCACCCCCGCTCAGCCCGGAGAACGCCCGCCCGGCGAAGTC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGGGGCGCGGGGAACTGCGCACCCACG # Alternate repeat : CCCAGGGGCGCGAGGAACTGCGCACCCCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 376100-374670 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000001.1 Streptomyces uncialis strain DCA2648 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 376099 28 100.0 33 ............................ CCGGCCGAGGACGTCGCTGGAGGCCTGGTACTC 376038 28 100.0 33 ............................ GCAGAACATCATGTACACGGCCCCGGTCACCGG 375977 28 100.0 33 ............................ TCTATGTCGGAGACGGCTGGATCATCGACGCAC 375916 28 100.0 33 ............................ TCATCGAAGTGACACGCGCATCGCCTCTCGCCG 375855 28 100.0 33 ............................ CCTGGCGTACCGGGACGCCTACCAGCAGATCGC 375794 28 100.0 32 ............................ CGTCGACCACGCCCTCCGCAAGCCGGTCCTCC 375734 28 100.0 33 ............................ GCGAACGCGTAGGCGAGGATGATCGGGCCACGC 375673 28 100.0 33 ............................ CACGCCTACGGTGACACCGACGCTGGTGAGCGC 375612 28 100.0 33 ............................ GCCCGATCAGTGATCGTGCGTAGCGGACGATCT 375551 28 100.0 33 ............................ CCGCTATGGCAGACGTCGAGGCGCAGAACACGG 375490 28 100.0 33 ............................ GGTGTCCTGACCTCGGGTGTTGGGTGCGGTGCG 375429 28 100.0 33 ............................ GCGGACGAGACCGACGACCAGGCGCCGCGGCCT 375368 28 100.0 33 ............................ TTCGCCCCGCGATGTGTTGCGGTTTGCGCTCTT 375307 28 100.0 33 ............................ GTGGGCGACCGGGCTGAAGGACTCTGCGGGGTT 375246 28 100.0 33 ............................ CAGCTCCTCCAGTGGGCTGTCCGCTGGTGCCGG 375185 28 100.0 33 ............................ TCGCTCCAGCTCAAGAAGACGACCGCGCAGTCC 375124 28 100.0 33 ............................ CGGCGGATGCGGAACCCGGACGGCTATGTGTCG 375063 28 100.0 33 ............................ GTCGACGTATCCCGATGTGGCCCTTCAGCTTGC 375002 28 100.0 33 ............................ ACGCACGGTGCGGGTCCGTCGTGGTCCGCCCCA 374941 28 96.4 33 ........................C... GCCCGGTCAGCAGCGCCCGCACCCGGAGCTCGT 374880 28 96.4 33 ..........T................. GCCGAGCTGCACGCCTTGGACCGCGCCCTGGTC 374819 28 100.0 33 ............................ CGTCGCCGCTTCGGCCGCCCGCCACGCCGCCTC 374758 28 96.4 33 ........................C... GGCCCGGCAGGCGCAGCAGTCGCTCGCGGACCT 374697 28 96.4 0 ........................G... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.4 33 GTCGGCCCCGCGTGTGCGGGGGTGTTCC # Left flank : CACCCGAGCCCCGCCGCGCGGACGGCGTCCGCGCCCTTCGGCCACAGTCGCTGATGGGACGGGGTCGCCTTCCCGCAGTCGTGCACACCGCACAGCCAGGCGAACAACGCCCGGCCCTTTCCCGGTCCGCCCGCGAGCCTGTCCAGCATCCGGCGGCCCGACGGCGCGAGGAACCCGTCCCACATCCGCTCGGCCACGGCGGCCGTGTCCAGCAGATGCGACACCAGAAGGTTCATCGTCCCCCCGGCCCGCTCCTCGGACTTCCCCCACAGCACCCCGAGCGCATCGACGTCCCCACGCCGACGAACACTGTCCGTCACGCCATGCCCCCTTTGTATGCTGCCCTTCAACGTAGACCCACCCACTGACAACGCCCGCCAACTGAGGAGCAGTTCATGTGTACCGCAGCACGGAGGGAGGGGCCGCGCCACGTCCCCGCGGCGACGACACGACTAAAGGAAAACGGCCCTCTGCGGTGACAGGACCGCAGGTCAGGAAGG # Right flank : TCGACGGACTCGAACGAGGCATCGCCTCCGAGCGGCCCGCGTAACCCGCGTAACGCGTACATCGGCACGCCCCACGTCGAGCACGCCCAGGAACCCACTCCCCCGAGTGAACGTGTGGCCGGGCTCAGCGAACGCCGGGCCGGGGACCGTCAGCCCAAGGACACTGGCTCTCCCGAAGAGAGCCTGAGGAGGCCCGGAGTTGGCGAAGTCGTTCACCACCACCATCGGCGGCAGCAAGGTCGAGCTGCCCGGCACGATCCGTACCATCCGTGAAGCGCTGGCTCCGGAGCTGGTCGACGCCTTCATCGAGGACGTGGAGGACGCCGGGCCGGACGAGGTCCCCGGAGTTCTGGCCCGATGGGCGCTGCGTACGCCTCAAGCCCATGACCCGGGTGAGGAAGAGCAAGTCGCCCGCATCCTCGACGGGGATACCTCAGGCCTCGTCTACGCGGACGAGGGCGACGAGTACAGGAGCGCCGGGTGAGCTTCCGGATCGCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGTGTGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 768696-768422 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000001.1 Streptomyces uncialis strain DCA2648 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 768695 30 90.0 31 ........G...C........A........ CGGAGAAGGCGCGCGCTGCGGCTCAGTCGCT 768634 30 90.0 31 ............C...............GG CCCCGCTATCGGTGGCGAGGTCGATCTGTAC 768573 30 93.3 31 ............................TC CGAGCTGCGGATCGGTGACCTCACCGACCAA 768512 30 90.0 31 ...................A........GC AGTCGAGCAGGTGGGCGTGCGCGTCCCACAG 768451 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 92.7 31 GTGGTCCCCGCAGGCGCGGGGGTGGTCCCT # Left flank : CCCCGTATGAGCTAGGTGAACGTCGACCGTTCAAGCGGCAGGTCAACTTGTTGACCATGGCGGATCGCTCCGTGATGTCCTATGTCGAGTCTGAGACCCAAGGTCACCTTGACCGCGAACCGGCTTCCGTACTGCCGCTGGTGAGGACCTACCATCAGCTTCAGGCCGTGTCACTCTCCCAGACGGCCACCGTAGAAATGATCAATGAGGTTCGAAAGGGCACCCGATGACTACCGACTCCTCCACTTTGATATGGGTCAAGTCCTCTTACAGCGGGCAAGGTGGCACCTGCGTCGAATGGGCACCCAAGAGCGCGACCACAACCGGCATGGTCCCCGTCCGGGACAGCAAGTGCCCAAGCGGACCCGTTCTGATGGTGTCCACCCACGCGTTCGCCGGGCTGGTCAGCCTCGCTCGGTCAGCTGAGCTGTAGAACCGCGCGGCCCCGTCCGGTGACCGAAAACGGCCCGCCCCCGTGAGAGACCCGCAGGTCAGGAGGT # Right flank : GCGGACATCTGCCTTGTAAGTACGGCTGTGAGTGGTCCCCGTACACGCGGGACCTTCCGGAACGGCGCCGGCTACCGGACGCGGCCGACGAGGTCGATCGCGATCACGACTGGCTTGTTCTGCGTGATGGTGTACCAGACCCGATAACGGCCGACATAAATCCGGTACTTGCCGACGCCATACTCCTTCCTTTGCCCCAGAAGGACGGGGGTTGGTCGGCAGCAGATTGACGCTGTCGAGTCCCTGATCAACGCCGGTGGGGTCGTTCTTGCCGTATCAAGTCAGCGCGTCCTCGGAATCCTGTTTCCAAAGGACCCGGCCTACGGGGCCATTCGCCCGTTCAGTTCGTCCCTCAGTTCCTCGGTGGTCACCGTGTTGGTGGTGCCGCGCAAGCGGTTCACCTCGCCCTGGAGGAGCCCAAGGGCGTCTTCCTGGACTTCCAGGACGGCCGGGGAGATGACCACTGCGACGGTTTCGCCGGCGTCGTCCGTCAGCGACAA # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCAGGCGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 773901-773204 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000001.1 Streptomyces uncialis strain DCA2648 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================= ================== 773900 30 100.0 31 .............................. CTCACCAACCGCAACGCATCCGCCACCTTCA 773839 30 100.0 31 .............................. GGACCAGGGCGAGCCTCCGCCATGTTCCGTG 773778 30 100.0 31 .............................. GGTAGACGAGGTCGTTGACCGTGTCGTTCGG 773717 30 93.3 31 ............................CT GACAGGGAGTGACCAAGTCGGCGCTGTGAAG 773656 30 96.7 31 ............................C. TCGGACACGAAGTTGCGTCAACTACTTCGGA 773595 30 93.3 31 ............................CT CGCCGCCGTTCCCCGCGGCCTTCGACGCAGA 773534 30 93.3 31 ............................CA GCGGATTCGTCTCCACCATCCGAGCCGCCCA 773473 30 93.3 209 .........................C...T AGGTCTGCGCTGCGGCGATCGCCGGCTGGCGGTGGTCCACGCAAGTGCGAACGCCCTTGGCTGACCGTGCTGGGTGTACGCCATGGTCAGTGAGTAGGGGAGACCAATGACGAATCCCCGTCCGACACTTGGCGAACGGGACGGCGCGCTGTCTGCGGGGTCTAGCTGTGCGCCGCGTGGTCGGTGGTGCAGGGGCCCCGGGTGTGGAC 773234 30 70.0 0 ......AG.....A..TA......A.G.TG | T [773215] ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================= ================== 9 30 93.3 53 GTGGTCCCCGCACGCGCGGGGGTGGTCCGC # Left flank : ACCGCGCAGGTTCGCTACTCGCTGGGCGACGTCGCGGGTAGCGTCGATTCCCGCAAAATCCATTTCCAGTTGAGAGCGCCGACCGACCGACTCCCGACTCACCGAAATGCGGTTCCGCACCATGCTGGCGGAAAGGCAACTGGAGCTGGGGCATCTGGAACTGGCTTGCGGCACATGGGGGCAGGTACTCGACGAGCACACCGGACTGCACTCGGGGGCCGTGGACACGTTCGTCGCGAACATCCGTACCCGTCTCCGCAGTTACCGGTCCAACCCGGTGGCGCGGGAAGTCTACGAACGAGCTCTAGCCGACGCCAAGCCCCGTCGATGCGCGACCGGGTGGCGCCCGAAGAATCTCCGAGGACGGTTGTACCCTTCCGGGACGGAGCAGGTCACGAGTGCACATGATCCGCACGGAGGGGCTCCGAAGACGGCCACGGGGTGCGATGCGACTAAAGGAAAACGGCCCGACCCCGTGAGAGACCCGCAGGTCAGGAAGT # Right flank : ACGCTTCCGCTCATGGCCCCGTACCCGATCACCACGGGTGCTTCGGTCCAGCGTCCGCACTTGCAGCAGTGTTCACCGGAGATCGGGGGCACTTGGGGGAAGGGGTTGTCGTGCGTCATGCGGACGCTCCCACCCGGGCGACGTGGGAGCTGTCGAACGTGAACGGGATGTCCACACCGCGTGTGGCCGCTGCGGCTGCCTCTCGCCGTTCGCGCTGCCGCTCCCGCTCTTCCTGCTCATTGATCCACCCCCGGAGGTAGGGAGGGATGCGGGGCCCCCACGGCGTGGGTGCGGTCCGGGCGAGGACGTGCAGCGGGACGGGGGTCCGGGGTGCGCAGATGATCAGCGGCGCGGGGGCGGACCGGTTGCCGAAGTGCTCGGCGGTGTGCCGTCCGGGACAAGTGCGGCGGGTCCCCGGAAGTGTGGACAGCACCCATGCAAGGGCGCGGGCGATAGAGTCGCGCATACGTCGTTCAGCTCCTTAGCAAGCTGTCTCGGCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-2.29, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCACGCGCGGGGGTGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 777427-776604 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000001.1 Streptomyces uncialis strain DCA2648 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 777426 30 100.0 31 .............................. TTCTCGCCGTCGCTGCGGAGCCTGCGACGAG 777365 30 100.0 31 .............................. TTCTCGCCGTCGCTGCGGAGCCTGCGACGAG 777304 30 100.0 31 .............................. CCGAGCGGGGTACTCGTCCGAGTCGCCGTCA 777243 30 96.7 31 .............................A CGTACGACATGGCGCGTGCGACGGCGGCGGG 777182 30 93.3 31 ............................CC GCATCGACGGGGTCGAGGACGGCCTTGTCGC 777121 30 96.7 31 .............................A TCCGGCCCAAGGTGCCGTCCGTCACCACGAG 777060 30 96.7 31 ............................C. CCACCATCGCGCCATCGATGCCGATGGGGAA 776999 30 93.3 31 ............................CA GCACCGCGCTCCAGGGCTACATCGAGGACGG 776938 30 96.7 31 .............................T ACAAGTCCGGCAACATGATCTGGTCCGGCGG 776877 30 96.7 31 ............................C. GGCGCCTGTCCGTCCACTCCTCGCTGAAGGA 776816 30 96.7 31 .............................T ACGCGATCCCGATCGGGAGTGACGGGCAGAT 776755 30 93.3 31 G...........................C. TGGGCTGAAACTCTGTGACCCCCGGGCAGAC 776694 30 96.7 31 G............................. GGTTCACGGGGGCGCCGTAGGGGCTGGTCCG 776633 30 90.0 0 G.......T....................A | ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.2 31 ATGGTCCCCGCACGCGCGGGGGTGGTCCGG # Left flank : CGCTCGTGGGTTTCGCGCAGTTCCCCGCGCCCCTTTAGGGCGCGTCCGGCCGGTTCTTCGGGTCGGTGCCGGTCGGGATTCTCCGTCCTCGATCCGACACGCTCGGTACGACGTCCCTCTTACCCGACTGAAGAGCATCGGAGTCTGCGGGCAGAGATTCCCGCCCACCCCCTTACGTGAGTCCTGCGGGTGCGCGCGGAGGGGGGGTTCCACGCCCACCCGATTGGGGCGCCTCCGAGGGACGCGGGGAACTGCGCATCTACGTGACGGGGGTATCCCGAGGCCAGCCCATTGCCTTGCACGGCCGGGGGACCTTGGGCAGCAATCAGCCCATTCTTACGCCCCGTTGCGACGTTGGATGAGAGTTGTACGCTTCCTGGACGGAGCAGGGGCGCGGGTACACGTGATCCGTTCGGTGGAGCGCCAGAGATGGCCACGGGGGCGCGATGCGACTAAAGGAAAACGGCCCGATCCCGTGAAAGACCCGCAGGTCAGGAAGT # Right flank : GCTGCTGGAGGACTGGGAGTCGGGCGGCCGGTGGGGCCGTTCCGTGGTTACGGCTGTCGGGAAGGGCGGGGGGCGGGGGTGTCGAGGAGGTGCCTGAACTGGGTGTTGCTGGTTGCTGACCCTCGTTCTCCCACCTGGGCGATCGCTTGTCGGCACGTCACGCGTACGAACGTCTCGACCGCTTTACGGTGCGCCTGCTGCCAGCTGGGGACGCCGGACAGCCACGCAAGTGCGTCTTCGGGTGTCTGCCCGAAGCGCATGAGCCATCTCGCCGTATAGGCGGCGTCGACCCAAGCGGGGCCGAGCGCAGGCATGGCCCAGTCCACGAGGCAGGCGTGTCCGTCGTGGTTCGGGATCAGCATGTTGTGCGGGTTGGTGTCCGTGTGGAGCAGGTGCGTGCCGTGCAGCACGTCCGCCTCTCCGGGCTTCAGGTGTCCCGCGAACCGGTCCGAGAGCTGTGGAACAGGAAATGCTGGAGCCCGCAGGCTCTGCGTGCGGCG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCACGCGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1418982-1419221 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000001.1 Streptomyces uncialis strain DCA2648 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 1418982 24 100.0 49 ........................ GTCGCGCCTCTTGCGGTTTCCGTGCGGGTGCGGATGGCCCGTGGTTGCT 1419055 24 95.8 45 C....................... GTTCCCCACCTGGACGTACTTGTTCCTGTACGGGTCGGACGGGGG 1419124 24 100.0 48 ........................ TGGTGCCCCATTACGGTCGCTTTTCGGGTGCGGGACCGTCCTCGTTTT 1419196 24 100.0 0 ........................ | TT [1419216] ========== ====== ====== ====== ======================== ================================================= ================== 4 24 99.0 48 TGCGCAGTTCCCCGCGCCCCTGGG # Left flank : CACGGCTGCGCCGCGGCACCAGCCCCGAACTCGACGGGCAGCGGGCCCCGGCGCCCGTGGACCTGCCCCCGCCCGGGACCACCGGCCGGCCGGTGCTGCGCGCGGCCGACGAGACGGCGGAACGGGACACCGACGGGCCGTCCGGCGGCGGTGTGCCGCTGCGGCGCAGGAACCACACCGACGCGCCGGTCACCTGGTCCGGGATCGCGGGCAAGATGGCCAAGGACCCGACCATCCGGTACACCGAGGCGGGCAAGGAGTTCTTGCAGTGGATGGCCCTGCACGCGAACGATCCTGACGGCTGGCGGGAGTTCGTCAGCTCCATCCCGGAGCACTGGCAGAGCGTGATCGCGCCGATCGCGGAGAGCATCGGCCGCGAGTGGAGCACGTTCGCGGAACGCCTCAAGACCAAGCAGGAGGCGGTGTAACGGGTTACCCTCGCTCGCGCTTCTGGGTTCCCCACCTGGACGTACTCGTCCCCACACAGGTACGTCCGTGGG # Right flank : GGGCGCCTCTTGAGGCTGTCGGTCGGGTGCGGAACCACTCTCCTCGCGCACTCGCCGGACTGCGGGAGGGGGTGGGCGGGAATCTCTGCTCGCAGACTCCGATGCTCTTCAGTCGGGCAACGAAACGAATTACCGAGCGTGTCGGATCGAGGACGGAGAATCCCGACCGGCACCGACCCAAAGAACCAGCAGATGGCGCCCCAAAGGGGCGCGGGGAACTGCGCAAACCCACCGAGCGACGGCACAGGAACGAAGTACGTCCCGCCGGACGGACCTCGCAAGCGCAAGCGAAGGCGACCCGCGGGGAACTGCGCAAACCCACCGAGCGACGGCACAGGAACGAAGTACGCCCAGCACAGGGAATCCTCGGAAGCGCAAGCGAAGGCGTCACGCGGTGGCGGCCACCGAAGGCAAGGCACTCGCAGGGCACCCCGCAGGGGCCAGCGGCGTACGCGGGGGCTCCAGATCGGGCAGCGCGAGCAGCACGGGCGGATCAGCCG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCGCAGTTCCCCGCGCCCCTGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 6 1574278-1574722 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000001.1 Streptomyces uncialis strain DCA2648 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 1574278 28 85.7 42 .........A..A.....C........A CCGAGCGACGGCACAGGAATGAGTCCGCCCAGCACAGGCGAC 1574348 28 96.4 42 .........................T.. ACAAGCGACCCGCACAGGAACAATTTCGCTCACCCGGACAAA 1574418 28 100.0 41 ............................ CGGAGTACCCGCACGGGAACAAGTACGCCCAGCCGGACAAA 1574487 28 96.4 42 ...........................A CCGAGTGACGGCACAGGGAATAAGTGCGCCCACCCGGACAGA 1574557 28 100.0 41 ............................ CGGAGTACCTGCACGGGAACAAGTACGTCCAGGTGGGGAAC 1574626 28 89.3 41 ............A.....C.....T... ACGGGCGACCCGCACGGGAACACGTACGCCCACCGGGCAGA 1574695 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================== ================== 7 28 95.4 42 CCCAGGGGCGCGGGGAACTGCGCACCCC # Left flank : CCCCGCGCCCCTTAGGGTTCCCCACCTGGACGTACTTGTTCCCGTGCCGTCACCCGGTGGGTGCGCAGTTCCCCGCGCCCCTGGGTTTCCTGTGCCGGGCGTACCTGTTCCTGTGCGGGTCGCTCGTGGGGTGCGCGGTTCCTCGCGCCCCTAGGGTTCCCCACCTGGACGTACTTGTTCCCGTGCCGTCGCTCGGTGGGTGCGCAGTTCCCCGCGCCCCTGGGTTTCCTGTGCCGGGCGTACCTGTTCCTGTGCGGGTCGCTCGTGGGGTGCGCGGTTCCTCGCGCCCCTGGGTCTGCCCGGGGGACGTACTTGTTCCCCGTGCAGGTACTCCGTGGTTTTGCGCCGTTCCCCGCGCCCCTGGATGCTGCCCCGATCCGTTGCTCTTCGGGTGCGGGGCTGCCCTCGTCTTCGCGCAGTTCCCCGCGCCCCTTTCGGGGCTCTCGATCCGTCGCCGGTCAGGTGCCGCCCGCACCCGACCGCCCGGACCAGGCGGCACC # Right flank : CACGAGCGACCAGCACAGGAACGAGTGCGTCCACCCGGGACAACCCAGGGGCGCGAGGCACCCACCAAGCGACCCGCACAGGAACGAGTGCGTCCGGCGCGGGCAACCGCAGGGGCGGGCCCGGGTAGGGGTCGGGTGGGGTCAGGGGCGGGTCATGCGGAGGACGTCCAGCGCGGCGTCCAACTGGTCGAGCGTGAGAACGCCCCGCTCGACATACCCCCCCTCCAGCACCACCTCACGAATCGTCCGCCGCGCGGCCAGCGCCCGCTTCGCCACCTTCGCCGCCTCCTCGTACCCGAGGTACTTGTTCAGCGGGGTCACCACGGACGGCGAGGACTCCGCGTACTCCAGCGCCCGCTCCCGGTCCGCGACGATCCCGTCGACCGTCCGGTCGGCGAGCAGCCGCCCCGCGTTGGCCAGCAGCCGCACGGACTCCAGCACGTTCTTCGCGATGACCGGCAGCATCACGTTCAGCTCGAAGTTCCCGGACGCCCCGGCCA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGGGGCGCGGGGAACTGCGCACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 324975-325552 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 324975 29 86.2 32 AC.......................C..T TCCCGGAAGAGGCGGCGGGCGCCGCATACATG 325036 29 86.2 32 AC.......................C..G ACCTTGCCGACGCCCCTGCGGGACATCTTGAA 325097 29 93.1 32 .........................C..G ACCTGTCCGTCAGGACTCCAAGCTTGCCCACG 325158 29 93.1 32 ........................A...T TCACGATCGAACAGGTCCTCAAGCCGCGGGGC 325219 29 93.1 32 ........................A...G CGGATGTGGTGGCAGCTCTTCGCCGTGGTGGC 325280 29 100.0 32 ............................. GCGCAGGACTGCGCGTCGTCACTGGCCTCGAA 325341 29 100.0 32 ............................. CTGTTCGAAGGCGCGGCCGAAGCCGGCCCGGC 325402 29 89.7 32 ...........AC...............G GCGCCAGATGTTGGGCGCGAGCGACGGCCGAG 325463 29 89.7 31 ...........AC............C... GGGGCATGGGCGGGGCGCGTGAGCCGTGGAT T [325488] 325524 29 93.1 0 .........................C..T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 92.4 32 GTGGTCCCCGCGTACGCGGGGGTGGTCCC # Left flank : CCATCCGATTGCGCCACATACCTGAGCCCCCGCCGGGCCCCGGCAAGTCGCCCCACTCGAAGCCCGTCACCCCGGACACCAGGACGAACGGGGACGTTCCGCACCCCAACACGCGCTGTGAAGCCGCAACTTACCCATGCCCCATGCACCGACCACGGGCACAGCCCCCACAACGCTGGCTCAGTTCAGCCGTTGCGAAGCCGGACAACGAGAAGGACCACCGGTTCCGACGACTGGGGCTGGCTTCCGAACGACAGTCCCGGCGGACACCGCACGGCAACGGATACAGGCGGCCACACCGTCCGGTACACCTCATGGATCACACGTACGGGCCCGCCTGGACCTCACAAACTAGGACGATCACCGAGAACCTGTCACGACGAAGCGCACAGGACTACCGGGTACACACCCGAAGGAGCGCGCGCTGGCCTCGCCCGGGGGGCCTGATCCGACTAAAGGAAACGGGCCTTTCGGCGGAAGAAACCCGCAGGTCGGGAAGT # Right flank : TGGATGGGCGCCTTGCAGCCCTGGCCACTGCCGCCCCCGCGTGGGGGTCTTCCACTGCTGACGACGAGTGTGGCGGTCAACGGAGAGTGAGCAGTGGTTCTGGCCGCGCTGCGTGTTGCCCACGGCCTCAGACAGGTTCGGTGACTGTGAGTCCGGACTTCAGTGAAGCTCGGTCTCCCACGCTTCGAACGGTGGCTCCACCTGGTACGCGGGGTCACAGCGTCTGCGGACCCATTGGGCCGCGCGGTACTCGGCATCGCCGTAGTTGAGCGTGTGGCCGTGCTCATCCACTTCGAGGACGTTGCAGAAGATCGCGAAAATCATCTCAAGGTCGGAGCCGAACACGAGCAGATGGGCACGGTAGTCGATCCCGTCCAGCAGCTCGACTTCCAGTGTGCCGTTGCCCAGGTAGAACGCGAAGAGCCTGAGAGCGGCCCGTACATCTGTCGGAAGGTGCGTCACAAGGTCATCTTCCATGAGAGCGGTGCAAAGCGATTGGC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 326385-327856 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================= ================== 326385 28 100.0 34 ............................ CGGCCCCTGCTTCGCCCTCACCAGGCTCCGGGCA 326447 28 100.0 33 ............................ GGCTTCGTCCGTGACGCGGACGTCGTTCCGGGT 326508 28 100.0 33 ............................ GACCAGGCGCGGCTGCTGATGGACGGTCGGCAC 326569 28 100.0 33 ............................ CCCGCGCCGTCCGCCGCCAAACGTCGCCTCCAG 326630 28 100.0 33 ............................ AGAACAGCTCCGCGCCCGCCGCCAGCAAGAAGG 326691 28 96.4 32 ........................A... CCCCCGCCCCCGCCGCCGGGGCCGCCCGCCCC 326751 28 100.0 33 ............................ TGGTCGACCCAGTGCAGCGGGACGTCGGCGGCC 326812 28 100.0 33 ............................ CTCCACCGGGCTGGAGTTTGAGCTGGAGTTGAT 326873 28 100.0 33 ............................ GGCTCGTCGCTGCCGCTGGAGCTGTGGCCGGTG 326934 28 100.0 33 ............................ GCGCCAGACGGTGTCCGACCGCCTGGAGGAGAT 326995 28 100.0 33 ............................ CGCGTTCGTGTTCGCCAGCGACCGGGCCTGCCC 327056 28 100.0 33 ............................ GCCGGGGCCGTCGAGGTAGTCGGCCCGCACGGT 327117 28 100.0 33 ............................ GGGGTTCCGGCCCGACTCCGTCTGGATCACGGC 327178 28 100.0 34 ............................ GTACGGCGGCTGGCCGCTGCGATGGACCCACGCC 327240 28 100.0 33 ............................ GCCGTGGCCCTTACCCAGGCAGTGGCACCCGTC 327301 28 100.0 33 ............................ CGCGGTCACCAGGTCGCCCTCCCGCCGCAGAAC 327362 28 100.0 33 ............................ GAGTCCGGCGCCAGCGGATACGTATGGTCGGCC 327423 28 96.4 33 ...............T............ ACGCGGCGGCCAGGAGGGCTATCGCCGCGGTGG 327484 28 100.0 33 ............................ CATCGTCCCCGACATCGACGCCGAGCTCGTGCG 327545 28 100.0 33 ............................ GATGGCTCGGTTGAGTTCTCGGCGACTCGCTGA 327606 28 100.0 33 ............................ CCAGTCGACGCGCCCCTCCGCCTCGGGCAGCGA 327667 28 96.4 33 ...........G................ CGTGTTGTCCTCCTGGCGCCGCCACGCCCTCTG 327728 28 92.9 73 ................G..A........ GATCAGGATGCTCCGCCTTCTCGCCTGCGCGGAGTGATCCCCGCGCGGGGATAGTCTGGAGCATTTGACCGCA 327829 28 78.6 0 ..G.T................CCAT... | ========== ====== ====== ====== ============================ ========================================================================= ================== 24 28 98.4 35 GTCGGCCCCGCACACGCGGGGGTGGTCC # Left flank : GGAGCCGAACACGAGCAGATGGGCACGGTAGTCGATCCCGTCCAGCAGCTCGACTTCCAGTGTGCCGTTGCCCAGGTAGAACGCGAAGAGCCTGAGAGCGGCCCGTACATCTGTCGGAAGGTGCGTCACAAGGTCATCTTCCATGAGAGCGGTGCAAAGCGATTGGCTCGCCTTGCTGGCGGCCAGCCCTCGGCTGGACATAGGCGAAGCGCAGACTGGAGGCCTCAGCGAGGACGACGTGGGCGGGGTGCTGGCCGACTCGACCGGTGAGCCAACACGTCAGGTCCGCCCGGCGTCTCGGAGCCGCGAGCCAACCTGCTGGATCACACCGCCCAATGCGGATTCCCTCATAGGCTTGCTCCATCGTGGAACCCGGCCAGTCGAACGGTGGATGTCCACCGACCACTTCCACCGAGAGGCAACCGATGCCGTTTCCGAGGCCCCCGACCCCACTAAAGGAAAACGGGCTCTTGGCCAGATAAACCCGCAGGTCAGTAAGT # Right flank : CGGACGCTTGCGCAGACATGTCGGCTTCACCATCCAAGGGCCCCGCTCCCTCAGTGATCAGCCGGGCCGCAGCCAGGTCAGCCGGTCCGCCCGCCATGCACCGCGGCTGTCCGGGAGGCAGGACGTGGCCCCGCGCGCGAACGCGAGGACCCGTCGACGACACGTCAGCCTTCTTGGTGCGAGGCAGTCGCCGACTGTCCATGGCCGAACGCGCCACGCATATGCGGTTCGTGACCAGATCCTCCGCTGTGGCTGATCTTCCAGCGTGGTGGGATCGGTCCTGCGCACGGGGGAGCGCATGCACCGATTCTGGCTCCCGCGTGTGCTCGACACGGGGAGTGATGGGGTTTGCGATTCAAGAATTTATGCGCGACAAGCAGCGCCGCTCTGGTTCTGGTTGCCGGCCTGACGGCTGGTCCGGCCTCAGCGACCCAACCCGCACCACAGGGCTCAGTCGGCGCCGCCGCCACAGCGCCGCCCGGACCGACGTCCGCAGGCGG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 330080-330597 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 330080 30 90.0 31 ....G........A..............G. CAGACGCGGCACCGTGTCCATGACGACGGTC 330141 30 100.0 31 .............................. GGAGGACGCGCACGAATCCGCGCGCCGGGAG 330202 30 100.0 31 .............................. TGTTCGCCGGATGCGGCCCGGATCAGGGTGG 330263 30 93.3 31 ............................GT CACCGAACCCGCGGTCCACGCCCAGGTCCTT 330324 30 93.3 31 ............................GG CCGCGAAGGGCCGCAAGGAATCGAACCTCGT 330385 30 96.7 31 ............................G. CGCACGGGGTGAACGCGTACGACTGGGACGC 330446 30 96.7 31 .............................T CGCCACCGACGTTGTCATGGAGGTCATCGCT 330507 30 93.3 31 .........C..................G. CGACCGCCTCGTGGCGGTCGCCCGGGAGGAG 330568 30 90.0 0 .............A.......A......T. | ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.8 31 GTCGTCCCCGCACGCGCGGGGGTGGTCCCC # Left flank : TATCCACACCGGAGATGTCTCCGTCTCCTTCGCACCGCACACCGGCGAACCCGCGCTCGCCCCGGGGCAGTGGGAGGAGATCGCCGAGATCTCCTTCCACTCACCGACCGGCGAGGTGGTGCTCCACTCCCTGACCGGCGACGGCACCGACCCGCTGCCACTGGCTGCCGGACCGGGCGACTACCGCCTCCGCGTGGCTGCCAGAGGGCGGGACACGGCCGTCGACACGACGGTCGAGACCGTCGTGGAGTGGTATCGCATCGACTGCTGGCCAGCTCCGCCGCAGCCACCCGCCCTCGTCAGGACGGGCGACCGGTACGGAGCGGACCAACGCGCGGTGCCCCGTTCCGCCACCCGGATCATCAACCACGGACCGCAAGGTCAGGCAGCCATCGAACACGACATCCTCAAACGCGCCGAACAAGACGACCACACCTGACCGCCCCGTCCCATGCACTGAAAACGTAGACTTTCATCTCAGGTCTTCCCGATCTCGACGC # Right flank : CACGCCGGGCTCGGTGACGACGACGTACTGCGTTCCGCCCCGCACACGCGGGGGCCACCCACCACACCGTCGCCCGCCCCAACCACCCCAGAACCCCAGGGCGCTCACCCTCCCGGCGGAGAGCCCCCCGCCCAAAAGTGGAACCAGGCAAGGTACGTGCCCTCCCCGAGAGCGACGCCGAACCGCCACGTCCACCGCCAGCATGGACGTCATGACGACAGCGCTCCCCACTCCCTCCGCTGTACCCTCCGCACCCCCCTGGGCACGCCGCGCCGCCCACGCCATCGCCTTGTGCGCCGTCCCCTCCGGACTGTGGCGGATCGCCATGGCCTCCGGCATCTACGTCGGGTACAGCAACCAGGTCCTGCGCGATGTCTTCGACATCCCCGGGTGGGGCATCGCGTACGTCGCGGGACTGGCCGTCATCAGCGAGTTGGCGGCCCTGTTCCCGCTACTGCTCGTCAGCGACCGGTGGAAGCCGCTGCGGCCCCGGACCCTCT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 332588-333595 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 332588 30 96.7 31 ............................G. GGGATGCGTTGGACCAACGACACGGAAGTTA 332649 30 96.7 31 ............................T. CCCGAGATATCAGGGGTTTACGGCCTCTGGG 332710 30 100.0 31 .............................. AGACCAACGACACCCTGATCTGGGCCATCGA 332771 30 100.0 31 .............................. GGACCGGGCCCAGATCGCCGCTCTTGCCGGC 332832 30 93.3 31 ............................TG CATCTTTTGGCGTGGCACCTGAAAACGGTAC 332893 30 100.0 31 .............................. CGCTGGACCGTGAGCGGATCGCGGACAACAT 332954 30 96.7 31 .............................A GCGGCTCACGGGTGTAACTCCCGGACAGGGC 333015 30 100.0 31 .............................. ACCAGTGCGTGGTGGTGGGCGGGGTGTCGCG 333076 30 93.3 31 ............................TT TGGCTACCTCGTCGTCGGCAACGGGCGCCGG 333137 30 96.7 31 ............................G. TGGCCGAGGAGAATCCGTCCGTCCGCGCGAA 333198 30 96.7 31 .............................G GGGCCGCGAACACGCCGGCCGCGAGGGATCG 333259 30 93.3 31 ............................GA CGACCTCGACCGTGACGTGGTGGACGATCGG 333320 30 93.3 31 ............................GT GGCGTGGGCCCTTCGGGTCGCGCCCCGGTAG 333381 30 96.7 31 .............................A GATTGTCCAGGTGGGCGTCCCCATGGGCGGC 333442 30 83.3 31 ............TCT.........A....A TCTTGGCGGCGTCGTAGTGCGGCGGGATCAG 333503 30 70.0 31 ..G........GTCT......A..T...GA AGTGCGTCGAGTACACCCTGGAGCGTGTGAA 333564 30 76.7 0 ..G........GAT........C.....GG | AT [333585] ========== ====== ====== ====== ============================== =============================== ================== 17 30 93.1 31 GTCGTCCCCGCACGCGCGGGGGTGGTCCCC # Left flank : ACCGGACCAGCTCCTCGTCCGGGTGCAACGGTCTCTTCGGCTGATCAGTCACTGGCCCCCCAGAAGCCGTTCAACATCACGCCCGAGCGGCACAGCCCGGACGCGAGGGGCAGTGTCCCGCATTCGCCGGACCACTGCCCAACCGACCCAACAACAGGGCTACGGCTGCGGCAGGATGTGGTGATGGCGGGCCTTCCCTGCATGCCCCGCAGAGATCCGACGGGTCCCGCGTAGCGGCGCGCCCGGACCAGGCAGGAGGACAAGGCTGGCACCCCGGAACCGTTACGGGGACGCTGACAGGCCCTGCGACATGCGGACTCGCAACCCGCCCGGCAGATTCACCCCGTAGGCTCGACCCGCCGCAGAACCCGACCAGAACGACCGCTGCCCACGCCCCTGTTGGTCCCCACCGAAGGGCCCACCCGATGCCCCCACCGAAGGCCCCGATCCCACTAAAGGAAAACGGCCCCTCAGCCGGATAGACCCGCAGGTCAGGAAGT # Right flank : GCCCTGCTGCGGTGGATGTGCGTCTGCGTCAGGGCCGGTCGGGAGGTGAGGCGTGCGAAGGCGGGGTGCCGTACGCGACATGAGGGGGGCTCTACTCGTACTGGGTGTGGTCGGCTGTGCAGGGGCTTCGGGTGTGTACGTGTTGCGCGCATACGTAGTGGGTGACGCTGGCGCCGCCGCTCATGCTTCCGTAGCCGATGACCACCGGTACCTCCGTCCAGCGTCCGCACTTGCAGCAGTGCTCACCCGAGACCGGCGGCACCCGGGGGAACAAGTCATCAAGCCTCATGCGGACACCTCCGCCCCGGCCCTAGTCACCCCGGAACCGTCGAACGTGAACGGGAGGTCCACACCGAACGTCGCCGCCGCTGCCTCCATCCGCCGCTCGTGCTGCCGCGCCCGTTCCTCCTGTTCCCCGATCCAGTCCCGCAGGTACGGCGGAACCCGGTGCCCCCACGGCGACGGGACCGACCTGGCGAGAACGTGTGCGGGGATGGGGG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 478495-478768 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 478495 29 96.6 32 .............A............... CGACTGAGGAGGACGGCGTGAACGCCGACGAG 478556 29 100.0 32 ............................. CGCACGCGGTACCGGTTCAGTTGGGCATTCAC 478617 29 96.6 32 ........................C.... ACCGCGCTCGGGATATCTGCGCCGCCCAGTGA 478678 29 100.0 33 ............................. CACCGTCCGGTGACGTCCTGGCGCACGGCGGTG 478740 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.0 32 GGACCACCCCCGCGCCTGCGGGGAACACC # Left flank : CGGCGTCCGCGTCCGGTTCCGGGACGACGTCCACCCGGGTGCCGGGCGGGAGGGCGGCCAGCGCCTCGGGGACACGGCCCGGCCACCAGACGAGCGTGGGCGGCAGCAGCCGCTCCCGCAGTTCCGTCTCGCGCCGGGCGAGGGCGTGCGCGACGGCGCCGGGGCCGTCGGCGTCCACCCCGAGCGCGGCGAGGGCCGCGCGGACCGCGCTCTCCGCCACGGTGACCGTACGGCCGGGGGACGGGGAGTACGAGGTGTCGACCGAGTACAGGGCGGCGAGCCGGGCAAGGGTCATCCGGTGCCTTTCGTTCGGATCGGGATGGATCTGGCGAGATCTCACCGAATGCGAACGAAATTACCTTGATCATGTCCGATCAGCGCGGAACGGACCCGAGCGCGCCGGGGGACCCGGTACCAGAACGCCTGATACCGGAACAGCCGGTCGGCCCCGCGGGTGCGGGGAACACAAGTGGATCAGGTCGTAGCCACCGCGCGCAGCC # Right flank : CTTCCCGACCTGGGGGTCTTTCAGGAAGTCGGGCCGTTTTCCTTCGGTCGCATCACACTCCCACACCGCTTGCGGCAACGGAACCTGGCCGAGCGACGGGGGGGGTACGGACGGGCGGGCGGCCCCGCTACGCCACCGAGGGGTCCTGGCCGTAGGCCGTCGTGGGGGTCGAGGGCTCGCTGGTGAGCGGGAGGGTTCCGGTGTAGGGGGACTCGCTGGTCAGGGGGACCGTGTCGGCGAGCGGGGGTTCGCTGGTCAGGGGCGCGGGCGCCGGGTACGGGGACAGGCCCTCGGGGGCCGCCGCACGGGCGGGACGGCGGCCGTCCCGCGTCACCCGCGCCCCGGTATCCCGGCTGTCGTCGTCGGGCGCGGGAGTCTGCCCCGGCAGCGCCGGGACGACCCGCAGCACCGGCTTGGAGCGGGCCTCGGTGGCCACGGCCGTGGGATCCGGCGTGCGCGGCCCGGACGGGCCCCCGCGGCCCGCGCGGGCTTCGGGGCGG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACCACCCCCGCGCCTGCGGGGAACACC # Alternate repeat : GGACCACCCCCGCGCCTGCGGGGACCACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 6 580927-581992 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 580927 28 100.0 33 ............................ GCGGCTCCGGCCAAGGGCAAGGACGCGTCTAAG 580988 28 100.0 34 ............................ AGTTCACGCAGGAGCCGTTCGAGGCCCCGGCCAA 581050 28 100.0 33 ............................ GGCGACGGAGGAGATCGACCACGTCCGGTGGCT 581111 28 100.0 33 ............................ TTCCCATACCTGCTGCCACGTCAGCCCGGTCCG 581172 28 100.0 33 ............................ CGGGACTGCTACGTGTACGTGGCGAACACGACG 581233 28 100.0 33 ............................ GCTGTCGACGACGTTCAAGCGAGTCGAACAGGG 581294 28 100.0 33 ............................ CAGGGCTTCCGACATGGTGCGTACGGCGGTGGA 581355 28 100.0 33 ............................ TTGGGCCGCCAGCTGAGCCGGGAGGACGGTTCC 581416 28 100.0 33 ............................ CCCTGACGATTCGGCGCGCGTGGTGCTGTGCTG 581477 28 100.0 33 ............................ CCCGCCCCTGGGGGGTGAGGGTGGCGACCCGCC 581538 28 100.0 33 ............................ CGGCCAGGATCAGAGCATGGATCTCACCGGGCT 581599 28 100.0 33 ............................ CTGGACGGCGGCGGGGCCGGCCCGCCCGGAACT 581660 28 96.4 33 ..........................T. CCCGGCGAGCTCGGCCGGGGCGGCCGCGTCGTC 581721 28 100.0 33 ............................ GGCAGGTCAGGTGGGCACCGTTCCTGCCCCGCC 581782 28 100.0 33 ............................ CTCTCCTGGTCCATGGGCGCCGGCCCTGCCGGA 581843 28 92.9 33 ....T........G.............. CTCCTCCCGGATCCGGGCCCGCGCCATCGAGGC 581904 28 92.9 33 ....T........G.............. TGCATGATCGCGGGCATCACCACTGGATGTTCC 581965 28 78.6 0 ....T................ACTCC.. | ========== ====== ====== ====== ============================ ================================== ================== 18 28 97.8 33 GTCGGCCCCGCACACGCGGGGGTGGTCC # Left flank : GGACTGCACGGGGACTCCGGCCAGCCCGGTGGACTGCTCCGAACCGGACTGCCGGGAGGAGGCGTCGACGGCCGTGGACGCCGCGGGGGTACCGGCGGAGGTACTCGCCCGCTGGGCCCGACGGGCAGCGGGCCTGGACGGCCCGAGACGGGTCTCCCGCTCCTACCGCCCCACCCGAGGCCAGAGATCGACCCCGGCACCTCGATCGACCCGCACGAGGCTGCTCTGACGCGAACCGAGGGGTACGGGGTGGGGCGCGCGGGCCTCGGGCCTCGGTGCCAGGCTGCCCGGTCCGGCCCGCCGCGCTGGAGCAGCCGGTACCAACTGATGCCCTTCGCCAGCCCGGTTGGAGCCCGGCCCTGGGCTGTACCCTTCGCGGAAGCCGACCGGACGCAGCGGTACGGGGCTCCCGTACGGGGGTACGGGAGGAGACGGTGGAGGACGCGATGCGACTAAAGGAAAACGGCCCGATCCGCTGAAAGACCCCCAGGTCAGGAAGT # Right flank : CAACCCCAGCCGAGATCGTTCGGAACTCAAGCAGAACCCAGCTCCTGGGGGCTCCAGACATCAGGCCCCCCGCCCCGCCACTCGATCATCGTGCTCGTCGCTACCTCCGCCGGGTCCAGGTCCAACCCCGCGCGCCGCAGGAACTCCGAGAGGTCGCGGAGGTTGTACGCGAGGCCGAGGATCTGGTCGCCCGCGCGTACTCGTCGCCCGCCGGTGGGGCTCGGCGGGTGGACGACGACGGGGACGGCCATGTCTCCAGCCTCCGCCGCGCCCACGTCCACCGCACCCCGGGGACCACCGACCCGACACCGAACGTCACCGGCCGGGACAGGCACGACACCAGGTCCCCGCACCGCGCCCCGATACGCAGCACCACCCGATTCACGCGGACGGCCACAGCGCGTAACGGCGCCCCACCCTGCGGCGGCTCACACGGGAACCGTGCCCCTCGCCCCAGAACGCGACGCACGCCGGACCCCACCACCCCCAACCCCGCACGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 585742-586196 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 585742 28 100.0 33 ............................ CTGTGCGGCTGCGTCCGGACGGAGCGGCGGATG 585803 28 100.0 33 ............................ CCGCCGGCCATCGGCTTCGGGAGCGGGTGGTCC 585864 28 100.0 33 ............................ GCGGGTTGACGGGATGCTACGGCCGGGGGCAGC 585925 28 100.0 33 ............................ CTACAACAACACGGCGAACGCGTCCAGCGGCCT 585986 28 100.0 33 ............................ TGTCACCAAGGGCATGGCGGGCATGCTTGAGGC 586047 28 100.0 33 ............................ CTGACTCCGCCGGAGCATCGGACGCATCCCCTG 586108 28 92.9 33 ...G..........C............. GTGCTCACCGCCGGGGGAGCGCCAGACATCGGA 586169 28 85.7 0 ...G.........CC..........C.. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 33 GTGTTCCCCGCACGTGCGGGGGTGGTCC # Left flank : GGTGGACGCTCTGCGCCGTCAGGTCACCGGGCATCTGAAGCACCCCGGGTTCGCACTCGCCGTCGCCCACTCGGGCGGCACGGCGGTCAGGTTCGGGTACGCCTTCCTCCGCTCGGCCGACTACTGGTTCGGACCGGAACTGGTGGACCGGGTCCCCGAAGGTGCCCGTACCGAACAGCTCATGGGGCTGTGCGAACTCGCGGTCCAGCCGGACTGGCAAGGCCACGGCATCGGCTCCCTGCCGCACGCCGACCTGATCACGTCCACCGCCCTGCTCCCCACGCTCTCCGGAGCAAGGCCCGAACTCGGCGCGCCCACTGCGCCGTACAGCGGACGGGACCAGGCCGGGTGCCGGTTGCACCGGTTGTACCCTTCCCGGGACGGATCAGGTGTACGGGTACAGGTGCCTTGCACGGAGGACCGCCAAAGGCGAACGCAGGGGTGCGATGCGACTAAAGAAAAACGGCCCGATCCGCTGAGAAACCCGCAGGTCAGGAAGT # Right flank : CTCTGCTGGATCATCGTGCTCGTGGCGACCCCCGCAGGGTCGAGGTCCAACCCCGCTCGACGCAAGTACTCCTAGGTCGCGGAGGCTGTAGGCGAGGCCGAGGATCTAATCGCCCGCGCGTACCCGTCGCGCGCCCATGGGACTGGGCGGATGGACGACGACGGGGACACTCATGTTTCCCGCGTCGGCCGGAGCAGCACCCACCGCACCGGGAGGACCACCGGCCGGACACCGATCGTGAGCGGCGGCCAGGACGGACCCAGCACCCCGTACCTGCGAACCGGGGCCACCGCACCCTCGCACCAGGCAGACCGTGACCGCACGGAACGCAAGGAACCCGGGCCCCTCGCCCGATCACCCTCGGCCCGACCGCCCCGTCCCCGCACCCAGCGCCGACCCGGGCCCCGAAGCGAGACCAGCACCCCCGCACGTACACGGACAGCGACGCGCGAACCATCGCAACCGCAGCTGCCGACGACGACCCAGCTTCAACCGTGTCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGTGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 590941-591702 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 590941 30 96.7 31 .............................T CCTTCCGGAGGTCCACCCCGAACTGCTTCCA 591002 30 96.7 31 .............................C CCTGGCAGCAGTGGCCGATGACGGCCGGTGG 591063 30 100.0 31 .............................. ATCACGAAGACGGAACGGGATGTACGTTCGT 591124 30 96.7 31 .............................C TGGACAAGCGCGTCGACACCCGCGTGCGCGG 591185 30 100.0 31 .............................. TCCACGTGATCTCTCCAAGGTGATCGTGGAT 591246 30 93.3 31 ............................GT ACACGTCCGCCGAGTGCGCCCGGATCTACGG 591307 30 93.3 31 ............................GC CGATGGCGACGCTCAAGAGCATCGACATCAT 591368 30 96.7 31 ............................T. TGAGTGGCTGGGGGCCGCTGTTGCCGGACAC 591429 30 96.7 31 .............................T TCTGGGAGCGAGGGCGACGCACGTCCATCTA 591490 30 96.7 31 .............................A TGATCTCGCAGCCCGGGGCGGTAGGGGTGTG 591551 30 100.0 31 .............................. GCGACTGCGGTCACCACGCCGACGGCATCAC 591612 29 86.7 32 .............A.......A.-.....A GTCCGCCAGTGGCTCAACAACCTCCGCAAACC 591673 30 70.0 0 ..G..........C.A.A...ACA.C...A | ========== ====== ====== ====== ============================== ================================ ================== 13 30 94.1 31 GTAGTCCCCGCACGCGCGGGGGTGGTCCCG # Left flank : TGGGGCTGTCCGGCAAGAACTCCCAGTACTTCAGCCGCGCGACGGCCGGAGTGCCCGGCTCGGTCACCCAGAACGAGGAGTTCGGCAAAGTGGTGCGGCTCCGGGACGTCAACGGCGACAGTCGCGCCGATCTGCATGTCACCGCCAACCAGGGCTCCTTGCGCCTGCTCGGCAGCCGCACGGGCGTCACGACCTCCGGCATCAGGGGGATCGCCACGTACGAGGTCACCGGCATCCTCCACTGACCGGGCCCCGCACCGACCCGTACCTGTGGCTCCACCCCGCCCCGCTCGCTCCCTGGGCGGGGCCTAACTCGTTGCGCCCACTACGACTCGCAACGGACGGGACCAGGTCGAGGGCCGGTTGTACCCTTCCCCCGGGACGGATCGGGTGTTCGGGTACGTGCCTTGTACGGAGGGGGTGCCAAGGGCGAACGCGGGGGTGCGATGCGACTAAAGGAAAACGGGCCGATCCGCTGAGAAACCCGCAGGTCAGGAAGT # Right flank : AGGCGCACCGCCCCGCGAACGTTCACCATGGGGTGGGGAGCCGTGGGGAGCCGCACCCACAACGCCCCACCCCCCAACCCCCGCCCCCTACAAATGCGTAGGCGCGAACATCCTCAGTACCGCCGGGAGGACCACCACCGAAGGGCCGCTCTCCGCGAACGACTTCGTCAAGGTGGCGCCCAGGGTGTCCGGGGTCGCCAGGGTCGCGGGGACTCCGAAGGACTCCGCGAGGGCGACGAAGTCCGGGCGGGACAGTTCCGTGCCCGTGGCCTCGCCGAACGTGTCGGTCATGTACTCGCGGAGGATGCCGTAGCCGCCGTCGTCCACGATCAGCCACGTGACGTTCAGGTCGTACTGGCGGGCCGTCGCCAGCTCGGCGATCGAGTACATCGCGCCGCCGTCGCCGGACACCGCGAGGACCGGGCGGGACGGGTCCGCCGCCGCCGCGCCCAGCGCGGCGGGGAAACCGTAACCGAGGCCCCCGGCCCCCTGCGCGGAGT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCACGCGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 651252-651560 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================== ================== 651252 23 100.0 49 ....................... GTTACCTGTGCTGGGCGTACTTCGTTCCTGTGCCGTCGCTCGGTGCGTT 651324 23 100.0 50 ....................... ATGCTGCCCTCTTACGGTCGCTCTTCGGGTGCGGGGCCGCCCTCGTCTTT 651397 23 100.0 46 ....................... GGTTCCCCACCTGGACGCACCTGTTCCCGTGCGGGCCGTTCGTGGG 651466 23 100.0 49 ....................... ATGCTGCCCCCTGCGGTCGCTCTTCGGGTGCGGGTCTGCTCTCGTCTTT 651538 23 91.3 0 .....................TT | ========== ====== ====== ====== ======================= ================================================== ================== 5 23 98.3 49 TGCGCAGTTCCCCGCGCCCCTGG # Left flank : GCGAGCGGGCGCTGGCGCGGGCGCGGGACCTCTTCGACCGGGGGGTGACGGACGCGGACCCCGAGTGGATGTCCTTCTACGGGGAGGCGGAGCTGGCGGGGCTGGAGGCGCAGTGCTGGTCCGCGCTCGGGGAGTGGGCGCGGGCCGCGCGGTTCGCGCGGCGGGCGGCGGAGCTCCAGGAACCGCACTTCGTGCGGAACACCGCGCTGTACACCGCCGAGCTGGCGGACGATCTCGCGCGGGCGGGGCGGCCGGACGAGGCGGCGGCGGCCGGGGAGCGGGTCGTGTCGCTGCTGGACGAGGTGCAGTCCTCGCGGGTGCGGTCGATGCTGGCGGAGACGGTACGGGTGCTGTTGCCTCACCGGCGGGCGGGGGGTGTGGGCGGTTTCCTCGACCGCTATGCGGCGCTGCCCCGCCCGGCGTAACGCCTTCCGCCTTCGCTTGCGCCTTCGAGGTCCGTCCGGCTGGACGCACCTGTCCCTGTGCGGGTCGTTCGTGGG # Right flank : TGGGGGCGCCCCATCATGTTGTCCGTCGTCTGCGGAACCACCCTCCTCGCGGACTCGCGCTGCTGCGGGAGGGGGTGGGCGGGAATCTCTGCTCGCAGACTCCGATGCTCTTCAGTGGAGCAACTGGACGTCGTGCCGAGCGTGTCGGATCGAGGACGGAGAATCCCGACCGGCCCCGACCCGAAGAACTGACCGGACGCGCCCCAAAGGGGCGCGGGGAACTGCGCGAAGACGAGAACCGGCCCGCACCCGAAGAGCGACCGCAGGAGGCAGCGTCCAGGGGCGCGGGGAACTGCGCACCCCACGAACGACGGCACAGGAACGAAGTACGCACACCCGGACAGACCTCGGAAGCGCACAGCGAAGGCGCCCCGTGAGGTTGACGGGAGGCAACCCCCCAGGGGAACAGTGGCGTCTTGCGGAAACGGGGGCGCCCGCCTTCACGGCGTTCACATACACCGTAAAGTGGGCGCGCGGCCACGGCTGCCGCACGGAGTGAG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.13, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCGCAGTTCCCCGCGCCCCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 10 840982-840743 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFBV01000010.1 Streptomyces uncialis strain DCA2648 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 840981 24 100.0 45 ........................ TCGTGCACCTGGACGTGCTTGTTCCTGTGCGGGCCGTTCGTGGGT 840912 24 100.0 48 ........................ ACTCGGTGCTGGGCGCACTTGTTGCCTGTGCTGTCGCTCGGTGGTTTC 840840 24 91.7 48 ....A.....C............. GGGTGCCTCTCGCGGTCGCTCTTCGGGTGCGGGGCGGTTCTCGTTTTC 840768 24 91.7 0 ..........C............G | TT [840746] ========== ====== ====== ====== ======================== ================================================ ================== 4 24 95.8 47 GCGCGGTTCCTCGCGCCCCTGGGT # Left flank : CTCGCGGACCGGCTGCGGATCACCCAGCTGATGGACCGGATCATCGAGCTGCCGCGGGCGGACCGCTGGCAGTCGATGGCCCGCGCGTCCATCCGTGAGGACCTGTACGCGGCGCACGCGGCGCTGACGGCGGACGTCCTCGCGGTGGGTGACGGCGAGTCGTCGCCGGAGCAGCGGTTCAAGGCGTGGGAGGAGAAGAACGCGGCGATCCTCGGGCGGGCCCGGTCGACGCTGGAGGAGATCCAGGTGTCGGAGGACTTCGACCTGGCGAATCTGTCGGTGGCGATGCGGACCATGCGGACGCTGCTGCGTACGCATACCTGAGCGGTGGTACGTGGGCGGGCCGTTTCGGTCCGCCCACGAAGTGCGCAGGGGCGCCCCGTACCTGATGAGGTACGGGGCGCCTCCCTTTTTGCGCGGTTCCGCGGGGCGCCTTCGCTTGGGCTTTCGAGGTCTGTCCGGGTGGGCGTGCTTGTTCCCTGTGCCGTCGCTCGGTGGGT # Right flank : GGCCTCCTGCTGTGGGTGTTCGGGTGCGGGGGTCCACCGACAGGGTGTATCGGGTAATACGGGCAATAGGTGACATTCCGTCTATGGTGGACCCGATTGTCACACCGAGGGGTGCCGCTTCGTGACCGTGAATGTCTCCGCCCGCCCACAGCGACCACCGTCCGCGCCCGCGCCCGCGTTCCCGCCCGCCCCGGCCCGGCTGCGCGGGCTGGCGCTGGAGATCGTGAAGTTCGGGATCGTCGGCGGCACCGGCGTCGCGGTCAACTTCGCCGTCTTCAACGTGCTGCTGCACGCGCTGGGCACCGGCCCCATGACCGCGACGGTCCTCGCCAGCTCGCTCGCCATGGCGGGCAACTACCTCGGCTTCCGCTTCTACGCCTACCGCGACCGGGCCTCGCGCACCCAGCGCCAGATCATGCTGTTCTTCGTCTTCAGCGGACTCGGTGTCCTCATGGAGAGCGTGCTGTTCTACGCCGCGTACCACGGCGCGGGACTGACCG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCGGTTCCTCGCGCCCCTGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //