Array 1 19505-18215 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANRY01000020.1 Neisseria meningitidis 65014 NM65014.contig.19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19504 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 19438 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 19372 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 19306 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 19240 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 19174 36 100.0 30 .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 19108 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 19042 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 18976 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 18910 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 18844 36 100.0 30 .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 18778 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 18712 36 100.0 30 .................................... GGGTAGCCAGTGCTAAAACCGCACCCGCTT 18646 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 18580 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 18514 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 18448 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 18382 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 18316 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 18250 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //