Array 1 25989-25288 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRK01000004.1 Escherichia coli strain MOD1-EC5179 MOD1-EC5179_4_length_201305_cov_100.914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25988 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 25927 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 25866 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 25805 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 25744 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 25683 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 25622 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 25561 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 25500 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 25438 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 25377 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 25316 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43105-41490 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRK01000004.1 Escherichia coli strain MOD1-EC5179 MOD1-EC5179_4_length_201305_cov_100.914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43104 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 43043 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 42982 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 42921 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 42860 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 42799 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 42738 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 42677 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 42616 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 42555 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 42494 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 42433 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 42372 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 42311 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 42250 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 42189 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 42128 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 42067 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 42006 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 41945 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 41884 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 41823 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 41762 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 41701 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 41640 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 41579 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 41518 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //