Array 1 1369375-1370889 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEXT01000001.1 Desulfonema ishimotonii strain Tokyo 01 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 1369375 35 100.0 31 ................................... CGCCAATATAACAATACAGGTATTATAGTTG 1369441 35 100.0 31 ................................... ATTGTAAACTGCATATCTGTGTTTGCCGTCT 1369507 35 100.0 35 ................................... TCACGTGAGTCAGTCTTAGTTCTATACTTCTTTAG 1369577 35 100.0 32 ................................... AGGAACTTGAACAACATCGTTACTAACGAGCT 1369644 35 100.0 31 ................................... CTCTAGATAATTCGATTTGGTCCGGTTTGGG 1369710 35 100.0 33 ................................... AATTCTATCGCTTACGGACCTACAAATGCAACT 1369778 35 100.0 32 ................................... TTTGTATCTATCATATCGCTCGGAAGACTAAA 1369845 35 100.0 31 ................................... GAGAGATGGTGTTTGTCTGGTAGAGCATCAA 1369911 35 100.0 33 ................................... ACATCAAGACTCAGTATCACAAAATGTTCTAAA 1369979 35 100.0 34 ................................... ACATTATGATCAATGGTGCTTTCACGAATTTTTC 1370048 35 100.0 32 ................................... TCAGCTCGTCTACTTGTGGGATGCCTTGACTG 1370115 35 100.0 34 ................................... TTTCTTGATCAAAAATACCTTTATAGAGTATCCT 1370184 35 100.0 33 ................................... TTACGACTACTTTCTTCTCTTATCTGTTTATTT 1370252 35 100.0 31 ................................... ACCAGATGGCGGGTTTACGTCAAACGGGTTA 1370318 35 100.0 34 ................................... GAGACCAATTATTCGCGCAGTTGCACACATCAGT 1370387 35 100.0 32 ................................... CAAACACGTTCTTCATAATGAACCAATAATGT 1370454 35 100.0 31 ................................... ATTTTGCGCTCTCCTTCTGTTATTCGGGTTA 1370520 35 100.0 33 ................................... TATTTCTCGTATCTTTCAGGATCTCCGGCAGAA 1370588 35 100.0 33 ................................... CGTAGCGGACAGCGATGTTTTCTCCGACTGCCT 1370656 35 100.0 31 ................................... TTTTATCTTTTTCTTATCAAAAAAGCTCTTC 1370722 35 100.0 32 ................................... TCGTTTGATTTTCGCAGTCTGCCTCATAATAC 1370789 35 100.0 31 ................................... CACTGTTTTCGAGACGTAAAATTATTTTTGA 1370855 35 91.4 0 ................................TTG | ========== ====== ====== ====== =================================== =================================== ================== 23 35 99.6 32 GGTTGGAAAGCCGGTTTTCTTTGATGTCACGGAAC # Left flank : GGACCGGGTGGTGCTGAGTATGCTGGGCCGGGGCCGGAAAGTGGCGCTTGACGGGAAGGGGCGGATTTCGTCTGCGGACCGGCGGTTTCTGATTGAGCAACTGGAAAAGCGATGGAAAAAGGACGGGCTGAATAAGCTGTTGGACTGCCAGTTAAAGGGGCTTCGCCGGGTTACGGAGCATGGGGAGGCGTATTCGCCGCTATTTTTCCGGTCGAACGGGTCTGTGTGCAGGCCGAATGAATAACAGGTTGACTCGGAGCGGAGATGGGCGTAATGTCAGTGAGAATTTCGTTTCGGGTCGTTTTCGGCCCTGTTCTTTTAAAAAATCCTTTTTATACAGCATGATACACGCATGAATGGCGCGTTTTCCCATGCTGCCCACCCCGAGGATTTTTCATTTTTTAAGACTACCGGCTTTCCGGCTTATGGTTTTGAATTGTTTGACTAAACCGGCTTTTCCGTTTTTTACCCGAAATCGGTATTTCCAATGAAATCACTCA # Right flank : GCCACCCCCGGCCCAACCCGCTTCAGCGGGTTTTGATGACTGAGCCGGGGAATTCATTCCCCGGCGGCGGGGATGTCGCTCCGTGTCGTACCGATCCGTCCGAAGCCCGGCCTGTCGCCTGGGACCGAAGCCCGGCCTGTCGCCTGGGAATAAATTCCCAGGCTGAACCCGCAAAACAGGCTGAAGCCTGTTGATGCCCCCGGTCCAACCCGCTTCAGCGGGTTTCAATAATTCAGCCGGGGAATTCATTCCCCGGCGGCGGGGATGTCGCTCCGTGTCGCTCTGATCCGTCCGAAGCCCGGCCTGTCGCCTGGGAATAAATTCCCAGGCTGAAACCGCAAAACAGGCTGAAGCCTGTTGCCACCCCCGGCCCAACCCGCTTCAGCGGGTTTTGATAATTCAGCCGGGGAATTCATTCCCCGGCGGCGGGGATGTCGCTCCGTGTCGCTCTGATCCGTCCGAAGCCCGGCCTGTCGCCTGGGAATAAATTCCCAGGCTGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGGAAAGCCGGTTTTCTTTGATGTCACGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 2051657-2060192 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEXT01000001.1 Desulfonema ishimotonii strain Tokyo 01 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2051657 37 100.0 36 ..................................... TCACCTGGGTGAGATTGTGCATCCGCCCAAAGGTCA 2051730 37 100.0 38 ..................................... AATGGGGATTGCTGCTGATATGGCAGGCGCTGTAAAAG 2051805 37 100.0 36 ..................................... CGATAGACGCTGCTGTGTCTGTTTTGGCTAATTTTG 2051878 37 100.0 35 ..................................... ATAAACAGACTTTGCCCTACCCCGCTCCCTTTTGA 2051950 37 100.0 37 ..................................... CAATTAAAGCCGCCCCGCCTAACGCAACAACTTTTGG 2052024 37 100.0 35 ..................................... GGATTCTTAAGGCGCGTAATCCGAGTGTTCAACAT 2052096 37 100.0 36 ..................................... AGGAGGTTGGATGTTCGAAAACTCGCTGTATTGCAT 2052169 37 100.0 38 ..................................... TAGTATGGCTTCATAACCTCTTAATCTCCGCTTCTACT 2052244 37 100.0 37 ..................................... TTCTTCAAAAACCCCGGTCTCGGACTGGTCGTTAACC 2052318 37 100.0 36 ..................................... CTCAAAAAAGGGCGTCGGTGTTGCAAAAATCGGGTA 2052391 37 100.0 35 ..................................... CAAATATCATGCACTTTGCTCTCGTATTCCTCAAA 2052463 37 100.0 35 ..................................... CAGCAGTGCGAGCTCTCCGGCACCGATTCCCCCAC 2052535 37 100.0 35 ..................................... TGCATACCCCGCCCTTTCAGGGCTGAATAATCTGG 2052607 37 100.0 37 ..................................... TAATTGCAGGAAATACACAGCGTTACGTTGTAACAGC 2052681 37 100.0 37 ..................................... AGGATGGGTCCGGAGCGACAAACCACGCGGATAAATA 2052755 37 100.0 35 ..................................... TTTTTGAGCGGCAACAGTATCCGCGGTCATGTTCT 2052827 37 100.0 35 ..................................... ATAAAATTTCAATAACGCATGGGAAACAGTTTAAC 2052899 37 100.0 36 ..................................... ACCGTGATCCTGTAACAGCCCGCCCTCGTCTGTCAT 2052972 37 100.0 37 ..................................... CCCATGAAACCAATACCATACGGCGGATCAGTTACAA 2053046 37 100.0 37 ..................................... TTCTAATTCTCTTAATTTATCCTCTGTAGAAAGCCTT 2053120 37 100.0 38 ..................................... TAAAAATGTGGGGCGACACATGCAGAAAAGCCGTATAT 2053195 37 100.0 35 ..................................... ATCGAGGCTCTTTCTGGGCCTAACGAGCTGAAAGA 2053267 37 100.0 35 ..................................... AAATGTTACAAAAGCTCAGTTCAAACGGGATTTAT 2053339 37 100.0 37 ..................................... TTGCATCTGTCCTGCAACTCCGTACTCCCCTAAGGGC 2053413 37 100.0 35 ..................................... ACGAATTAGCGAGAAAAGATGGCGTGGTTCGTGCA 2053485 37 100.0 35 ..................................... GTTGGGATCATCTGATGTTACCGGCGCGTTATGAG 2053557 37 100.0 38 ..................................... CAGGTAATACCGAGCGAGTCTCCGCATTTCCGATCCTT 2053632 37 100.0 35 ..................................... GAAAAAAACAGAAACAGAAGATTTTGTTACTGACA 2053704 37 100.0 35 ..................................... CCGCAACGGTCATTCTTACTGTTTCGATATGTCTT 2053776 37 100.0 36 ..................................... TTCCGCAGGTGAGCTTAACATGGCTACGGGCGCATG 2053849 37 100.0 38 ..................................... GTGAAGGTGTGGGGCCCGCTGCTACAGACGCAATAAAA 2053924 37 100.0 37 ..................................... TCGTCAATATATCCGTCACACTCGCCTGAGCTTTCAG 2053998 37 100.0 37 ..................................... CGTCATTAGATAATTGGGTTGCTGATTCGGTTGGGGC 2054072 37 100.0 37 ..................................... TTGATGGACCAGGCATAGGGTTTGAATATCAACTACA 2054146 37 100.0 37 ..................................... AATTTACATCGGGTACGGCTTTTACTATGACAGGTAA 2054220 37 100.0 36 ..................................... CTGGCAGGATGCTGGGGTCAATGACTCATGTAGTAA 2054293 37 100.0 36 ..................................... CCACTGGCGGTATAGCCGCTAATTCAGCGCCGACTG 2054366 37 100.0 34 ..................................... CCACGTATCATAGATATGCCCTGAAAAAAAGTAA 2054437 37 100.0 36 ..................................... AAAATAAGGCTCCGCTAAAAATTCTCCGCCATTTTC 2054510 37 100.0 37 ..................................... ACTCAAGAATTGCCACTGCCTTAGCCGGGAATCCGGT 2054584 37 100.0 34 ..................................... ATTTCGTCAAGTTTTAAAACTGTCACGCCTCCCG 2054655 37 100.0 36 ..................................... CCGTCCGGCCCAAAAAAAGAAACGACGGCAAAGTCA 2054728 37 100.0 37 ..................................... ATATTGGTAGCAGCTCTGAAATAGCCACGGTCAGAAT 2054802 37 100.0 36 ..................................... ATCCAGATACCGGAGAGGTTACGAAAAGTATTTCTG 2054875 37 100.0 36 ..................................... ATGCTACATCAAATATGGTAAATGTATCAAAAATTA 2054948 37 100.0 38 ..................................... CTTTACAACAGACTTTTTTAAGACCTTAAACATATCTT 2055023 37 100.0 36 ..................................... CTCCCCTGGCGGAAATCGGCAACGGGGCCGGGGCAA 2055096 37 100.0 36 ..................................... TTTTTTCAGCAGCAGCTTTTTGATTGCCATAGACCT 2055169 37 100.0 39 ..................................... TTAATTTTGATGGTTTCAAAGGGCAATTTGACGCCATCA 2055245 37 100.0 35 ..................................... ATGATACGGGAAAAATGCTGGCCTCAATGACTCAT 2055317 37 100.0 37 ..................................... TAAAACCCGCCGCATTTTTATGACCTCCGCCACCATA 2055391 37 100.0 36 ..................................... TCCCAGGTTCGGGTTGAAACAGCATTAAGAATTCTT 2055464 37 100.0 36 ..................................... TTTTTGAGCGGCAACAGTATCCGCAGTCATGTTCTT 2055537 37 100.0 36 ..................................... CTGAACCGGAGACTGTGACCGGGTTTCTTGGGAAAT 2055610 37 100.0 36 ..................................... CGTAAGTAAGCCAACTTGTCGCAATCATAGCTTTTT 2055683 37 100.0 36 ..................................... CGTAAGTAAGCCAACTTGTCGCAATCATAGCTTTTT 2055756 37 100.0 37 ..................................... ATGCCTCAGACAAACATGTCATCATGTAGGATAGCGG 2055830 37 100.0 36 ..................................... TTGAATTTAAATATTTACTATCACAGGCCGTCTTGA 2055903 37 100.0 37 ..................................... TAGGTGCATCGTCAGAAAAGGGGGATACCTCTATAAT 2055977 37 100.0 37 ..................................... CACAACACCTTGTCGCGTCATATCTTTAAGACTCCCT 2056051 37 100.0 37 ..................................... ACCATATCAGACAGGGTACAATGCCCAACAAAAACAT 2056125 37 100.0 37 ..................................... CTAGTCTGAGAGGCGCTAATCTGAGAGGCGCTAATCT 2056199 37 100.0 37 ..................................... ACAATAGGCAAAATATATGCCTATATATATAATATGA 2056273 37 100.0 35 ..................................... AGAATTACGCTGTAGGGAGTCTTAAGGACATGACG 2056345 37 100.0 36 ..................................... CTGCAATGCCTGTTGTGCCGGACCCGGCGAACGGGT 2056418 37 100.0 37 ..................................... TCACATTAGTATTATTGGCAGCGGCGGCAAATATTTT 2056492 37 100.0 35 ..................................... ATAAGATTTCAATAACACATGGGAAACAGTTTAAC 2056564 37 100.0 36 ..................................... GAATGGGGAGTCGGGTCTATCGCGGGTACGACGACG 2056637 37 100.0 37 ..................................... TTTAATTAATCTCTGTGAGCAACAATACAACAGAATA 2056711 37 100.0 36 ..................................... TATAACATAGCGTTTTTGTTAATCAAAAAATCTGTG 2056784 37 100.0 37 ..................................... CGAAACAGTCTGAAGCTGAGCAGGCAGCGGCGATCAG 2056858 37 100.0 38 ..................................... TTTTTAAGAAGTGTACGGAGGAATGTGTAATTTTTCTG 2056933 37 100.0 36 ..................................... TTCAAACTTCTTAACAATATCATTATGAACATCCTC 2057006 37 100.0 36 ..................................... ACATCTCAGCGTATGTTTATGATTTTGACTCTGATT 2057079 37 100.0 36 ..................................... TCTGACATTTTCACCTCTTCTTTTTATGCTAAGAAA 2057152 37 100.0 36 ..................................... CCTTACGCTATCGGCTATAGACTGAGAAATCATATA 2057225 37 100.0 37 ..................................... TCGGTCAGCGTAAACCGGGCTTGCTTCCAGGTTCCGA 2057299 37 100.0 37 ..................................... TTTTTTGCATAGGAGGGTTTATAATGGATAAAGCATG 2057373 37 100.0 35 ..................................... ACACATGGTGGAATGAGGTCCGTGATATTGTAGGT 2057445 37 100.0 35 ..................................... TGTATGACATGTTTGATCCGGCCAAACACGTTATT 2057517 37 100.0 36 ..................................... TGACATATAGCGAAACAACGAGCGCTTGGGAAAAAG 2057590 37 100.0 37 ..................................... TTACTGATAAGAATGGGAATCCGATATGGATTCACAT 2057664 37 100.0 39 ..................................... CTCGCCTGTTGTGGCGCGATAATTTCAAAGTCGAAAAGG 2057740 37 100.0 37 ..................................... CTGATCTTACCGGAGCTGATCTTACCGGATCGGACAT 2057814 37 100.0 37 ..................................... TCTGAAATGAGTGAGTCAAGTACTTTTACCCAGTTAA 2057888 37 100.0 36 ..................................... TTATGCGGAGTATGGTCGGATAGCTCCGGGGCCTGA 2057961 37 100.0 37 ..................................... ATGATACTGTAGAATCTAAGCTTTTGGGCCAAAGCGA 2058035 37 100.0 35 ..................................... CCAGACCCCGCTCCCTTTTGAAGAGTGGGATATAA 2058107 37 100.0 37 ..................................... CTTTAGGGAACCCGGAACCAAACAGCCAGCCGCCCAT 2058181 37 100.0 36 ..................................... CCTATTTCCGCAAGGGGAGCGAAGGCAAGGGCAAAT 2058254 37 100.0 35 ..................................... AACCTGCTGTTTTTTCAGCAATAAACTGATCTCTT 2058326 37 100.0 35 ..................................... CGCGCCTGTTGTGGCGAGATAATTTCAAGGTCGAA 2058398 37 100.0 37 ..................................... CAAAACTTCTTAGGCCTATTAAACAACGTCAGGTTGT 2058472 37 100.0 33 ..................................... TTAATCCTTCCACTCTTGCACACTCAAGTTCCA 2058542 37 100.0 34 ..................................... CAATGGAATGGTTAGCAATAAGGTTCAGGAAAAA 2058613 37 100.0 34 ..................................... CCCCGACTCAGCTCCCATATGTCGGGCTGGTCGG 2058684 37 100.0 37 ..................................... AGAAATTGAAGGGTCAAACCAGACATGGTCGGCCTGT 2058758 37 100.0 37 ..................................... AATACATACAAGATCCCGACACCAACTCAAAACCCTT 2058832 37 100.0 35 ..................................... ATTTTCTCATAACAGTTTCATTTCATTCGTTTCCA 2058904 37 100.0 37 ..................................... CCGAAACGACGCCCACTTATCACGACGCCTGCGGAAT 2058978 37 100.0 38 ..................................... CTGGTTCTTCGTCAAGATGTTCTTGGCAATCCGCCAAA 2059053 37 100.0 37 ..................................... CAATTAAAGCCGCCCCGCCTAATGCGATAACTTTTGG 2059127 37 100.0 36 ..................................... TGGGCTACCGGATCAGCTCAGAGTGTGGTTAACGGT 2059200 37 100.0 36 ..................................... AGGTCGGGGTTAACAGTTTTAATGGCCAAGTTGGTT 2059273 37 100.0 37 ..................................... ATTGTCGTCTCCAGCTCCCTCACCAGCTCGGCACCGG 2059347 37 100.0 35 ..................................... CATGTCTCGCGGCCACTCAAACCGCGTGTGTCTGG 2059419 37 100.0 35 ..................................... CTCTGATTACAGTTCATTCTCTTTTGGGATTTACG 2059491 37 100.0 38 ..................................... CGAGAAAAGATGGCGTGTTTCGTGCAGTCTTTCTGCAT 2059566 37 100.0 38 ..................................... TAAAAGTTAAGAGCTTTTACCAGGGCAAACCCTCCCTT 2059641 37 100.0 36 ..................................... CAGGAAAGCGGCCTTGACTCGAATATTCCCCGGTTC 2059714 37 100.0 35 ..................................... ATAGATCTCTGCACTCCTGACACAGACCATGAGAT 2059786 37 100.0 37 ..................................... CCCTTCCAAACAAAATTATTCCAAGAATCTATTTGAT 2059860 37 100.0 36 ..................................... TTAACGACGTGGATAATCAGATGTCTATCCGGTCCC 2059933 37 100.0 38 ..................................... ATTGAGGCGCTTTCGGGGCCTAACGATCTGAAAGAAAT 2060008 37 100.0 37 ..................................... ATAAGGATGTCACAATCCTGATAGCCCAGAAAGAAGA 2060082 37 100.0 37 ..................................... GTGGTTGCCGCACTTACCATAGATTGGCTTGCGCTAT 2060156 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 117 37 100.0 36 ATTCCTGAGCAACTTCCATTAAAACAAGGATTGAAAC # Left flank : AGAATCACCGGTTTCAACTGGTGTTTTACGGGCGTCTGATTCAGGAGAATTATGATGTGCCGGTCAGGAAAGGATTTCTTGTCTACACGCGGAGTCGGAATAAACTGGTTGAGGTGGCGATTACGGAGAAGATGTATGCGGAACTGGATGGGATTATCCGGGATCTGAGGCGGATTATTCGACGCGGTTTTTACCCCGAGCCTACGAAATACAGGGCACGGTGCGGGGATTGCTGTTATCGGAATATCTGCGAGCAGGTGATTTGAAGGATCATCTTATTGACAACAGTTTTTGATCTGTGCTAAGTGAACTCTGGTTTGAAATTATCGGAAAAAATGCTTTTTAAGATATTTTTTAATTTAAAATCAGCTTGTTGGTTGAACTCTGTCATGAAAAAAAGTACATCATTTAAGGCTTTTCAGCTATGAATAATGCCAAATATCGCTCTTTGAAAATTTGCGATAAGTTGCTGATATTAAATTATTTCGCTCCGAATGGCG # Right flank : CTTGGTTTCAGGTATTCAGTCGGGCTGTCTTACGGACTCCGCAACCTTCCTGAATGTGCTGTAAGACAGCTCTGACTTTCTCTTCCGGCAGATGCGACCTGAACAATGCTGTCCCCTTTCGTTCGGAAAAACGGACTCCGCATGTCCGGCAATACAATAACCTCCGTTTTTTATCTTTGCCGTAATGCATACATACTGTCAGACTTCCTGCCCCGCGTTTTCCGAAGTCGGGACAATCTTTATTCAGGCAGCAAAAATGTGAGAGTTCTTTCATCTTTCCATACCTCCTGATGAAACGATCGGATTTTCACCTGTTCTCCGGTCACTGTACAGGACAAAAAATGCTAACATGTTGATATTATTGAATGCTATGCCTTTGAGTAGAACGACCTAAGTATTTGATATTAAATATTTTTTGAAATCGCACATAATTTTTTGTCCTGTACAGTGGTTCACCGGTATATTATTATACTGATCCAATTTTGGTTTTTCCGGGCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAACTTCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 3 3117531-3126466 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEXT01000001.1 Desulfonema ishimotonii strain Tokyo 01 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3117531 29 100.0 32 ............................. AAATAACCACATAACCCGGCGCTGAACTCGGA 3117592 29 100.0 32 ............................. TCAAGGCAATCTGGTAAGTGTGATAAAAAATC 3117653 29 96.6 32 ............................T GAGCGGTAAAACCCGCCACGGCAGGAGCGTCC 3117714 29 100.0 32 ............................. CAGGTAGAAACATTGATTCAGGCCCACGCGGA 3117775 29 100.0 32 ............................. GAGGACAGCGCTCACAAGGTCAAGCGCCACGG 3117836 29 100.0 32 ............................. CGATTTGTAAATATCTGGAGTGAGTGAAAACA 3117897 29 100.0 32 ............................. CCTATGCCTGAGAAATTTCCTCTCTGATACGC 3117958 29 100.0 32 ............................. GGGCGTCGCGCCGTGGCCGATGAGATAGGCAT 3118019 29 100.0 32 ............................. GACGTTCCCGCGCAAATCATTGACAGAGGCTT 3118080 29 100.0 32 ............................. TCCTCTTTTTTCGCGAAATTCTTTATTTTTAC 3118141 29 100.0 32 ............................. CAGTAGCGAAACCCCGAACCGGTGAGCATGAT 3118202 29 100.0 32 ............................. GCTTGACTCGCTGAATAAGGAGCGTTCCGCTC 3118263 29 100.0 32 ............................. GTGCTTTTCGACATATTGCTGCTGTCGTTTTT 3118324 29 100.0 32 ............................. AGTCCGGGCCGAAATGCAGGCACATGGTAAGG 3118385 29 96.6 32 ............................A CCTGGCTGGCCCGGAGCCGCATTTATCACACT 3118446 29 100.0 32 ............................. TTTCATCAAACATCTCCTTTTGGTTTGGAATC 3118507 29 100.0 32 ............................. GATGTCAGGCGCTACTGTTATGTCACACATGA 3118568 29 100.0 32 ............................. GCACGTATGGCATGGGATTGAGTGAACTTATT 3118629 29 100.0 32 ............................. TTCGAGGGCGCACACACCACGATGGAGGACGC 3118690 29 100.0 32 ............................. GCTCTGTCCACCACGACAAAAAAGCGAAACGC 3118751 29 100.0 32 ............................. CTCCGTTATGGGCGGTATCAGCAGCGGCCTTG 3118812 29 100.0 32 ............................. GCAGAGGCCAGTTTCGGCACCGGTGCGGACGG 3118873 29 100.0 32 ............................. CGCCCCGTCAGCCGCCCACAACGCCTGCCCGA 3118934 29 100.0 32 ............................. CTCCGACCCGTTATTATTGCTCCACAACGCCT 3118995 29 100.0 32 ............................. ATTTTCTGGGTCTTCAGGATGATGAGGAAATT 3119056 29 100.0 32 ............................. ATTTTGCCTCAGATTGCGAGCAAAAAGACGTA 3119117 29 100.0 32 ............................. CTTTTGTCCCTCGGTGAGGATGGGTTTGATAA 3119178 29 100.0 32 ............................. GATCTCAGGCAGGCAGATGCTGCCCTGGCGGA 3119239 29 100.0 32 ............................. GAACTGGATTACGGATTCATCGGGTTCCGGCA 3119300 29 100.0 32 ............................. GCCCGGCCCAGATCCGAACCGGAACAGGCTTT 3119361 29 100.0 32 ............................. CATCTAATTTTGCGTTTGATTCTCCCACCGCA 3119422 29 100.0 32 ............................. TCAAGAACTAAATATCACCCGGCTCCGTCTCC 3119483 29 100.0 32 ............................. CGACATGTCTGATACGAGCATTTCCGGGGCTT 3119544 29 100.0 32 ............................. CTGAAACGCAAGCTAAGGTTGACCACGCAAAA 3119605 29 100.0 32 ............................. GCCGTTATCAGCGTTAACCTCCTGATTGTTTT 3119666 29 100.0 32 ............................. ATATGGCTCACGTCGAAAGAGAGCTGATACAG 3119727 29 100.0 32 ............................. AAATCAAACTCTGGTTGTTTACTCTGTACGCC 3119788 29 100.0 32 ............................. GCACTGGTTGCGTTTGCCCTGTTTGTGGTGCT 3119849 29 100.0 32 ............................. GCCACCCCCCACATCATCGAGGCCAGAGACCA 3119910 29 100.0 32 ............................. TTTTACAACAGGGATGTGCCGAGCTAACCATC 3119971 29 100.0 32 ............................. CAACCTATTGGATTTACTGCTAATCCTAAACC 3120032 29 100.0 32 ............................. CTGAAAAACCAGTTGCCCTCATGGGTTTTTGC 3120093 29 100.0 32 ............................. AGTTATTGACCTTATCCACCTGTCTGTTCTTT 3120154 29 100.0 32 ............................. GCACTGGTTGCGTTTGCCCTGTTTGTGGTGCT 3120215 29 100.0 32 ............................. GCCACCCCCCACATCATCGAGGCCAGAGACCA 3120276 29 100.0 32 ............................. TTTTACAACAGGGATGTGCCGAGCTAACCATC 3120337 29 100.0 32 ............................. CAACCTATTGGATTTACTGCTAATCCTAAACC 3120398 29 100.0 32 ............................. CTGAAAAACCAGTTGCCCTCATGGGTTTTTGC 3120459 29 100.0 32 ............................. AGTTATTGACCTTATCCACCTGTCTGTTCTTT 3120520 29 100.0 32 ............................. CGCACGGCTGGCAGATGAGCGCACTGGCAGCC 3120581 29 100.0 32 ............................. CCGGACTACGAAATGGCCGATACCAAAAAAGA 3120642 29 100.0 32 ............................. TCATCCAATACGTCCCGGTCTTTCGGAATGGT 3120703 29 100.0 32 ............................. CTCTGATCCGTTATTACTGTTCCAGAGCGCCT 3120764 29 100.0 32 ............................. GTATTGACAGGGACAACGTTACCTGTAACGGG 3120825 29 100.0 32 ............................. AAAAGTACAAGACATAATTATCCCAAAACATT 3120886 29 100.0 32 ............................. CTGACCGAGGACCAAAAGGACGCGGATTTTAT 3120947 29 100.0 32 ............................. CATTGAACAGGTCGCCCGGCTGTATCACCAGA 3121008 29 100.0 32 ............................. ACTGCTGAAACGGGATCTTCACCAAACGCTTT 3121069 29 100.0 32 ............................. GGAATCCGAATGATGCAGACCGTACCGACCAG 3121130 29 100.0 32 ............................. ATATTTTGCGACAAATCAAGGAGCGGTAATGG 3121191 29 100.0 32 ............................. CCGACACGGCGGCGTATCAGCGGGTCCGAGCG 3121252 29 100.0 32 ............................. CGCTATCAGACGGACTGTGGATGACCCTGGCG 3121313 29 100.0 32 ............................. TCTGAGCGACCAGGGCGTCATGCCTCATGCCC 3121374 29 100.0 32 ............................. TCTGAGCGACCAGGGCGTCATGCCTCATGCCC 3121435 29 100.0 32 ............................. TACAAATGAGCGCGAGTCATACCGGAACGAGG 3121496 29 100.0 32 ............................. CGTCACACCGGCAGGGAGAACCCCGCTCGTAT 3121557 29 96.6 32 ............................C GCGCTACCCTGTGGGACATTGACGCAATCTCT 3121618 29 100.0 32 ............................. GATATATTAATGGCGTCAGAACTGATTATCGT 3121679 29 100.0 32 ............................. GGCGGAAAGAGATCGCGTCAATGGCCCACCGG 3121740 29 100.0 32 ............................. CCGATGCCGAACCCCTGCATTTCCTCTTCGTT 3121801 29 100.0 32 ............................. CCATTCCTGGTGTATCCAGTACATGCCGCCCT 3121862 29 100.0 32 ............................. GTTTTTTTTCTCTGTTTCGACAATGACGACGC 3121923 29 100.0 32 ............................. GACATCCGTCGCGGCATTCTCTGGCTGCTGAA 3121984 29 100.0 32 ............................. GAGTAGCAGAATGAGAGGGATAGATCAACCAG 3122045 29 100.0 32 ............................. GCGGGACTTTCGGCAGATCCTCATTCCTCCAG 3122106 29 100.0 32 ............................. TCAGTTTGTCGCCTCAGTTTTCGGTGCTGTCT 3122167 29 100.0 32 ............................. ACTGCTGGCAACTTTTCAGCGCGATTTTGGCA 3122228 29 100.0 32 ............................. TAAGAGGGCACTGCTCATCCCTCAATCAGGAT 3122289 29 100.0 32 ............................. GACGGCAGAATCATCATCGTCAACGGCGGGGA 3122350 29 100.0 32 ............................. GAGATCAGCCATACCGCAGCCCTGGGCGCGTC 3122411 29 100.0 32 ............................. GCTGCGTTCGAGTCCCAGAAGGATGCAGAGGG 3122472 29 100.0 32 ............................. GCGGACGGCAAATTGAAAACAACGCAGGCGCT 3122533 29 100.0 32 ............................. GCCTCCGGCGAGCTGACATTCACGGGGAAACA 3122594 29 100.0 32 ............................. TAATCCTGCTGGTACTGGCTGTTGTACTCAAT 3122655 29 100.0 32 ............................. CTTCCTCCTCCTTAGCGGCAACCCCGCCGCAA 3122716 29 100.0 32 ............................. AACAGGAGATGGCTATAATAACAGGGCCGTCC 3122777 29 100.0 32 ............................. GCGCTTTACCGGAGCGCCCTGCCCCTTTTCTT 3122838 29 100.0 32 ............................. GATGTCTCCCCATGCAGGCCAACCATCTATAA 3122899 29 100.0 32 ............................. CCGCCCTCGGACCCGATAGCCCCGCCAAGGCC 3122960 29 100.0 32 ............................. CCTCACAAGGACGCCATGCAGGCGCTGAAGGC 3123021 29 100.0 32 ............................. GATGGTTCGCTATTTGGTGGAAGCGTGGGGAG 3123082 29 100.0 32 ............................. CGCTCCGGCGTCCTGCATCAGTTCCTCGGTCA 3123143 29 100.0 32 ............................. CTTATGGCTATCATGTATCTGACCGAGGAACT 3123204 29 100.0 32 ............................. ATGAGGCTGCTTCCATAAAAACACTCCATGAC 3123265 29 96.6 32 ............................A CATGCGTGTATTTTTTAGTGTGTCTGAGAGCC 3123326 29 100.0 32 ............................. CCGACAAGCGCCGTAGCTGTCGCTATTATCTC 3123387 29 100.0 32 ............................. TTTGGCATACTTGATTTTCTCTTCATATTCGA 3123448 29 100.0 32 ............................. GCTACCAGAAATTATTATGCGTTAAAATTTCA 3123509 29 100.0 32 ............................. CGGATAAAATCAGACAGGAAATTAACGGAATA 3123570 29 100.0 32 ............................. CTCCCGGACGGTGTCAACGATATAGACGAATA 3123631 29 100.0 32 ............................. CTCCCGGACGGTGTCAACGATATAGACGAATA 3123692 29 100.0 32 ............................. TCAGTTACAGGATTTATCGAACCGTCAGAGTT 3123753 29 100.0 32 ............................. GCCACGCAACAGGGCCGCATTCCGTTTCTAAC 3123814 29 100.0 32 ............................. GGCTGGTGGCTGGACGGATCGGGCGCATATGT 3123875 29 100.0 32 ............................. GGCTGGTGGCTGGACGGATCGGGCGCATATGT 3123936 29 100.0 32 ............................. TCGTTTCGGCAGGCCCGGAAAGAGGTCAAAGC 3123997 29 100.0 32 ............................. TCCGGTCAAATAGTCCTTTATGGGATGAAACT 3124058 29 100.0 32 ............................. ACGCCTTTTGCTTATCGGGCCAGAGACGCAGA 3124119 29 96.6 32 ............................A TGTCTATATATGCCTCCACCGGAGATCGTGGC 3124180 29 100.0 32 ............................. CCTTGGACGCGACAGAGGTAGAAACGGCCCGT 3124241 29 100.0 32 ............................. CGTGTTTAAAAGGCCGGAATACTGGATCGGCA 3124302 29 100.0 32 ............................. CCCTCGGTCTGAACCTTCATTCGGATTTGCCC 3124363 29 100.0 32 ............................. AAACGTCGCCAGATGTCCGTCCGGGATTTCAA 3124424 29 100.0 32 ............................. GACTGCCCCGGCTCACAGGAATCGGAGAGTTG 3124485 29 100.0 32 ............................. CAGGCGAACGAAACCTAAAGATCAGATCATCC 3124546 29 100.0 32 ............................. GCATATCCTGACTGGTTAGCGCTGCCAGAGAG 3124607 29 100.0 32 ............................. CTATTGTTTACGGATCGGCAATGACCTGGCTG 3124668 29 100.0 32 ............................. AGATAGACATTGCGCCGCTGTTCCTGATGCTG 3124729 29 100.0 32 ............................. CACCCGGCCCTTGCGGGTGCATGGTGCGGACC 3124790 29 100.0 32 ............................. CTGACGGTGTACGACGCGCCCTGGGACGCGGC 3124851 29 100.0 32 ............................. ATGGATACAGACCCTCTCGCACCAAGCCTGTA 3124912 29 100.0 32 ............................. TCCGAACCGATACGTTCAGCTCCGCTGCCATC 3124973 29 100.0 32 ............................. GCCGCCCAGATCGCCTCCGAGTTTGAGGACGC 3125034 29 100.0 32 ............................. TCGTCGGACTTGTTCAGCCCCCGCTGATACCC 3125095 29 100.0 32 ............................. TCGTCGGACTTGTTCAGCCCCCGCTGATACCC 3125156 29 100.0 32 ............................. GGCCTTTTTCATTTTCTGAAGCGTCAGGAAGG 3125217 29 100.0 32 ............................. TGTTGGCAGAGCGAAACAAGGTGTCTGGGGCC 3125278 29 100.0 32 ............................. GACTGGCGCATCTATACCGGGAGTGTACAGGA 3125339 29 100.0 32 ............................. CCCTGTGAGTCCGGTCAGCAGCGCCAGCGCGG 3125400 29 100.0 32 ............................. CCTCCTCTCTTTACGACCGGCGAGAGGATTAT 3125461 29 100.0 32 ............................. TATTGGCGATAGATATCAGTCGCTGTCAGATC 3125522 29 100.0 32 ............................. CGCCGTCCGGTATGCGGGCGGCGCTTTTTTAT 3125583 29 100.0 32 ............................. TTAAAAAAGCCGCTTTTGAGAGCGGCAAGGCC 3125644 29 100.0 32 ............................. TACATGGTACTCGATGCCCCAATTCTCGTAGC 3125705 29 100.0 32 ............................. ACATTATTTCGGTCAGCAGGGTCATGGCCCGG 3125766 29 100.0 32 ............................. ACAAACCTTTTGCCGTCAACTGCAACCGCCTC 3125827 29 100.0 32 ............................. CTGTTCAATGTCTGGGGTGTAATCTTGGCCGT 3125888 29 100.0 32 ............................. ACATCAGTGAGGAGGAGCGGTCGTTCCTGGCC 3125949 29 100.0 32 ............................. GTTGTTACTCCTCGTTAACCTCGCCCAGCTGG 3126010 29 100.0 32 ............................. TCCCAGCAGACAGATGGATTTGCCCTTGTGCT 3126071 29 96.6 33 ............................A GTTATGTCCGCCGAAATAGCCTCCCATGAGCGC 3126133 29 100.0 32 ............................. CGAAATCAGGAAATCACATCCGGGTATGATGA 3126194 29 100.0 32 ............................. GGGGGCGTCGCCCTTTCTTCTCCCTGGCCTTC 3126255 29 100.0 32 ............................. GGCCGTTTCGCCCGTATCGAGCGGGTCCGGGC 3126316 29 96.6 32 ............................A TCCGCAATGCTGGCCCTGGCTCCGACCGTTTC 3126377 29 100.0 32 ............................. CGCATCGAGTGGGAACACGTTGTGCAGGCTGC 3126438 28 86.2 0 ..............C........-...AA | C [3126459] ========== ====== ====== ====== ============================= ================================= ================== 147 29 99.7 32 GTTTACCCCACATGTGTGGGGATGTTTCG # Left flank : TTAACCCTGTGTGTGGGATGTTTCGGGGGACAGGCTGATGATGGTTGTTGTTGAGGTCGAGAATGCGCCGGATAAACTGCGGGGAACGCTGACTGCCTGGTTTTTGCAGGTACGGGCCGGGTTGTATGTGGGGACGCTGTCTGCCCGGATGCGGGATCAGATATGGGTGATGATTACGGGGGTCCGGGATGATTTGTTTTCCGCAGTGATGGTTTTTCCCAAAAATAATGAACAGGGGTTTGGGATGCGGACGTTTGGGAAAAATCGGAGAAAGGTGGTTAATGTTGACGGGTTGGAATTGATTGAGTATATACCTCATTTTGAAAGAGAGAATGCTGAGTTTGCGGAAGGCGTGATCGGTAAAAAAGAACCATAACGTGTAATATGCTGTTTTTGAAAGAAAAAAGTTTTTGGCTTCAATATTTTGAATTTATTTGAAATATTTTCTATGATTTTTCCTTGCTTTTTTACCATTTGAAATGTTTGGAAAAAGAGCAAGT # Right flank : ATAGATAAGTTCCTGAAGTAATTCCGTGATATGCGCTGTATTCCGTCTTTCGATCGGAAAACAGGCTATCACGGAATATTTACAGGTGTCCGGAATCGTAAAAAGAATGATCAGGCAATAATCCGAAACCGGTAACCGCCTGAGATTATCCCAGCACCTTCAGAAACGCGGATTCCCCGGCCGGGCGCATCCCGAACTCCTCGCCTGCGCCGAGAATGGCGTGGACCATATTGTGGCCGTAGCCTCTGGAGCAGGTGAGCAGCACCACGCCGTCGTTTCCGTCCCGCTTCAGCACGGTGATCTGACAGGGAACATGGGAAAGCGGCCCCTGGATCAGAAACGGGGCTTTTTTTGCCGGATCGGCAAGGTCAAGGCCTGTCAGCTTTTCGGTGATGGAAAACACATTTTTTCCGGTCAGGGCCAGAAAAACCGTGGCCTCGGTGGTTTCGGTAAAGGCCGCCGCTTCGGGCGATTCGGGCTGATCTCCCGCCAGATGCAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCCCACATGTGTGGGGATGTTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 5309815-5310500 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEXT01000001.1 Desulfonema ishimotonii strain Tokyo 01 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5309815 36 100.0 35 .................................... TTTTTCTTTTGTTATCAGATTAAACACCCGATCCG 5309886 36 100.0 35 .................................... TTGGTATGTCTATTTTCACTTTGATTCTCCTTTCG 5309957 36 100.0 36 .................................... TGATACGCCGATAACAGCCGGAGTGCCCCATATCCA 5310029 36 100.0 36 .................................... TTGTGCAATTCCTTTCTTTCTTTTTTTCATCACTTG 5310101 36 100.0 36 .................................... ATACCCACAGAGCCCGTCAAGTTTTATTGCATATTT 5310173 36 100.0 36 .................................... ACATACGTCATATTTAACAAATCAGCGTTCATTAAA 5310245 36 100.0 36 .................................... ATACCCACAGAGCCCGTCAAGTTTTATTGCATATTT 5310317 36 100.0 36 .................................... ACATACGTCATATTTAACAAATCAGCGTTCATTAAA 5310389 36 100.0 40 .................................... GACTAACCATATCGGGCGTAATCTCTGCCCAAGCATACCG 5310465 36 88.9 0 ..............................AA.T.A | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 98.9 36 GTCTGAAACATTGCCCCGCCTTGAGGGGATTGAGAC # Left flank : ACGGGGTCCGGGTCCAGAAGTCGGTTTTCGAGTGTCCGAACCTGACGGAGCATCGGTTTGTGCGGATGAAGGAACAACTGGATGCGGTGATAGATCACAGTACGGATACGTTCCGGTTTTATTTTCTGTGCCGGGAGTGTGTGGCCCGGACGGAGTTTTCCGGGATCGGTGAGCCGCCGGTTACGGTCTCTTACCGTATCATTTGATTTTTGTTTTGAATTCGGTGTGTTGGGATTTTTTCAACCCGGTTTTTCCACGCATCTCCGGGGGGCAGGGTGTCTCATTATGATTTTGGGGGATATTTTGAGTGAGATCAGGTGCTTGGATGATTTTTGGGTGCGCGGAGATGCGTGGAAACGAAAATTCTTTTTTATTTCAGACGGATGGGGTGTTTTTGTCGGGAAAGGCGGTGCTGGAAAATGGAACCGGAAGCGTTTTTCGGGGGGATGCGTGGAAAAGGGCTTGTCAGGCCCCGGTTTATCGTGTAGTGGGGGGGAGCA # Right flank : AAAACGGGGTGCATGAGCGTCGCTCATGCACCCCGTTTTGTATTGGTATTATTCCGTCGGGAATTCATTCCCGGTTTGAAAAAATCGCCGTGTTACCGCCTGGGAATAAATTCCCAGGCTAAATCATCTGAAACCCGCTGAAGCGGGTTGACCCGGCGTTACAAGCGAGTTTCGGAGCCATTCGGAGTACGTTTCACCTCCCCGATTCACTGCATCCGCAAATCTTCAACAGGCTTCAGCACGGAAACTCATTTCCGGGCGGTCGCACGGAATATCCTTCAAAATTGGAAAAATCGCTCGGAAGCTGTTTTAAAAATCCATTCGGAGTGCAAAAGTTAAGTCCCCGAAGGGGCCGATCTTTTGCAAAATTTGCGAAAAATCGGCCTTCGCCCTCAGTTTTCGCACGCCTCTTCCGAGTTGCCGGTATTTTTAAAACAGCTTCTCATCTTTCCGACGCTCCCGCGTCGCGTGAAACCGGGCCTGGGCAGGCTGTCATTTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAACATTGCCCCGCCTTGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 6344392-6338502 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEXT01000001.1 Desulfonema ishimotonii strain Tokyo 01 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6344391 32 100.0 35 ................................ GGTCGGGGATTAAATATATTTTTTAAAATAGTAGT 6344324 32 100.0 36 ................................ AGGGCTCACCGGCATAGCTATGACCGGTTTGCAAAA 6344256 32 100.0 35 ................................ CCTGTGATCTTTCAGAGTTTTTTCTAACTTATCTC 6344189 32 100.0 34 ................................ CGGTGACTCCATAAAGATAATTGGGTATAATTTC 6344123 32 100.0 34 ................................ TTTGTAATGCGTTGTTTTTACTACGATTCCTTAA 6344057 32 100.0 34 ................................ ACAGGCTGAGATATTTTTATTTGCCTGCATCCGC 6343991 32 100.0 35 ................................ CACGTCTCTCTGATTTTTTCGCATGTCAGAGGGGC 6343924 32 100.0 35 ................................ CATTTTTAAAATACGCTTCCCAGATATCTCCAGGA 6343857 32 100.0 36 ................................ TGTCTGTATCGGTGTTTCGTCATGGTATGGCGTATC 6343789 32 100.0 34 ................................ TCTGCCATTCCACACTCTGAACCCGCTTAAGTTT 6343723 32 100.0 35 ................................ TTAAGATTGTCATAATAGGTCATTGCAAAATCACA 6343656 32 100.0 35 ................................ GGTAAGTTTCGTCCAGATAAGATCCGCGCCTGCAA 6343589 32 100.0 35 ................................ CAGTTTTTAAGGGCATTTATTGTTGACTCGGTGTC 6343522 32 100.0 35 ................................ AAATTCCACGCGATCCCCATTATTACGGGTTTATA 6343455 32 100.0 34 ................................ AAAGATGGGTTGGCTAAAACATAAAAGCCAATAT 6343389 32 100.0 34 ................................ AGAGCATTTATCGTTGCATCGGTGTCTTTATTAT 6343323 32 100.0 35 ................................ CACGAATAGCCGTTAAAGGGCAGGGCAATAAGATT 6343256 32 100.0 34 ................................ CGCTGTAGTTATTTTTTTACGCGCATGTTTCGAT 6343190 32 100.0 35 ................................ CACCATTCAAGAGCGTTTGGGTTCATATCATTAAC 6343123 32 100.0 35 ................................ ATAGCCGCATGGTTGGGGAACCTTAACCCCCGGCA 6343056 32 100.0 34 ................................ GGTCCCTGCCGGTATTACCTGTCTTATCCAGACA 6342990 32 100.0 34 ................................ TACCCTATCTCTTTTCATAATCTCTCATTTTTTT 6342924 32 100.0 36 ................................ CTCCTGCGTCTTCAAAATTTGCGCATTCCCCATTAT 6342856 32 100.0 34 ................................ ATCCCTGTGGTACAGTGTTGTAATTATTCTCATT 6342790 32 100.0 34 ................................ TGGCAGCCTCTCCGGTGATTGCGAAGCGGATTTT 6342724 32 100.0 34 ................................ CACCATTCCAGGGCAGCAGGGTGCATATCATTAA 6342658 32 100.0 34 ................................ TGAAACACTGTGATATTCGCAACCTATGCGAATA 6342592 32 100.0 36 ................................ ATTCTGAGTAGGATGAGTGGGATGAGTACTCCTTTT 6342524 32 100.0 35 ................................ CTACAAGACCTGAAAAGTTTTTTAAGCTATCAGGC 6342457 32 100.0 35 ................................ TTTTTAATTTTTGTAAACCCTATCACAGCCTCTAA 6342390 32 100.0 33 ................................ ACTCCCAAATCTGTGTAGCTCCAGTCTATACTT 6342325 32 100.0 34 ................................ CATGCTGATCACCGGGGACACTGTTACGGATGGT 6342259 32 100.0 35 ................................ CCTTTTTTTGCCACCGCGCCCCCGCTTTTTTCAAA 6342192 32 100.0 33 ................................ ATAACGACGGGACAGTTGAAGATTCGTGGGAAA 6342127 32 100.0 34 ................................ GCACGACTGTGTGACGCCTGACCTGAATTGCGAA 6342061 32 100.0 34 ................................ TCTAATTAATTCAACCCTACGCTCTTTTGCAGAG 6341995 32 100.0 35 ................................ TTTTCAGAGCCATCGAAAATGAATTTGAAAGGATG 6341928 32 100.0 33 ................................ CGTGTCCCTAAGATCCGCGCCCCTAAGATCCGC 6341863 32 100.0 35 ................................ GAAATAATTCAGAGTAGCTGCACTTGTTTTGTGAT 6341796 32 100.0 33 ................................ CCTTGAATTTATCTCCGTGCAATATGGAGCGGA 6341731 32 100.0 34 ................................ TTTGCTCCTTATTTAGATTTCATTCCGAGCGTCT 6341665 32 100.0 35 ................................ ACATTTAACCAGGGAATATAAATTAATTAACACAA 6341598 32 100.0 34 ................................ AGCGCAATATACAGTATAATAGATGCCAATATAT 6341532 32 100.0 33 ................................ ATTCCGATATAACACCTGATGTAATCCGCCATG 6341467 32 100.0 34 ................................ TACGTTATTTATTATGCGATTACCAGGCCGTAAG 6341401 32 100.0 36 ................................ GCCGCCTGAACCGCCTGAACAATCTGGAAAGCCTGG 6341333 32 100.0 34 ................................ TATTACGGCAGCTCGGTACCGATTAACAGCCTGA 6341267 32 100.0 35 ................................ TTTAGCTGATAATTCAAAACTCCTGATTATCTCAG 6341200 32 100.0 35 ................................ GGCTGATATTAATTCAAAACGAGAAGCTCATACCT 6341133 32 100.0 36 ................................ ATGTATGATCCGGACCTAAAAAAACGGGGATGGTGG 6341065 32 100.0 34 ................................ TCTCATCTGGTCAAGCGGTTTAGCTGTTGCGATC 6340999 32 100.0 35 ................................ AAGTCAGGAAAGTATGGCGAACTGATTAAGATTGA 6340932 32 100.0 34 ................................ TAATGAGATTAATGACATGACCCCCAAGGCTCTT 6340866 32 100.0 35 ................................ ATATAAACACCCCCCTCCTTAACATCTATCATCAG 6340799 32 100.0 33 ................................ TTTTAGAATCAAGCTGTTCAAGAATTTCAGAAA 6340734 32 100.0 34 ................................ CACTCCGAAATTCGGGTTTTATTTGCAGATTTTT 6340668 32 100.0 35 ................................ AACAATCTCTGGGTCTTGGGTATAATCAAAGACTT 6340601 32 100.0 35 ................................ ATTTAAGCCTTTGGGGGGGTAATCTCTGAGAGGCT 6340534 32 100.0 33 ................................ CGTCATTTTTATTTCGTCCTCCATGCACGGAGA 6340469 32 100.0 36 ................................ ATGAGTATCAGACCGATGAACAATTATTTGTTCAAC 6340401 32 100.0 35 ................................ TGCCCGTGGACAATCAGCGTCCCCTTTACCGTTAC 6340334 32 100.0 35 ................................ AGGTCTATACGGATTGTGATACGGGATATTCTGAT 6340267 32 100.0 35 ................................ AGCATATCATAGGCGATCAGCCACGACATGCCGAT 6340200 32 100.0 34 ................................ GCAACATGAAAACAGTATTTACAACACTTATGAT 6340134 32 100.0 35 ................................ AGGACGGCAACCGGTGGGCGCTCAGGGCGGAAGCC 6340067 32 100.0 33 ................................ TCGGATGTCCAGCCGGTGGGCAGTACCATGAGT 6340002 32 100.0 34 ................................ ATTAAATCTTCGGGTTTTCCGAAAAGCTCAACCA 6339936 32 100.0 33 ................................ TTTTCCGACGCATTTATAACGGCTGATTGGAAT 6339871 32 100.0 34 ................................ ATTCTCTCGCTCCTGAACCGAAAAGCCCGACCGG 6339805 32 100.0 35 ................................ AGCACACAGTAGCGCCTTTCTTCCACGCCCGCAGG 6339738 32 100.0 35 ................................ TGGCCAGTCCATGCCGTGATTCACGAATACGGATT 6339671 32 100.0 36 ................................ AACTCCGGATTGAGAGCTGATTTTCGCCCTGTGGGA 6339603 32 100.0 34 ................................ ATCATTTTGATTCTGAGACAACTGATCTTTAATA 6339537 32 100.0 33 ................................ CTCGATTTAATTTCAACATCCTCAGCGCGATCA 6339472 32 100.0 33 ................................ ACCCTTAAGATAATCACAAAGGGCATTTTGATC 6339407 32 100.0 34 ................................ GATCTGTCTCCGTCCCCTGCGTGGAGGCAGAGAC 6339341 32 100.0 37 ................................ CTTGACCGCTGCCAGCGCCGCTGCTGTCTCCGTGTTT 6339272 32 100.0 35 ................................ GTCTTCAAGTTTTATTCCGACCGCCCATGCGCCAG 6339205 32 100.0 36 ................................ GTTTTTGCATTAAAAACAGTGTTTTGCGAGTCATGA 6339137 32 100.0 34 ................................ TCAATCGCTTTTGTGATAATCCATAGCATCGTCC 6339071 32 100.0 35 ................................ AATGAACGCATTACCGTAGGTCTCCATATCGGTTC 6339004 32 100.0 36 ................................ CCACGATCTTGTTTATCAGGAGACAGACTCTTATAA 6338936 32 100.0 35 ................................ CGCCCTGGTAGACCTGAGTCGCGACAACCTCCATC 6338869 32 100.0 36 ................................ TAAGAAACGGGCGCGCGCAATGAGTGGCTGTACAGA 6338801 32 100.0 34 ................................ CGCATAAGTATGCACTTTTTTCGGAACCCTGTAG 6338735 32 100.0 36 ................................ CGAATACCTCCGCCTCCCTGTCAAAGACAGCCCCCA 6338667 32 100.0 34 ................................ TACCTCGGTTTATAGATCAGATAAATATCAACAG 6338601 32 100.0 35 ................................ ATGGCAGAGGTCCGGGCAAAATTGGAGGAACGGGA 6338534 32 90.6 0 A.........C.............G....... | G [6338517] ========== ====== ====== ====== ================================ ===================================== ================== 89 32 99.9 35 GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC # Left flank : AGATAAGAGGAGGGGCAATTATGTTCGTTTTGGTCAGTTATGATGTGGCAACGTCGGATGACGGCGGGCAGCGTCGTCTGAGGCGAGTCGCCAAAGCGTGTAAGGATTACGGTCAGCGGGTCCAGTATTCGGTGTTTGAGTGTATTGTTGATCCGGCTCAGTGGGCCGTGCTTCGGCAGCGGCTGATTGATGAGATTGATCCGGGGCGGGACAGTCTGCGGTTTTATTTTCTGGGGTCAAACTGGCGTCGCCGCGTGGAGCATGTCGGGGCAAAACCCGCTATTGACCAAGAGGGATTGCTGCTGGTATAGAAAGCGCTTGCGCGAACCTGAAGCGCACATGATAAATCCTTCATGCCGGATTTCGGATATAATTTTATAAAATACAGTAAGTTAAGTCTGTATAATTTTTTTAAAAAAGGTGAGCGAATCGCCTTTTTCTCCGGGGTTCGCGGAACACCCGGAATATTTCTTTTTGTTTCGGCAAATTACGCCGAAGCT # Right flank : TAACGGGACTGCATCATCTGCTGCATTTTCTTCTCAAGGATTTCAGCCTTCTTATGTTCTCCCCGCTGATGCAGCTCCTGTATTTCCGTTACCAGATTCATCACCTCCATCATCTTATCCACCTGCTGCGCGGCCTTCTGATGCTCAGGAGAGGCATCCGCATAGCCCTCCACCTGACTGGGATCAAACAATGAATCGGGAACATCCGTGTTGATTTTCAACGACGTTACCGTCATCTGCTGAACCATTCCGTCACTCTCCGTCACCATTTTCCAGGGAAAAATCACGCCCTCAACAGTTCTGAAATCCGAGTTTGTCGTGGTTTCCCGCCCTTCCCCGTCGAAATATTCCTGCTTCACCAACACATCATTGTCCGCACCGATCCACAGTATTTCATATTCGCCGTCAGGATAGCTGGCTTTGATTTTATGACATTTCATCGTGGCAACGGTCTCTTCTGTCAGATATGCCACTTTCTCAGGCGTCCGCTCTTCCGCCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //