Array 1 942656-944087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061050.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BBS1358sml chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942656 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 942717 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 942778 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 942839 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 942900 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 942961 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 943022 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 943083 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 943144 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 943205 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 943266 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 943327 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 943388 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943449 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 943510 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943572 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943633 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943694 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943755 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943816 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 943877 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 943938 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 943999 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 944060 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960220-961208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061050.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BBS1358sml chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 960220 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 960281 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 960343 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 960404 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 960465 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 960526 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 960587 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 960648 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 960709 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 960770 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 960831 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 960893 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 960996 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 961057 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 961118 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 961179 29 100.0 0 ............................. | A [961206] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.8 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //