Array 1 70503-71850 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIFT01000008.1 Pseudomonas aeruginosa strain KOL14.W.495.27 Scaffold_82_length_82830_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70503 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGTGGCGT 70563 28 100.0 32 ............................ GCCCGGTCAACTGGCAGCCACTTGTTCGGGCG 70623 28 100.0 32 ............................ GATCAGGGTCATGAGAGACACCGCTAAAGTAA 70683 28 100.0 32 ............................ GACGAATCCGGGCGATGGTGGCGGCGATGGTG 70743 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 70803 28 100.0 32 ............................ TTTGAGGGTATGACCATGAAGCGAATCGACGA 70863 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 70923 28 100.0 32 ............................ TTCCTCGAACACGCCATCAGCAGCCTGGAGGT 70983 28 100.0 32 ............................ ATCGCCGGCGCCGAGCGCGAGACCGTCTACGG 71043 28 100.0 32 ............................ ATCAGCGGATCGGCGCCCATACGCTGCGCCAT 71103 28 100.0 32 ............................ TCGCTGACGATGACCGGCGGCGCCTCCGGCTC 71163 28 100.0 32 ............................ GCTGATCGCCAAGCGCGACAAGTCGACCGGCC 71223 28 100.0 32 ............................ TCGGGGTGGCGGGCCAGGTTCAACGCCAAAGC 71283 28 100.0 32 ............................ ATACTTACCAGTCGCTCCAGGCCCTTCTTTTC 71343 28 100.0 32 ............................ TGGTCACTTGGCGGCCTGCTGGCGCTTCAAGT 71403 28 100.0 32 ............................ ATGAACAGCGACACGGCGGCAAGGTAGTGGGC 71463 28 100.0 32 ............................ ATATCGTGCCTGTCTTGCAGTCCTATCACCCC 71523 28 100.0 32 ............................ TCGAACATCGGCGAGAGAACGTCTGGCTCACA 71583 28 100.0 32 ............................ TGCAGGCCGCCGTCGAGCAATCCGCCGAGACG 71643 28 100.0 32 ............................ TGTCGTTGTTATCGCTGTCCTGCCATTCGTCC 71703 28 100.0 32 ............................ TGGACATCCTCACCGACCTGATCGCGCAGCAG 71763 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 71823 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAAGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 81788-80379 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIFT01000008.1 Pseudomonas aeruginosa strain KOL14.W.495.27 Scaffold_82_length_82830_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81787 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 81727 28 100.0 32 ............................ GAACAAATGCGGCAGTGGCTCCTCGATCTCCG 81667 28 100.0 32 ............................ ACCAGTTCCACCGCCATCACCACCAGGGTCTT 81607 28 100.0 32 ............................ CTTCAACCTCGCGGCATCCGCAACAACAACCC 81547 28 100.0 32 ............................ TGGAATGACCGGCCCGTCGTTGAACAGCACGC 81487 28 100.0 32 ............................ AGTACTTCGCAGCGAGTAATTGCAGAACCCCT 81427 28 100.0 32 ............................ TGGTGCTGATGGAGCATCACGACCGGCCGAGC 81367 28 100.0 32 ............................ ATCCAGTAAGCCCGCTCGCCCTGGCGCTGGGT 81307 28 100.0 32 ............................ ACTCCTCAGGCGTATCGAACTCGACCCACTTC 81247 28 100.0 32 ............................ CTCACCTGCTGGCGAAGCTGGATCGACCGGTA 81187 28 100.0 32 ............................ GGCACGACGTGCGTCAAGACGCCGACTGACCC 81127 28 100.0 32 ............................ GGCATAAGTCGGTGGCATCCGCGTGTCGTCGA 81067 28 100.0 32 ............................ GCATGCAGGTGCGAAGAAACACCGATTTCACT 81007 28 100.0 32 ............................ ATGTGGTCGGCGTAGCTCCAGGGGCGATGGGC 80947 28 100.0 32 ............................ TGCATCTTCACGGTGACGGTTCGACCGTCCTC 80887 28 100.0 33 ............................ ATGGCGGCTCCTGTCGATGATAAGCGCCTGCAT 80826 28 100.0 32 ............................ TTGGCAAAGCTGCTGCTGAACTATCGAAAGGT 80766 28 100.0 32 ............................ AGTTAGAGCCGGCAGTCGGCCTGCTGTTCGTT 80706 28 100.0 32 ............................ AACCGGTCGCAAATGACTGCAAGGGCTGCTTC 80646 28 100.0 32 ............................ TGCGCCAGGTGCTCCACCAACGCGAGGGGGCT 80586 28 100.0 32 ............................ ATGCACAGCGCGTCGATCCGCGGCAGCTTCAC 80526 28 100.0 32 ............................ TTTCCTCGGTGATGCCCCGGCGAACCGGGGCG 80466 28 100.0 32 ............................ TGCGCGCCGAGGGCGAAGACCTCGAGCAGAGC 80406 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGTTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGGAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTTCTACCCAACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //