Array 1 19334-17491 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNL01000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1502 NODE_43_length_29679_cov_4.06381, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 19333 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 19272 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 19211 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 19150 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 19089 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 19028 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 18967 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 18905 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 18844 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 18783 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 18722 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 18661 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 18600 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 18539 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 18478 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 18417 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 18356 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 18295 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 18234 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 18172 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 18069 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18008 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 17947 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 17886 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 17825 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 17764 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 17703 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 17642 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 17581 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17520 29 96.6 0 A............................ | A [17493] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6660-5717 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNL01000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1502 NODE_77_length_22891_cov_4.49088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6659 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 6598 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 6537 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 6476 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 6415 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 6354 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6293 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6232 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6171 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6110 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6049 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5988 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 5927 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 5866 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 5805 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 5744 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //