Array 1 420689-420987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006803.1 Lactobacillus gasseri DSM 14869 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 420689 36 100.0 30 .................................... AAACCATCTCATCGTTGCTCATCATCCTAT 420755 36 100.0 30 .................................... CCAGAACTAGCACCACCGTACCAGACTTCT 420821 36 100.0 30 .................................... TGACTGTAGATGAAAATGTAGTTACTAGTG 420887 36 100.0 30 .................................... CTGGAAGACCATGAAAGCATTCCACACAAG 420953 35 91.7 0 ..........................A.....-..T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : AATCAAAATATTTTTGACAAGTATATGCCCGTAATTATAAAAGGATACATTGAAGGGCTTAATGAAGCGGATCGTAATGAAATATTAAAAACCTACCATAAACTAGAGGGGATAATTCAAGATTCACTTCTACTTGAAGATCTACCATTAGAACTTGAATTTAATGAAGACTTGAAGAAGTTCTTAAAGATAGAAAATCTACATTTAGATACTAAGTTTTTAGAAGAGCCATATGCTATAATTGAATCGATCTTAAAAATACATCAAAACTATAATCTTCATTCCATACCTGTTGCCTGTAATGTAGCTCATTACTTAAATCTAACCCAGTTAGGAATGTTAAATGATCTATTAAAAGAAATGAGGTTGAAATTGATTTTAATAGAATTCACATCTGCGGATTTTCTGGTTTTTCCAAAGGATGTTGATTATTTCTACATTGATCAAGATCTTGTTGATTGGTACTAACTATTTAATTAAAAACTGATTATAAAATTTCG # Right flank : TTGTAGTGAGTTACGTTAATTAGTCGTAATTACACTACTGGTCCATTGTTTTTCAATGGGCCTTTTTATTATATTCCGAACCGTTTTTCACCTCTTTAGTGAAAAAGTGTATTTTAAATGTAAGTGCTGTTTAATACCATATAAGTGTTAAGAAAAATAATATTAATGAAGAATTTAAAAACGACTAAGAATGTTTCATTGATATTGCATCATCAAATTTTATGGCTTCTAACATGAGAAAAGCAGCAAAGAGGACTGGATTAGATTATAAAATTCAAGCTCGAGGTGGAGTAAAATTAGGTGACAATGTAAATCAAATTAATGCCTTGATGGTGGGTCCTCACTTAAAGTCAGAATTTGATGCTATTAAGACACAGGTTCCTGATAAAATAAAAGTAATTTTAATTAAACCAAATTACTATTCAATTTCTATTTGATTTTATGGATTATATGAAATTAGATAAGCAAAAGATCATCGCAGATCTTTTCCTCAGGGCGCG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 422660-422204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006803.1 Lactobacillus gasseri DSM 14869 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 422659 29 89.7 32 ..G....T......A.............. AAGTTAGTCATTGATTTTACAGCAGGGGCTTA 422598 29 86.2 32 ..G.....T....G..............C TGGTCCTACACAGCAAATGGCGTTCACAATGA 422537 29 96.6 32 .....................G....... AGTCCTAAAATGGAGCTTCAGCAGATGCTTGA 422476 29 96.6 32 .......................A..... GGTAACCCATATTTCTTTCGACTAGATATCGC 422415 29 100.0 32 ............................. TAGAATATGCCATTAATTCAGGTACAACACTA 422354 29 96.6 32 ............................C GCTATTGCAACCTATGAAGGCGAAATGCTTAA 422293 29 96.6 32 ..........T.................. GTAGCAGCAGAAGTTGAGGGAGCCATTTCAAA 422232 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.3 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : GCGTAAGAGCTAAACTTGCATGTTCAGGATCGCGTCCTGTTGCAAAAGCATTTGGATCTGGATCAGGAGTAATATAAATTTTAGGAACAGGCAACCCCCCCCTGCTAAACAGAGTTCTTCAACAAGCTCATATATTTCAGGATCACTTTCTTTAGTGATTTCAACCGCATTCGTAACTTTCATTAAATGTTGAGTTGCATCAAAGTAAACGTGCGAAATATAAATTAATCCGATAATAAAAAATCCAATTCCTACATATGAAGTAAAAATCATTCCAAGAAAAATACTTAATACCAGTATTAAAACTGTATACAATCCCAAAATAATCCATGTATTTCTCTTATTTTGTTCTATTTGTTTATATAGCATTTTTCACTCCAACTATTTATGCTAAAAGTCTATGAACTAATTATACAAAATTTTCAATTGATAATACCTAAAATGACAAAAAATGCTATTATTTGAATTAAGGATGACTGATAAATCACGGATCTTTTAGT # Right flank : TCATTCAAAACAGTATATTTTTCATAAATAAAAGTGTTCTCCACGCATGTGGCATGTGGAGGTATTAAAAAGGTCTGTTATCATCAAGTAACAGACCTTTTTCTTATTTAAAATATTCTAATTTGCCAAGTAAACTTTGATTATCAACTCCAAGTTTTTACCATCCCAATGGAAGTTTTTTACTCGACCAAATAAAAGATTACCGGAATCAATCAAACGACTAAAAATCAAATTATGTTCACATGGAATATAACCTAATTTTAGCCCAGCCGGTGTAGCTACAGAAATAGCATTTTTGTCGTACTTATTATCAGCCTCACGTATTAATAGAACGGGATCATTCTCTTTTAGACGAGGAACTACCTTATCTTCAAGATGTAAATAATCAGAACCACGCACTTCACAACCATATAAAAATGTGCTGTGACTTTCTCCTGATTGTTTATAATAGATTTTTTTCAAATCAGTAACCTGATTTTCTAACTTATCAATTCTATCCA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 434451-436004 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006803.1 Lactobacillus gasseri DSM 14869 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 434451 29 100.0 32 ............................. ACCGTATTCCCAATTAGCATAGGTTGAAAGTC 434512 29 100.0 32 ............................. ATTGTCGAACCCTTACGAATACCTAGGTTAGC 434573 29 100.0 32 ............................. AAAGTTTGCTCCCCAAAGTCTGGAATGTATTC 434634 29 100.0 32 ............................. AACTGGAAGAAGATTGAAGAAACTATCAATCA 434695 29 100.0 32 ............................. TAATTCAGACATTACGGAGGAATAGAAAATGG 434756 29 100.0 32 ............................. AGCGATGGAGGTGCTTTCAATGAGTGCATTTA 434817 29 96.6 32 ............................C GTTTTGTTTAATTAACTTACATAATTATAATA 434878 29 100.0 32 ............................. TGCTACACCAAGCATTTCAGCACCATCTTGTA 434939 29 100.0 32 ............................. TGCTTTAGAAATCCATTGAATCGCTTCTTTAT 435000 29 100.0 32 ............................. TCTCCTTTCTACCCTGTATCGTTTTCCTCCTT 435061 29 96.6 32 ............................C ACTGCTAAGGCTCGAAATTTAGCTGATGTGAA 435122 29 100.0 32 ............................. TCCTCTCTCAATTTTTCATTCTCTTCTTGTAG 435183 29 100.0 32 ............................. TATTGAGAGGTGAAAACATGGAAAAAAGTAAA 435244 29 100.0 33 ............................. GAAGCTACCGCCGTCTTGGCTGCCACCAAAGAG 435306 29 100.0 32 ............................. GGAATAATAAGAATCAAATCGAATCAAATAGA 435367 29 100.0 32 ............................. AGAATCAAATAGAATCATAAGAATTATTAATA 435428 29 100.0 32 ............................. AAAAATCATGGATTTATCAGAATTAGAAAAGG 435489 29 100.0 32 ............................. GGCATCAGGGGCACAAATCCAAACCTATAAGA 435550 29 96.6 32 ............................C AAGACTCAATCTGAAGAAGTAAAAGATGAAGT 435611 29 100.0 32 ............................. AAGCCAGTTCGAAGGGCTACTAACTGGGATAA 435672 29 100.0 32 ............................. TAATGCCCATTCCTTGGGATAAACCATTTCCG 435733 29 100.0 32 ............................. TGCCTGAATTTGATCGTTTTAAGGTTGGAGAT 435794 29 96.6 32 ............................C ATAAATTCATGGATAAATTTACCATGATTCTT 435855 29 100.0 32 ............................. GAAAAAGAAGCCTGACGATGAAAAACAATTTG 435916 29 100.0 32 ............................. TAACCAACTTTTGCGTCGAAATATCCAAACAA 435977 27 93.1 0 .....................--...... | C [436002] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AGCTGTCAAGTATATTAAGAAAAATGATCCAGAAGTTTTTTATAGATTGATAAAAGATATCCCAGAAGTTCCGGAGCATATTTCTAAATTAACAGGGTTGACAACTAAAAAATTACGAGATAGTGGTGTATCTTTAAGAGATGCACTAATTGAATTTAAAAAATTTGTTGGATCTCGACTAATAGTAGGCTATAATTTACCTTTTGATATGAGCTTTTTGGAAAATAGTATTAAGAAAGAAAGTTTAAATTCTCTGGAAAACAGAGCAAAGGACATTTTACCTATTGTGAAGCGGAAAAATAAATTCTTAGAAGATTATCATCTAGATACTGTACTGAAAAAATATGATATTGAAAACGAGAATCCACATCACGCAGACTCTGATGCAAAGAGTACTTGGTATTTAACAAAGAAATTGATAGAAATTAAAAGTTTGATAATTTAAATGAAATTGGCAAATTTTAGTAAATAAAATGCTGATTTGACGGGATTTTTTTAGT # Right flank : TGATAGACAAATATATCAGCTTTTAGGCTAAAGTAAGAATTTTGTAGGTATAAAAAAATGAAAGTTAGATATGCTGGTGAAAGTTTTTATAGTGGGTTAGGTTTGGCAAATGGCAAGGTATATGTAGTTTTAGATAAAAAAGGACCTTTTTATAGAATAATCGATGATAGTGGAGAAGATTATTTGTATTCGAAGACTAATCCTGCTCCACTAGATGGTAATTCAAAAGGTGGGTATTGGAATATAGTTGAGTATTGAAAGAGCATAATAAAAACGCACTCATAAGCCTAATTTAAGCCTATCAGTGCGTTATTTTGTGTAATTCTAAATATTCTTAACAAATTCAGCGATTCTCTTTAATGCTTCTTTTAATTGCTCAGTTGAAGAAGCGTATGACATTCTTACGTAGCCTTGGCCACCTTGACCGAAGTAGCGACCAGGAGTTACACCAACTTTTGCCTTGGTAGCTAATTCATTTGCAAATGCTTCATCATCAGTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //