Array 1 1044-415 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWQX01000040.1 Streptobacillus moniliformis strain NCTC 11194 contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1043 36 100.0 30 .................................... CAGGATGTTTACCTGTGTTTGGGTCTATCC 977 36 100.0 30 .................................... ACATAATATAAAAATAAAATATTAAATAAA 911 36 100.0 30 .................................... TACCTTACAGACTTTTATGGAAAGAATGGG 845 36 100.0 30 .................................... ATCCGAATTTGTTAGAAAAAATAGATTTTG 779 36 100.0 29 .................................... TCCTAAATGTACTTTAATCCAGTATTTAG 714 36 100.0 30 .................................... TAACTCAATCGCAAGGGATTGGTAAAAGAT 648 36 100.0 30 .................................... TTGCATTCTATTAGTTCGTGTTCTAGTCGT 582 36 100.0 30 .................................... ATATAGTGGTGTATTAGTAATATAAAACCG 516 36 100.0 30 .................................... TTTCTTTATATTTTGTAGGCTCTTTTTGAT 450 36 75.0 0 ....T........AC.......A...G..T.TTG.. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Left flank : GATTTTGATTGCATTCGTAATTACTCAGATACAGATTCTTGGTAAATTTGAATAATGTGAATGATTTAGACATTCAAAAAGAACGGGATTTATGATACAGATTCTTGGTAAATTTGAATAATGTGAATGCATAGTAATCATCATAAACAGTATCAACTCGATACAGATTCTTGGTAAATTTGAATAATGTGAATGTAGAGTATATAGCAACATATGAAGAAGTTAGATACAGATTCTTGGTAAATTTGAATAATGTGAATGAACAATTAAAAATGTAAATGGTTATATCAGATACAGATTCTTGGTAAATTTGAATAATGTGAATGTTCAACAATGTGAAGACAATAACGAATTGGATACAGATTCTTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAATAATGTGAATGTGGTAACTCAAATGGCGCTTAACGGAACGT # Right flank : GTTGACTTTTTTAAATATTATGCTATAATAATTGTGTAGATAAGATTCACATTATTCAAGTTTACTACAGATTCTGTATTAAGATACAAAATCGTAAGACTGGCTGCCTTAAGCAGCTTTTTTTATTCTATAGGAAATTAAAAAAATATCCAAGATAAAAAAATAAAAGAAAATAGTAAAAAAATATTGATAAAGAAAAGAAAAATTAATAGAATAAAAAATAAGAGAACAACAAAACTACCTATCATAAAAATAGGCATAATATATTAATTATAGAACTTATGAATAGGAGGAGAAAGACCATTATCAATAAATAGTTCATAACGTTTAAGATAAATATTACAATGAGGACACATAAAAGGGTCAAAGTCCCAAAGTTCTTTAAAGTTTTTCCTAAATAAAGAAAGAGACTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 3496-1218 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWQX01000040.1 Streptobacillus moniliformis strain NCTC 11194 contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3495 36 100.0 30 .................................... AATGATGTCTTCATTTGGAAAATCTAAAGT 3429 36 100.0 30 .................................... AAAAAGAGCTAAATTCTGAATTAAACGTTT 3363 36 100.0 30 .................................... AATTTTGATTATTTTAATACAGCCAGAACA 3297 36 100.0 30 .................................... TTGGAGAAATAGATTGGAAATAACGGAGGG 3231 36 100.0 30 .................................... ACGTTCCAATTTATACGTACGAATTAAATT 3165 36 100.0 30 .................................... GTTTAAAAATGAATCAAATAATTCAAGGTT 3099 36 100.0 30 .................................... GAAAATACACTTCAAGAATAATTGATTGGA 3033 36 100.0 30 .................................... ACTGTTATAAAGCTTTCGTTCAGTTGAACG 2967 36 100.0 30 .................................... GCAAACATCAAAGTGGAAATGCGATTGACA 2901 36 100.0 30 .................................... ACTAATCAACTTATAGGAGCTTTTGAAAAG 2835 36 100.0 30 .................................... TTAATAATATGAGAACTAAACCTAGATATA 2769 36 100.0 30 .................................... GGCGAAACGTTTAATACCGCATCTCCGTAG 2703 36 100.0 30 .................................... ATTATTTTAGTAAACTTAAAAAATATGAGT 2637 36 100.0 30 .................................... GGGAGTAGGGGATATTTTTGGACAAGCTTG 2571 36 100.0 30 .................................... TTTCTATTTTTAAAGATTTAAATAAAGAAG 2505 36 100.0 30 .................................... AAGAAGAAGTTGTAGATTAAGCTGACACAT 2439 36 100.0 29 .................................... ATTTTAAAGAAAATAGGAGAAGAAAAAGA 2374 36 100.0 30 .................................... TGAAATTAACTTTAACAATTTTAAGTACGT 2308 36 100.0 30 .................................... AAATTAAAGAACTTGTTTTAGACGAGAGCG 2242 36 100.0 30 .................................... CGTTTGGATCGCTTATCAATGGTAACGGTA 2176 36 100.0 30 .................................... ATACTATATAAAAATTGTAAAAAAATTAGA 2110 36 100.0 30 .................................... CACACAAGGTTTTAGAACCGTAGCAGAACA 2044 36 100.0 30 .................................... AAAAGATTAAAAGAGAATGAAGACTGTCAC 1978 36 100.0 30 .................................... TTAATACTGCAATCAAAAATCCTGATCTTT 1912 36 100.0 30 .................................... TTAAAAGGGAATACAATTATTATAAAACGG 1846 36 100.0 30 .................................... TTTTTTTTTATGTAGTTATTTATATAGTTT 1780 36 100.0 30 .................................... GAATTTGCGGTTAACAGAAGCACAGACCCA 1714 36 100.0 30 .................................... AAAAAGGGTGAAAGAATACTTGTGCAAGGG 1648 36 100.0 30 .................................... TTTTAAAGATGTTTATCACATAGAAATAGA 1582 36 100.0 30 .................................... ATGGATTTTGATTGCATTCGTAATTACTCA 1516 36 100.0 30 .................................... ATTTAGACATTCAAAAAGAACGGGATTTAT 1450 36 100.0 30 .................................... CATAGTAATCATCATAAACAGTATCAACTC 1384 36 100.0 30 .................................... TAGAGTATATAGCAACATATGAAGAAGTTA 1318 36 100.0 29 .................................... AACAATTAAAAATGTAAATGGTTATATCA 1253 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 100.0 30 GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Left flank : AAAAGTTATCTAAACTTTTTAGAAGAAGGTAATGAAATGCTGGCTATACCTGAAATAATAAAAATAGATTTTTATGACCTTTTTAAAGAGTTATAGAGAAATGAGATTACTTGTTTACTTTGATTTGCCAGTATCAACTAAATTAGAAAGAAAACAAGCTCAGGATTTTAGAAAAAATTTGTTATCTGAAGGATTTATTATGATGCAATTTTCTTGCTATTCAAGATTTTGCAGAAATGATGCTGAATCTTCAAAATATTTTAATAGAGTAAAAAAATTGAGTAATAAATTAAGTGGTGGAGAAGTAAGAATTTTAAAAATTACTAACAAACAATATGAAAATATGTTAATATTAGTAAAAGAACCTAAATTATCTGAAATAAAGCTTTCAAAAAATCCATTGGTTATTTTTTAGTGTGAATTTTGTGCTAATGGATTGATTATTTAAATTTCAAACTGTATTTTCTAGCAATAAAATTATATTAATTTCATTGCTAGAG # Right flank : TTCAACAATGTGAAGACAATAACGAATTGGATACAGATTCTTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAATAATGTGAATGTGGTAACTCAAATGGCGCTTAACGGAACGTGATACAGATTCTTGGTAAATTTGAATAATGTGAATGCAGGATGTTTACCTGTGTTTGGGTCTATCCGATACAGATTCTTGGTAAATTTGAATAATGTGAATGACATAATATAAAAATAAAATATTAAATAAAGATACAGATTCTTGGTAAATTTGAATAATGTGAATGTACCTTACAGACTTTTATGGAAAGAATGGGGATACAGATTCTTGGTAAATTTGAATAATGTGAATGATCCGAATTTGTTAGAAAAAATAGATTTTGGATACAGATTCTTGGTAAATTTGAATAATGTGAATGTCCTAAATGTACTTTAATCCAGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //