Array 1 1469659-1470687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035787.1 Clostridium tetani strain Harvard 49205 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1469659 30 100.0 37 .............................. TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGG 1469726 30 100.0 35 .............................. TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC 1469791 30 100.0 37 .............................. ATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA 1469858 30 100.0 37 .............................. TTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 1469925 30 100.0 37 .............................. TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAA 1469992 30 100.0 37 .............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA 1470059 30 100.0 37 .............................. GGATACGAACAACAAGTATTAAATATATCTAAATCAA 1470126 30 100.0 36 .............................. CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTA 1470192 30 100.0 36 .............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 1470258 30 100.0 36 .............................. TACTTATTGTAGGTGCTTTTTCTTATTATCTAAGAA 1470324 30 100.0 37 .............................. CATTCNNNNNNNNNNNNNNNNNNNNNNNNNATCAAAA 1470391 30 100.0 36 .............................. TTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNTTT 1470457 30 100.0 37 .............................. TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAC 1470524 30 100.0 37 .............................. GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1470591 30 100.0 37 .............................. TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAA 1470658 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 100.0 37 ATTTACATTCCAATATGGTGCTACTAATAC # Left flank : ATGAACAAGTAACAATGAATAATGAATAATTATGGAGGATTTTCTTCCTTTCGTCAGAAAATCTTACATTTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAT # Right flank : CTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTACATTCCAATATGGTGCTACTAATACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACATTCCAATATGGTGCTACTAATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTTACATTCCAATATGGTGCTACTAATACTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTTACATTCCAATATGGTGCTACTAATACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAATTTACATTCCAATATGGTGCTACTAATACGCGTTCACCCACAATATGCTATATGTCTATAGTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTGCTACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1574125-1573834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035787.1 Clostridium tetani strain Harvard 49205 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1574124 31 100.0 35 ............................... TTATATTTGGATTAACAGTTGTTAATTTAGCACCA 1574058 31 100.0 33 ............................... AATATTTAAGTTTTTCTCGAACCTCTGCAAAAC 1573994 31 96.8 33 ..............................A AAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 1573930 31 100.0 35 ............................... GCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 1573864 31 90.3 0 ............................TAA | ========== ====== ====== ====== =============================== =================================== ================== 5 31 97.4 34 GTTGAACAATAACAAGAGTTGTATTTAAATT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAYGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATYGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTATA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1592877-1592328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035787.1 Clostridium tetani strain Harvard 49205 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1592876 30 100.0 35 .............................. GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT 1592811 30 100.0 36 .............................. CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA 1592745 30 100.0 34 .............................. CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1592681 30 100.0 35 .............................. TTANNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCT 1592616 30 100.0 34 .............................. GTNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATA 1592552 30 100.0 35 .............................. TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT 1592487 30 100.0 35 .............................. TCATTNNNNNNNNNNNNNNNNNNNNNNNNNNATCG 1592422 30 100.0 35 .............................. AAAGGAATGTAATTTAAGTTCTAGAAGTGCAGCAC 1592357 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 99.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGATTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAAACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTGGTTGAACAATAACAAGAGTTGTATTTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : TATACATTAAAAAACCTTAGCCATGTCGTTTAAACCCATGATTATTCTGTCTTAATATCTTATTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTCATAAAAAATTGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //