Array 1 954-2481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTXJ01000060.1 Pseudomonas aeruginosa strain AZPAE14695 AZPAE14695_contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 954 28 100.0 32 ............................ ATGCACGAACGGATGCAGTCCCGCAGCGCAGA 1014 28 100.0 32 ............................ TGAGTGGCTTGCAGAGGTCGACAGCAAAGAGT 1074 28 100.0 32 ............................ AGTTGAATGCCGAGGGCGAGTTCGTCGAATTC 1134 28 100.0 32 ............................ ATCCGAAGGCGCCGGCAGTATGACACCCGCCA 1194 28 100.0 32 ............................ TGTACGCGACCCTTGGGAAGTACTCAAGGATC 1254 28 100.0 32 ............................ AGCTGATGCAGCATCGGCAGGTCCAACCCACC 1314 28 100.0 32 ............................ ATCCTCGCCCTGCTGGACGAGATCGACCAGCT 1374 28 100.0 32 ............................ CGGTCCTGCCAGTACTGCGGCAGGATCTGGTC 1434 28 100.0 32 ............................ AGCCTGGCGCCCTTCGAGTCCATCCAGCCCGG 1494 28 100.0 32 ............................ CATCCAATTCGCCGATCCGGCGCAAGCGCCCG 1554 28 100.0 32 ............................ ACGAAGCAGATCGCCGAATGCGGCGTCAGCGC 1614 28 100.0 32 ............................ GTGGGTGCAAATCGCGATTCTGGTCGCGTCGT 1674 28 100.0 32 ............................ TGAATATCAGCCTGCAAAGCGTCGTCGTAGTA 1734 28 100.0 32 ............................ AAGCCGGGCCGATGTTCGAGCCTGGCTGCGTG 1794 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 1854 28 100.0 32 ............................ ATGCGAGGCTGATCGAGGTGCGCGGTTCTGTT 1914 28 100.0 32 ............................ GTGCGCGGATGGCTGGTATCTCGAGCACGATT 1974 28 100.0 32 ............................ AGGCAAACAACGGAAAGATCACCACCGAAGGC 2034 28 100.0 32 ............................ AACGAAACAGGCCCAGCACAGCCGCTTGATAA 2094 28 100.0 32 ............................ ACAAGACGCTCATCGACGGCAGCATCGAGACG 2154 28 100.0 32 ............................ AAGGTGACGATGCACAGCTGTTGCGCGCGGTT 2214 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 2274 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 2334 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 2394 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 2454 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCAAAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12600-11005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTXJ01000060.1 Pseudomonas aeruginosa strain AZPAE14695 AZPAE14695_contig_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12599 28 100.0 32 ............................ AGCGGATTACGACGAAGCCTTTGGCTGTGGCC 12539 28 100.0 32 ............................ GCTGGAGAACAGCGTAAATATCGACTGGAAGA 12479 28 100.0 32 ............................ AAGTGGCTGAACTCCGCCTCGGATTGGAGCGA 12419 28 100.0 32 ............................ ATGCAAGGCGCCAGTCTTTCCAGCAATCGCCA 12359 28 100.0 32 ............................ AGGCGCTGGGCTTCGGCATACTGCTCCGCGGC 12299 28 100.0 32 ............................ CACCGGGGTGGAAGTCATCGGCAACTCTATCC 12239 28 100.0 32 ............................ GCGAACTCCGAGACTGATGCGACGCGCCTCAG 12179 28 100.0 32 ............................ ACACATCACTGTTCTGCGGTACGTCGTGCCAT 12119 28 100.0 32 ............................ ATTGCAACGGCCCAATTAAGCGCTGCCCCCTC 12059 28 100.0 32 ............................ ATCCGGAGCCGGCGGCGAAGACTCCGCATTCC 11999 28 100.0 32 ............................ TCGATCTGGCTGATTGGCTGGGGCGAGAACAC 11939 28 100.0 33 ............................ CTGAACCTGTCGAAGCCTTGCCTAGGCACCACG 11878 28 100.0 32 ............................ AAGCAGATCCACGACTTCGTGAACGAGTGTGG 11818 28 100.0 32 ............................ ATCACCGGCGCGCTGGCCTTCGGCGCCCAGGC 11758 28 100.0 32 ............................ TTATCAGTAAATACGTGGCGACTTGGCCACCC 11698 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 11638 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 11578 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 11518 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 11458 28 100.0 32 ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 11398 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 11338 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 11278 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 11218 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 11158 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 11098 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [11074] 11032 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //