Array 1 102921-100388 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOE01000023.1 Corynebacterium diphtheriae strain ST395-KZN-2015-45237 45237_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102920 29 96.6 32 ............................G TTTACCGCCGGTATTCGTGCAACGATTGCCGC 102859 29 96.6 32 ............................G CTGGCTTTGCTCAGCTTCAGTGGGGCAAGGGG 102798 29 96.6 32 ............................G GTGAATCTGATCGGCACTGTGACGGCCCCGTA 102737 29 100.0 32 ............................. ACTCTTCTTACATTGTCGGGGCATCAGTGCTG 102676 29 100.0 32 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGGT 102615 29 100.0 32 ............................. CGCGGCGAACACTCATTACCGCGTGGGCCTTT 102554 29 96.6 32 ............................T GTCAAGCGTGCGGTCTGAATTTCAGCCATCTT 102493 29 100.0 32 ............................. ACCACAGGTGGGACACGGCGCAGGCTCACGGA 102432 29 96.6 32 ............................G GCGATGGAGGAGTGCTGGGAGTTGAGGTCGAA 102371 29 100.0 32 ............................. CGACCTCCAGCGAAACTCTTGGGATGCCACAT 102310 29 100.0 32 ............................. GCTTTTAAGGGGAGCGTTGACCAGCTGTGTGA 102249 29 96.6 32 ............................G CAGGCTATCGCGGCGAACTCGACTGCGAATGC 102188 29 100.0 32 ............................. CAACTGACCGCCACCAAAAAATGCGACACTCC 102127 29 100.0 32 ............................. CCTGTGGGGTCGCCCGCTGAAACGTACCCGGG 102066 29 100.0 32 ............................. GGCATGGGAACTGCGATCTTCGGTGATGACCA 102005 29 100.0 32 ............................. CGCTGATACCACTCACGCTCCAAAGGCCCCAT 101944 29 100.0 32 ............................. GTCGGCGAGGGCACCAGATACCAATGTCAAGC 101883 29 100.0 32 ............................. CCGATCTTCGCGGCAGCCGCCCCACATATTTT 101822 29 100.0 32 ............................. GGTTTGCCGATTAGGACGCGTAGCTTGGGTCG 101761 29 96.6 32 ............................G TTGTCGAAGCGCGCCTCCGATGGTGTGCAGGC 101700 29 96.6 32 ............................T CATGGGTGTTTCAAGATCAACGGTTAACCGAA 101639 29 100.0 32 ............................. CTCACCCACCTGCACAAAGTCGCCTAGATTTA 101578 29 96.6 32 ............................T TGTTCAATTTCGCGGCGGTCAAACAGGTTTGC 101517 29 96.6 32 ............................G CTTGAAAAGATAAATCGAAAAATAATGGACCT 101456 29 96.6 32 ............................G GAGATCATTGATCTGTGCTTCCAGTGCGACGA 101395 29 100.0 32 ............................. AAGCAACTATCCGACCTGTGGGGGCTACAAGG 101334 29 96.6 32 ............................G TCTTCATATGGATCGGGGCGGTGTTCCTCTGG 101273 29 96.6 32 ............................T CACCGCCTTTTCTGGGTCGAAGCTGTAGGAAT 101212 29 100.0 33 ............................. CCCCCTCATGTAGAAAAGGGATTCGTCGATTTT 101150 29 100.0 32 ............................. CTGCAAGAAAACAGAGAAGGCGTTCATCTCCA 101089 29 96.6 32 ............................G TCCACCTCTTGCACCAGCGCCTCCCTGACGAT 101028 29 96.6 32 ............................G GACACGGGCAACGGTGGTGGTTTCAAAAAGGG 100967 29 100.0 32 ............................. ATCCTCATGGATCAGGCTAGTCATTGGGTTCT 100906 29 100.0 32 ............................. CTGGACGCGCATGGCCCTGAACCTCGCCATCG 100845 29 96.6 32 ............................G TCCAGGGCTTGAGTGCGTGCGTCTTTCATCGC 100784 29 100.0 32 ............................. CCCCTCATGTAGAAAAGGGATTCGTCGATTTT 100723 29 100.0 32 ............................. GCCGCAGTAATTACCGCACAAATCGCCGACAC 100662 29 96.6 32 ............................G CACCAGTAGGAAGTATTGTGTGCAAGCGGACA 100601 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 100539 29 96.6 32 ............................G TTCGGGATAGTGACATCGCCGACAACATGCGC 100478 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 100416 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 98.4 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63699-62325 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOE01000044.1 Corynebacterium diphtheriae strain ST395-KZN-2015-45237 45237_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63698 29 100.0 32 ............................. ATTTCCCATGCCGGTTCTTCGCCGGCGTCGTA 63637 29 100.0 32 ............................. TCCACCGAGTGCTTTTCATGCTGGTCAAACCA 63576 29 100.0 32 ............................. GTGTGGATGGTTCCGCACGTGTCAAGTCCGCG 63515 29 100.0 32 ............................. TGTCCCGTTGAAGTTGGTGAGTTGCCTGCGGA 63454 29 100.0 32 ............................. TGGCGCAATCTAGGAACCGCAATCGAACGGGC 63393 29 100.0 33 ............................. TTTGTAAGGACGCGTACTCGCTTTCCACGAAAG 63331 29 100.0 33 ............................. TGCACCAGGCTCTCATATCGGAGGCAGAAGCAA 63269 29 100.0 32 ............................. ACCCGTAGGGGGTTTCGGGGGATTTTTTTTAG 63208 29 100.0 32 ............................. TGAAGCAGTCGCAGAATGGGGGGAAGAGCTAC 63147 29 100.0 32 ............................. GCCACACCATGCTGTTCCTTGAGCACTTAGCA 63086 29 100.0 33 ............................. TAGGTTGTCGGTGTCGCGGCGTCGGTTATCGCG 63024 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 62963 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 62902 29 100.0 32 ............................. TTCCAGTTGGCGTTCCGTAGGGTTGGCGCATG 62841 29 100.0 32 ............................. AAAGGGCGCTATCACACCTTCTATGGTGACGC 62780 29 100.0 32 ............................. ATGTCTTCACACGCTATTCGCAGTGGGTGGGG 62719 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 62658 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 62597 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 62536 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 62475 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 62414 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 62353 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : GGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //