Array 1 101-428 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZG01000151.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 101 28 100.0 32 ............................ AGTAGGTCGCGTTCGGCGGCGAGGCGTTGAGC 161 28 100.0 32 ............................ AAGCTGGCGCCGATGACGGCTACTGCCGCCAC 221 28 100.0 32 ............................ ACCGTCATGCTCTGGCGCATCGATGCCGGCGA 281 28 100.0 32 ............................ TTGTCTTCGGATGCGAAGTGGGCATTCGTCAC 341 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 401 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACACACAG # Right flank : AGCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 380-112 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZG01000286.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 379 28 100.0 32 ............................ TGCAGCGATGATCCGTTGTTCGCCTTCGAGAA 319 28 100.0 32 ............................ TTGAGAGCGGTTTGCTCGGCGGCGGTCGCCTC 259 28 100.0 32 ............................ TGCAGAACCTTCGCGGCAACCAACTGAGGTCC 199 28 100.0 32 ............................ TGGTTGAGCCAACATGCTCCCGTGCTGTACGC 139 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCCCGCACAACGCCACGCTGTACCTTGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGTGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTTCCGCCCATCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGGCGGCTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : ATACACCGTGCGCATGTGACCTGCCCCCCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCGAGCAGGAGACGGCAGTGAAAAAGCGTTTTACCGAAGAGCAGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8289-9538 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZG01000269.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8289 29 100.0 32 ............................. CACAAGGGCACCATCGGCGCCATTGACCGCGC 8350 29 100.0 32 ............................. GATCGGAACCCTTTGAACAATGCTCCAGAGAA 8411 29 100.0 32 ............................. GCAGAAAGCTCTGGCGTTCCGTAGTCAGCCAA 8472 29 100.0 32 ............................. CTGCATCGCACCACCACCGAAGTCCCTAAGCA 8533 29 100.0 32 ............................. GTACAGCAGATGAACCAAGACCAGGCGGAAAT 8594 29 100.0 32 ............................. CGGAGGACTGCGGCATGAAGACTTCTGAACGC 8655 29 100.0 32 ............................. GCTTCCTTGTTCCTGCTCACTGCTACGCGCCG 8716 29 100.0 32 ............................. CGGAACAACAGTGCCGCGACGGCGAGATCGTA 8777 29 100.0 32 ............................. ATCGATAGAGAACAGGTGAACTACATGCGGTA 8838 29 100.0 32 ............................. GTGGATGACGAAGGCGCGAACGTCACCGAGTT 8899 29 100.0 32 ............................. TCAGGATCCGCAGGATCAACGTCCAGCAGCGA 8960 29 100.0 33 ............................. CTCGTTCTCCGCGTCGTGAGGTAGCCAGCAGTC 9022 29 100.0 32 ............................. AGGGTGCAGGAGCCGCAGCAAGGGCACAATTC 9083 29 100.0 32 ............................. CAGGGCCACCAGCCGGTCCTGGTGCTGACGGT 9144 29 100.0 32 ............................. ACCCTGGTGGTGTAGCGGTCCACCAGGGCATG 9205 29 100.0 32 ............................. GTCACGGTCGCGCAGATCATGGATGACGTGCT 9266 29 100.0 32 ............................. CGCTACTGGTCCCTTCTGCGCGAGCTGGCCGC 9327 29 100.0 32 ............................. TAGTTGCGGAAGCCAGGCCAGGACAGGCCGAG 9388 29 96.6 32 ..............A.............. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 9449 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 9510 28 79.3 0 A..........A..C..-.....A....T | C [9514] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGACCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGACCCACCGCGCGGTATTTTCCACGGTGGGGCGAACCGCGCGGCACTTCGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGTCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGCGCGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAACAGATTGTGAACGGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCAGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCGTATCCCTTGCAGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18712-19780 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZG01000269.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18712 29 100.0 32 ............................. CATCTTCTCTTCGGCCTTGAAGCGCCGCATGA 18773 29 100.0 32 ............................. CAGTGCCGCCATCACCTGCTCGGGCACCTTGT 18834 29 100.0 32 ............................. GCTCCGGCCTGTGGGGGCGTGTCGAATACACC 18895 29 100.0 32 ............................. TAGGACAGGACTGCGTTGGCGTTGTCGAACTC 18956 29 100.0 32 ............................. TTCAGGGCGCGGCTGGAGGTGGCGTCACTGCA 19017 29 100.0 33 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCAC 19079 29 100.0 32 ............................. TCGGAATACGACTGGTCTTCGCTGCCAGGAAA 19140 29 100.0 32 ............................. AGTTCAGTTTCTCGCCGAACATCAGTCTCACC 19201 29 100.0 32 ............................. TCGGAATACGACTGGTCTTCGCTGCCAGGAAA 19262 29 100.0 32 ............................. GAGGCGTCATGAGCCAGATCAGTAAGACCCAT 19323 29 100.0 32 ............................. ACGTTCCCCAGTGGATAATCCGAGTCATAGAA 19384 29 100.0 32 ............................. TAGGTGCGAAGCAGGCGCTGTACCGTGTGATC 19445 29 100.0 32 ............................. ACCCTGCCGGATAGCTATACCTCAGCAGAGGT 19506 29 100.0 32 ............................. TTCTCGCCGGCCTGCTCTCCCAGACCGCCCTC 19567 29 100.0 32 ............................. AAGCCGGTATTCGTTTCCCAGGTCAACCTGGA 19628 29 100.0 33 ............................. CGGCCGCCACCGACTTGGGCAGGCTTTTCCAGC 19690 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCTG C [19695] 19752 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28347-27599 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZG01000292.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28346 28 100.0 32 ............................ TGGCCCAGTCGGTGAAATCACTTCCAGGACCT 28286 28 100.0 32 ............................ TCGGTTTCGCGGAAGTCGGCATCGATCCCGTG 28226 28 100.0 32 ............................ TTTGGCGCGTCGGCCTGGCCCACACGATCGAT 28166 28 100.0 32 ............................ CAGAGCGCGGCGGCGAAGAGGAAGCGCGCCGG 28106 28 100.0 32 ............................ TTCCAAGTCAGATGTTGCGGGTTCAAGTCCCG 28046 28 100.0 32 ............................ AGGAGCAAAACGGTCAGCGAACAGGCAGACCA 27986 28 100.0 32 ............................ ACTGGGAAGCTGAATCCAGGGCGCTCCAGAAA 27926 28 100.0 32 ............................ TCGAACACCTCTTTACCGTGCGTGGCCATGGT 27866 28 100.0 32 ............................ AATACAGAGCAGAATTTCGGTCCACTGCTCAC 27806 28 100.0 32 ............................ AGAACCGAATAGCCATGAGGCTGGCCAGAGGA 27746 28 100.0 32 ............................ ATTCCAGGCGGACCCAGACTTCATCCGGTTGC 27686 28 96.4 32 ...........C................ GAGTGTTACGGCGAGCGCCGCACTTTCACCAG 27626 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GTTGGCGAACTCGCCAGCAGCAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAACTGGGGACAGGTCACATCGGCCACCGCTTCACCA # Right flank : TCGCGAGCGATAGCGATATAGCGCCATAGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTCACCTGTCCCTTGGGGTAATGGTAATGCCCGTCAGTCAAGAAAAAACGGCGTGTCCCCAAGCAAGGGACGCGCCGTTTTTCCGGGGCCTTTTGTGCTGGCCTACAGCCCGTTCTTCGCCTTGAACTCGCGGCGGCGGCGATGCAGGACCGGCTCGGTATAGCCGTTCGGCTGCCGGGTGCCTTCCACCACCAGCTCCAGGGCGGCCTGGAACGCGACGTTGTCGTCGAAGTTCGGCGCCATCGGCCGGTAGGATGGGTCACTGGCGTTCTGCCGGTCGACCACCACGGCCATACGCTTGAGGCTCTCGACCACCTGCTCCTGGCTGATCACGCCGTGACGCAGCCAGTTGGCCAGCAGTTGGCTGGAGATGCGCAGGGTGGCACGGTCTTCCATCAGGCCGACGTCGTTGATGTCCGGCACCTTGGAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29289-28660 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZG01000317.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29288 28 100.0 32 ............................ GAACTCATCAAGTAACCCAGCCGGGCGCCACT 29228 28 100.0 32 ............................ AGACCGTGACCAGCGCCAAGCGGTCCTTGGTG 29168 28 100.0 32 ............................ CTGGTTTCGGACGTTCCCAACTGCTGGGTCGA 29108 28 100.0 32 ............................ TGCAGGAGGAAGGGCGCTTGCGCGCCGATTCA 29048 28 100.0 32 ............................ AGTCACATGTTCGGGTACCAGCAAGAGCTGTT 28988 28 100.0 32 ............................ TGATGCAGATGCATGAGCGCTTCCAAGAACGC 28928 28 100.0 32 ............................ TCTTGAGCAGGAGCATTGCGGTTGGAAGAAGT 28868 28 100.0 32 ............................ TCCGGCCCCACTCGGTCCGGACTGTGCAGCGC 28808 28 100.0 32 ............................ ATCCGGCCCGCTCACCGACGGCGGCGCGTCCT 28748 28 96.4 32 ............G............... ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 28688 28 82.1 0 ......................G.CTTC | C [28663] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGTCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTATATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGTGAGGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATACCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGTCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 245-692 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZG01000084.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 245 28 100.0 32 ............................ CGGGACGAGCCCAGAACCACATTCGGGCACAT 305 28 100.0 32 ............................ AGGGCGGCGCCCTGGCGGAGTGCTGCTACGCA 365 28 100.0 32 ............................ TTGTTGGCAGAACGTACCGCCATGATCGCCCG 425 28 100.0 32 ............................ CTGGAACAAGGCGAGTTGTTCCAGGGAGGATT 485 28 100.0 32 ............................ TTGGCGAGTTCGCAGCGCTGTTCGTTGTGCTG 545 28 100.0 32 ............................ TACGGCTTCGCGCCGCCGGTCGGCAAGGGTGA 605 28 100.0 32 ............................ TCGGGCGACGTGCCCGAATCCGGGCTCGATGT 665 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAACTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : GTTGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTGTCTCTCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //