Array 1 19557-19919 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NIQE01000012.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1499c x_contig000012, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	===============================	======================================	==================
     19557	    31	 100.0	    35	...............................	AGAGACAGCAAACAAAAGGCTAGGATTTAGCTCAG   	
     19623	    31	 100.0	    36	...............................	GCGCTTTAAGCAATGCAAAATTAAAAAGCTATGGAT  	
     19690	    31	 100.0	    35	...............................	AAAGCTTCGAGCAAATAGAGCAGTATAATAAAGAA   	
     19756	    31	  96.8	    38	T..............................	GTGTTAGGGTCATTCGCAAAGCCCAAATCTGCCCCAAA	
     19825	    31	 100.0	    33	...............................	CCCAACCGCTCACATTTTTTAATGAATTACCTA     	
     19889	    31	  96.8	     0	C..............................	|                                     	
==========	======	======	======	===============================	======================================	==================
         6	    31	  98.9	    36	AGTTTCAAATCCTAAAAGGATAAATTTATAC	                                      	       

# Left flank :   TGAGCTATTAGCTCAAGTATAGTTTTATAAATGCTCTCCATATGGTTATTATAATATAAAAAAGGTAAGCTCTAAATCCTAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTGCCAGTGTAAGGCTTTGAACAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAACCAAAACCATAATAATAAAACTAAACATTTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATTAACAAAACAGCAACCACCCTAAGCGATACCCTAGATAAAAACATAAAAACAGCACTAACAGCGATAAAAAACGCAAATCACAAAA
# Right flank :  CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTAGTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTGGGCAAAAGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGTTAAACGCTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTTATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGCTAAATGCAGTTTTATCACCCCTTGTCTGAGCAG

# Questionable array : NO	 Score: 3.21
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AGTTTCAAATCCTAAAAGGATAAATTTATAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:77.42%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-3.50,-3.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0   Confidence: HIGH] 

# Array family : NA
//