Array 1 127-287 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYV01000060.1 Clostridium roseum strain DSM 7320 CROST_contig000060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 127 28 100.0 39 ............................ CAATTTAGGTATATTACCATATACTTTTATAAATTGTTG 194 28 100.0 38 ............................ TCTTTAGCTACTACATCATTTACAGCATTAAAATGTTG 260 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 3 28 100.0 39 AACATTAACATAGGATGTATTTAAATTT # Left flank : TGGATAAATATCTGTTTTTATAATCATAATTACCCCCAAATAAATCTTGAATAATTATAATTTATAAAAACTAAATTGTACATTCTTATATGATCATTTTCTTACATTCTCATAGTATCATTTATAA # Right flank : TATTTCCCCTGCTGAAAAAGTTGTTTGATGTGATAGGTTGAACATTAACATAATCCTACGCGGGGTTTGGGCGATAGCCCATTATCCTTCTAGAACCCAGAAAAATCACTTTCTCAAAAAATAATATAAATTAAGAAAAGGCAAAATCTAATACGCGGGGTTTGGGCGATAGCCCATTATCCTTCTAGAACCCAGAAAAATCACTTTCTCAAAAAATAATATAAATTAAGAAAAGGCAAAATCTAATACGCGGGGTTTGGGCGATAGCCCATTATCCTTCTAGAACCCAGAAAAATCACTTTCTCAAAAAATAATATAAATTAAGAAAAGGCAAAATCTAATACACGGGTTTGGGCGACAGCCCATTATCCGTCTAAACTTCTACGAGGTTTGGACGGAGTCCATTATCCTTCTTTAACTGTGATTAACCGTTTCTAAATTTACTAATTTAGTCAATAAATTTTAAAAACTACATATAAAAAGTATCCATGTATATGAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACATTAACATAGGATGTATTTAAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 3913-5324 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYV01000060.1 Clostridium roseum strain DSM 7320 CROST_contig000060, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3913 30 100.0 34 .............................. CCTCAAAAGTACGCGGATCAAAGACACAATATAC 3977 30 100.0 35 .............................. CCACGTGTAGCTATGCTACAATCTATACTAAACGT 4042 30 100.0 36 .............................. ACGATTATCACTTATTAAGTATGTATAAATATTCAC 4108 30 100.0 36 .............................. TCGCCCCTTAATATCTTTTTACAATATCTATACATC 4174 30 100.0 36 .............................. GCAGTAAAAAGCACTCCTTTTTTACCTGTCATTTTA 4240 30 100.0 36 .............................. TAAAACAAACTTTCTTCTAATGACATTGAACGAAAT 4306 30 100.0 36 .............................. TTGATGCTTCATGCAGTCGATATATTGACCACCAAC 4372 30 100.0 38 .............................. TTTAAATGTCTTTTACATGCCAGCTTTACAGTATCGCC 4440 30 100.0 36 .............................. AGATTTACAAAATAGTTAAAAAAGTTTACTATTATG 4506 30 100.0 35 .............................. CTATTGGGCTTGTTATGGTTACTAATAGCAAACTT 4571 30 100.0 37 .............................. AAACTGCCGAGTAATCATTTTGTAATTTCATAATTAG 4638 30 100.0 35 .............................. AATATCCTTTGTAATGATGGGCTTACTGTTTTATA 4703 30 100.0 36 .............................. TACTAGGTATATATTCAGGACTTAGGGTTTCTGACA 4769 30 100.0 35 .............................. TAAGGTATCTTTTGAATATCTATACCCTTTTCTTC 4834 30 100.0 36 .............................. TAACAGAAAACAATACTTATATTGTTCTTACTGTCC 4900 30 100.0 36 .............................. TCACTCATATTATAGCTTTTAGCTACATCGCTGTTT 4966 30 100.0 35 .............................. TGCTCATGTAATTTATTAATTTCTTCTACCTGTTT 5031 30 100.0 34 .............................. ATTTTATATTGTTGCTTGGTTATACCGTTTAATA 5095 30 100.0 37 .............................. AATTATGCTCTATTAAATTATTCTGAATTAATGAACC 5162 30 100.0 37 .............................. TTCCAAACAATTGGCAATATGCTTCGAATTTTAATTG 5229 30 100.0 36 .............................. ATATAAAGCCGAATGGGGCGTTGTAGAAAAAATAAA 5295 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 100.0 36 GTTGAACTTTAACATAAGATGTATTTAAAT # Left flank : ATGCAAATCCAATAAATAAAAGATAGAAAACTCCATCGAATTTTTCCAACCTCGCAAGAAAATAAAAACACCTCAAAGCTTTGAAACTCAAAGACTAGAGGCTATTTTTTTATCCATTTTTACAAAATCACAAAGTGGCTGGAAAAATTTTAAGGAAAGCCTTTATTAATGCGGTGTAGAGGAGTAATCCTACGAGGTGTTTGGGCGAAGCCCATTATCCTTCTAGAACCAGGAGCAACTGTTTCTAAATTTACTAGTTTTCCTAATAAGTTTCTAAACCTCATACAAACCCAACCAATAAAAGATAGAAAACGCCATCTAATTTTTCCAGCCTCACAAAAAATAAAAAGTACCACAAAGCCTTGAAACCAAAAGCCTAGGGGCTATTTTTTTATTCATTTTTACAAAATCGCAAAGCAGCTGGAAAAATTTCAAAGAAAGCCTTTAATAATGCGGATTAGAAGAGTATAATGAAAATAAAGAATGGCTTAAAACCAGTG # Right flank : TAATGAGATTCCAAGTGCATCTGCAATTTTAACAAGTGGTTGAACATTAACATAATCCTACGCGGGGTTTGGGCGAAAGCCCATTATCCTTCTAGAACCCAGAAAAATCACTTTCTGAAAAAATAATAGAAAGTAAGAAAAAGACAAAATCCAATACGTGGGGTTTGGGCGGAGCCCAGTATCCTTCTAAACTTCTACGAGGTTTGGACGAAGTCCAGTATCCTTCTTTAACCGTGATTAAACGTTTCTAAATTCACCAATTTACTCAATAAGTTTTAAAAACTACATATAAAGTGTATCCATATATATGAAATAGTTGAACATTAACATACACATATAGAGGTTTGGGCGAAGCCCATTATCCTTCTAGAACCAGGAGCAACTGTTTCTAAATTTACTAGTTTTCCTAATAAGTTTCTAAACCTCATACAAACCACACCAATAAAAGATAGAAAACTCCATCGGATTTTTCCAACCGCACAAAAAAATAAAAGTACCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 5968-8091 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYV01000060.1 Clostridium roseum strain DSM 7320 CROST_contig000060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5968 30 100.0 36 .............................. ATCACAAAATCTCTATTTTAAATATATAAGAAAACA 6034 30 100.0 36 .............................. AGATGATTCCAATAACTTGATAAGAATCTATATTTC 6100 30 100.0 37 .............................. CGCTCATTTAATCCCCAAAACTCGTCAAATTCATTAT 6167 30 100.0 36 .............................. CTAGCTTTTGAGTCTAATATATTTTTGTATATAGCT 6233 30 100.0 35 .............................. TTTATTAAGGAGGGTTATAGTTTTTGATATATATT 6298 30 100.0 34 .............................. CAATACTTTTGGTCTAATGGTATCATCACTTCAT 6362 30 100.0 36 .............................. TATAACCTACACCAATCCATTCTGTTTTGCTTCTGC 6428 30 100.0 34 .............................. AAGTTACTATTAACTATATATTTACTTAAATCAT 6492 30 100.0 34 .............................. TGCATCCCCTACAGCTTGTATCTATTGCTAACTC 6556 30 100.0 35 .............................. TTAGATATGTGATTTTCCATAAGTGCTATGCTTAA 6621 30 100.0 35 .............................. AATCAATTTTTCTATTTTTATGTGGTCCATTATTC 6686 30 100.0 36 .............................. CTACTTATTGACAATGAGCCTTTACAAATGCTATAC 6752 30 100.0 36 .............................. GATGTCTTTTACATGCTAATTTTGCGCTATCACCCG 6818 30 100.0 35 .............................. TGGTAAAGTTCTTCTAAGACACCATATCTTTCATT 6883 30 100.0 36 .............................. TTTGATAGGGCTATAAGCATGTCTCTTGATGCTTTA 6949 30 100.0 36 .............................. TAGCCTATTCTATCTTTAAATAGTTCACTTTTCATT 7015 30 100.0 37 .............................. TCATTTATATAAGCTACAGGTAACTTGTTGTATTCTT 7082 30 100.0 36 .............................. ATCTCCTTATCCTTCTCAAAGTTATTATTTCTCCAA 7148 30 100.0 36 .............................. ATATACTTCTAAAGCATTATTAAGATATTTAAATAA 7214 30 100.0 36 .............................. AAAGAAATTCGGAAGATATTGAAAAAATATCATAAT 7280 30 100.0 36 .............................. GGACTAATATGCATGTAGTAGAAAAAGATGGAGTGA 7346 30 100.0 37 .............................. GATACTTTTATTAAATTTTCCATTCTTCTTCCTCCTA 7413 30 100.0 34 .............................. TATAATGATTTATACATATAGCATGAAAAGGCTC 7477 30 100.0 35 .............................. TGGCAAGAGATTAATTATAAGGGGGTGACTTAATT 7542 30 100.0 34 .............................. TCATAATCATCACAAATTTGTGTTTCTTCTTCAC 7606 30 100.0 35 .............................. AAAACTCAACAGCGAATTTGAGTGCAAATATAAGA 7671 30 100.0 34 .............................. AATAGAACAAAGAGAGTGATATTATGAAATATTA 7735 30 100.0 36 .............................. CTATCTTTTTTTATTAAACCTATCTCTAACAACTGG 7801 30 100.0 36 .............................. TCAGCTTGTACTAATATATCTGCTATATCTTTTTCG 7867 30 100.0 34 .............................. AGTAATATAGTTGTACCATCTTTTGCTCTAATTA 7931 30 100.0 35 .............................. AAATTAAAATTAGTAGAGTAGGAGGCTGTTATGGA 7996 30 96.7 36 .......A...................... CCTTGTTTATCACACCCCCAACATCCAAATTTTTCG 8062 30 90.0 0 ....G..........A............T. | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.6 35 GTTGAACTTTAACATGAGATGTATTTAAAT # Left flank : CAAAATCCAATACGTGGGGTTTGGGCGGAGCCCAGTATCCTTCTAAACTTCTACGAGGTTTGGACGAAGTCCAGTATCCTTCTTTAACCGTGATTAAACGTTTCTAAATTCACCAATTTACTCAATAAGTTTTAAAAACTACATATAAAGTGTATCCATATATATGAAATAGTTGAACATTAACATACACATATAGAGGTTTGGGCGAAGCCCATTATCCTTCTAGAACCAGGAGCAACTGTTTCTAAATTTACTAGTTTTCCTAATAAGTTTCTAAACCTCATACAAACCACACCAATAAAAGATAGAAAACTCCATCGGATTTTTCCAACCGCACAAAAAAATAAAAGTACCTTAAAGCCTTGAAAATAAAAGTTTAGAGGCTATTTTTTTATCCATTTTTACAAAATTACAATATAGCTGGAAAAATTTTAAGGAAAGCCTTTAATAATGCGGTGTAGAAGAGTATAATGAAAATAAAGAATGGCTTAAAACCAGTG # Right flank : TAGTAAGTCAACATAAATTGTATTTTGTTGAACTGAGTTAATATATTATTTATCAGAGTTTATAATCTTTGATGATTTTTATTTCATATTAAAGTAAATATTGGTTATTACCTAAGTGCCATGTTATAATTAAATAATTATATACACAAGGAGGATACACATGAAAAAACGTTTGATAAAAGCTTATTGTATTGGTTTTTTAGTATTTATTATAGGTGCTCTTCTATCTGCTAATTTAGGACAATTATTTGATGGAGATTCATATGAAAATGCCCGTGCATTCATAATATCATTTGCAGTAATATTTTTGAGCAGTGTAGTTGCTATATCAACTTCCTTAATATTAGATGCAATTAAAGAAAATAAAAATTCTAAATAAAAGAATTACCAATATTATAAGATTCTAAACGTGTTGGTTCATAATTATCCACTGAATTCACTGAAATTGAAGTTCTAATAATTTGTAAACTCGGAAAAATCGAAATACTTATTTTTTTATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 601-2014 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYV01000110.1 Clostridium roseum strain DSM 7320 CROST_contig000110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 601 30 100.0 36 .............................. TAAAGGAGCTGTAAATTCTACAAATAAGCAGTACAA 667 30 100.0 38 .............................. TTTGGTATGCAGGTGCAAGGTATGGTTTTGCCGGTTGC 735 30 96.7 36 .................T............ TTATATAAGAATTATCATCATCCCCCACTAAGGCAT 801 30 100.0 36 .............................. AGCATCCAACCTTTATATACAGAAAAGATGAAAAGA 867 30 100.0 36 .............................. TTTTTATAATAAAGATAAAGACCACACTTATAGCGT 933 30 100.0 36 .............................. TTTATTTAAATTATTAATATATGCTTGTAATTGCTT 999 30 100.0 35 .............................. TCGCTTATTCCTGGTATTTTATCACAAATAACTTT 1064 30 100.0 36 .............................. AATCGACCTTTTATAAATCTAATTTCTTTTGCCTTA 1130 30 100.0 35 .............................. AAATAAGTTCTTTTACTGCGATTAAATCTGCCCCT 1195 30 100.0 36 .............................. GCAAAATTTAATACATTGTTTGCCTCTGCATTTTCC 1261 30 100.0 36 .............................. GATATTTCACTACTGGAACTTTGAGCAATTTTATTG 1327 30 100.0 34 .............................. TAGACATCAAGGTAACTCCAAATACACCTTCCGA 1391 30 100.0 38 .............................. CTTTTGCATGAGGTATTGTATAATGTGTTGCAACGCAA 1459 30 96.7 36 ..............T............... TACAAATTGAAATTGCAAGTCCTGCTTTAATTTAAT 1525 30 96.7 34 ..............T............... GACACTCAAGTAAGACCGCAGACAATAACAGATA 1589 30 96.7 36 ..............T............... TGGCAGGAATTTAAAGCATTGGGTTAAGAAAGCTTA 1655 30 96.7 37 ..............T............... AAATTCCTAAAATGTCCACTGATGGATTGGCAGATTA 1722 30 93.3 36 ..............T...........T... AAAAATACTTAAATATAATAGCTACTATATAGAACT 1788 30 96.7 35 ..............T............... CAGAAACACAATTTTAAATGGGAAGATAAGCCATT 1853 30 96.7 36 ..............T............... TATTAAGTGCGAAAATAGGTTAGGCTCTGATAATAA 1919 30 96.7 36 ..............T............... AGATTGTAGAAGTATAGTTATACCTAAAATATTATT 1985 30 96.7 0 ..............T............... | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 98.3 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : AGTTACATTTTTAAGTTGACATTTATACTCTTCTACACCGCATTATTAAAGGCTTTCCTTGAAATTTTTCCAGGCGTTTTGTCATTTTGTAAAAATGGATAAAAAAATAGCCTCTAGTCTTTTGGTTTCAAGGCTTTGAAGTGCTTTTTATTTTTTGTGAGGTTGGAAAAATTCGATGGAGTTTTCTATCTTCACTAGTATGGTTTTTTATAAGGGTTAGAAACTTATTGGAATATTAGTATATTGAGAAAGTGATTTTTCTCAGTTCATGATTCTAATGGGCTGACGCCCAAACCTCCATATGTGTATGTTATAGTTCAACCATTCCATATATATGGATACACTTTATATTTAGTTTTTAAACTTACTGAGTACATTAGTAAATTTAGAAACGGTTGCTCTTGGTTCTAGAATGATAATGGGCTTCGCCCAAACCCCTCGTAGGTTTATGTTAAAGTTCAACTTAATTCTTGGTTTTTAACTAGCATTTGTTTAAGCCT # Right flank : CTACTGGTTTTAAGCCATTCTTTATTTTCATTATACTCTTCTACACCGCATTATTAAAGGCTTTCCTTAAAATTTTTCCAGCTATATTGTAATTTTGTGAAAATGGATAAAAAATAGCCTCTAGACTTTTATTTTCAAGGTTTTAAGGTACTTTTATTTTTTTGTGCGGTTGGAAAAATCCGATGGAGTTTTCTATCTTTTATTGGTGTGGTTTTTATAAGGATTAAAAACTTATTGGCATATTAGTATATTGAGAAAGTGATTTTTCTCAGTTCATGATTCTAATGGGCTGACGCCCAAACCTCCATATGTGTATGTTATAGTTCAACCATTCCATATATATGGATACACTTTATATTTAGTTTTTAAACTTACTGAGTACATTAGTAAATTTAGAAACGGTTGCTCTTGGTTCTAGAAGGATAATGGGCTCCGCCCAAACCCCTCGTAGGTTTATGTTATAGTTCAACAAAAGAAATTTCAATACCAATTGCTAAACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : ATTTAAATACATCTTATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 36545-37165 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYV01000063.1 Clostridium roseum strain DSM 7320 CROST_contig000063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 36545 30 100.0 37 .............................. TTTTCCAATGCCTTTTTAGGGCTATCTCCATTATCTA 36612 30 100.0 36 .............................. GGGTAATTGAACCCATGATATAAATGAATTTACTGC 36678 30 100.0 34 .............................. TTATGGTTTTCGGTGAGCTACCTAAACCGAGAAA 36742 30 100.0 36 .............................. GTTGCTTGATTAACTATAAAGTTCCAAAACTTTTTT 36808 30 100.0 37 .............................. GAATACCATTAGTGCCTTGCAACAAGTAATATCGTCG 36875 30 100.0 35 .............................. ATAAAAACAAGGTTGAGCAAATACAATACATTATA 36940 30 100.0 35 .............................. TCAGCCTTTTTAATATAGCTATCTACTATTTTTCT 37005 30 100.0 35 .............................. AATACACTTCCACCTGGGGAATTAAGATGTAAATT 37070 30 100.0 36 .............................. ATTCCATATGCTTTGCCACAAGCTTGACAAAAGTGT 37136 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : GTAAGAAAAGACAAAATCTAATATAAGGGGTTTGGGCGAAGCCCATTATCCTTCTAGAACTGGGAGTAACTATCTCCAAGTGCATTAAATTCACCAATAGGTTTTAAAAGCACATATAAGATATTTATATATAAGTAGAAGAGGTTGAACATTAACATACACATATGGAGGTTTGGGCGTCAGCCCATTAGAATCATGAACCAAGAAAAATCACTTTCTAAAAAACAAATCAAAATTAATAAGGTGAGAAAACTAATATGCTTAATAAGTTTTAAAAACATATACAAAAACTCACCCCAAAAAGATAGAAAACTCCATCGAATTTTTCCAACCTCATAAAAAATAAAAATCACCTTAAAGCACTGAGGCTAAAAGCCTAGGGGATATTTTTTTATCCATTTTTACAAAATCACAAAACAGCTGGAAAAATTTCAAAGAAATCCTTTATTAATGCGGATTAGAAGCGTATAATGAAAATAAAGAATGGCTTGTTTTCAGTG # Right flank : TATTAATCCCTTTCCAAAGCTAGTATTTAGGTTTTCGTTGAACATTAACATAATCCTACACGGGGTTTGGGCGAAGTCCATTATCCTTCTTTAACCTAGAAAAATTACTCTCTCAATATACAAGTGTTCTCAATAAGTTTAAAAACTACATATAAATAGCATCCATATATATGAAATAGTTGAATTATAACATACACATATGGAGGTTTGGGCGAAGCCCATTAGAATCATGAACTGAGAAAAATCACTTTCAAAAAAACAAATCAGAACTAATAAGGTGAGCAAACCAAGATGGAGGTTTGGGCAAAGCCCATTAGAATCATGAACCGAAATAATCACCTTATCAATAAACTAACATACCAATAATTTTCTAACCCACATATGCAAAAATTCACCCCCAAAAGATAGAAAACTCCATCGAATTTTTCCAACCTAATAAAAAATAAAAATCACCTTAAAGCACTGAGGCTAAAAGCCTAGGGGATATTTTTTTATCCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 38533-39220 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYV01000063.1 Clostridium roseum strain DSM 7320 CROST_contig000063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38533 30 100.0 36 .............................. AAAAATCTAATGCTCTCTACACTTACAAGAGGATAG 38599 30 100.0 36 .............................. AAAACTTGTTCTCCTCCACTTCCTATAGTAGAAAAG 38665 30 100.0 36 .............................. TTTTCCAATGCCTTTTTAGGGCTATCTCCATTATCT 38731 30 100.0 35 .............................. TATTCGTGAGGGCAATCACAACATGACCTATAAGG 38796 30 100.0 35 .............................. TAATATACCATAATAGTGGCTGCCCTTGTAACCTT 38861 30 100.0 37 .............................. TCTATACTTTGTCCCATTTATCCCACCACCTTTGATA 38928 30 100.0 35 .............................. CAACTTATAGAAGGAAAGACAGGACTTACAGATGA 38993 30 100.0 36 .............................. CTGCCAATATTAAATCCATATGGATCTATTCCTATT 39059 30 90.0 36 ...G...........AG............. ATACTTTCGCAAATTTACTTAAAGTATCTGATTTAG 39125 30 90.0 36 ...G...........AG............. TTAGCAGTAAATGTGTAACCAAATATAAACCGTAAT 39191 30 83.3 0 ...G...TA......A.T............ | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.7 36 GTTTAACATTAACATGAGATGTATTTAAAT # Left flank : ACAGTTGAATTATAACATACACATATGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACCAAGAGAAATCACTTTCTAAAAAACAAATCAAAATTCATAAAGTGAGAAAACTAAGATGGAGGTTTGGGCGAAGCCCATTAGAATCATGAACTGAGAAAAATCACTTTCAAAAAAACAAATCAGAACTAATAAGGTGAGCAAACCAAGATGGAGGTTTGGGCGGAGTCCATTAGAATCATGAACTGAGAAAACAGCTTTCTTAATGTAATAAGTTTCTAAACTCCATAAAAACACCCCCAAAAGATAGAAAACTCCATCGAATTTTTCCAACCTCATAAAAAATAAAAATAACCTTAAAGCACTGAGGCTAAAAGCCTAGGGGATATTTTTTTATCTATTTTTACAAAATCACAAAACGGCTGGAAAAATTTCAAAGAAAGCCTTTAATAATGCTGTGTAGAAGAGTATAATGAAAATAAAGAATGGCTTGTTTTCGGTG # Right flank : TTTTAATACAAAATTGTATTTTAAATTTTTCTTAAGTTGAACATTAACATAATCCTACAAGGGGTTTGGGCGTAAGCCCATTAGAATCATGAACCAAGAGAAATCACTTTCTAAAAAACAAATCAAAATTCATAAAGTGAGAAAACTAAGATGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTAAGAAAAATTACTTTCTCAAAAATAGTAAGAGGTGTAAAATGATATTTTTCGATATAGATGGAACACTATTAGATCATAAGCGGTCTGAATTATTAGGTGTTAAAGAATTCTATGAGATTTATAAAGAAAATTTTAAAATTGGAAGAGAAGAATTCTATAAAATTTGGTGTGAAATATCAGATAAATACTTCAATATTTATTTAAAAGGCAAAATTACATTTAAGGAGCAACGTATTAACAGAATAAAAGATATATTTTCCTATTCAAACATAAAGCTTACAGATGAAGAAGCAGAAGAAAAGTTTAAAATTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 35840-32740 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYV01000100.1 Clostridium roseum strain DSM 7320 CROST_contig000100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 35839 32 100.0 35 ................................ CTATAGAAGTTAATTCGTTAGTCAACTCATTTTCA 35772 32 100.0 35 ................................ TCTTTTAAACCCTAAATACACACCAATAATTGCAA 35705 32 100.0 34 ................................ CAAGGTAGCCAATCCCAACTCTGGTCCACATAAA 35639 32 100.0 35 ................................ CTCCATCGGCTGCGGATACATCATCAAGTTTAAGA 35572 32 100.0 34 ................................ AGTAATGCTCCATTATTTCTATAATCATCTACTT 35506 32 100.0 34 ................................ TCAAATTGCTCAATAGAATATTCATCAGAAAAAG 35440 32 100.0 35 ................................ ATCAATAAATTTTATAAAAAACACAATTATAAATG 35373 32 100.0 35 ................................ TATAAATACTTGTAAAAGCCAGTAACAGAAGAATG 35306 32 100.0 35 ................................ TTCTTCAAAATTTGCTTAAAACTGACGACCTGAAG 35239 32 100.0 35 ................................ TAAATGATGATATTGAAATAGGTCAATCTTTAGAA 35172 32 100.0 34 ................................ CAACATATAAATTTCTCTTTTATCCAGGAAGTAT 35106 32 100.0 35 ................................ TCATGTTTGGACTTCCACCACTTATAATACTTTTT 35039 32 100.0 35 ................................ AGATATAGATTTTGAAAATGCTTTAAAAGCTAATC 34972 32 100.0 35 ................................ AATTAATAGGACTTTAAGTTGGATTTCTCGTCAAG 34905 32 100.0 35 ................................ TCCAAGTGCGCCTATTAGTTTAGTATTTAGTACAA 34838 32 100.0 34 ................................ AAAAGAAGACCAATAAAAAGAAACAACGATTTGC 34772 32 100.0 35 ................................ CAATTACTACATCCATATCCTTTTGCATTTTCCAC 34705 32 100.0 35 ................................ TAATAATCATCTTGTTAAAAAGAAAAAAATCATAA 34638 32 100.0 36 ................................ CACAATTCATGTTACACTCAAGCGGCGCCTAAAGAT 34570 32 100.0 35 ................................ ATTCATAAAACCCCTCCATTACATTATAGTACCAT 34503 32 100.0 35 ................................ AAAATATTATAGATAGTAGCTTGAAAAGTTTACTT 34436 32 100.0 34 ................................ CACTGAAAAAACTGATGAAACATAGATTTAAAAA 34370 32 100.0 34 ................................ ACGATTATTTGCTATAGCTAAAAGTGTAGGTTAT 34304 32 100.0 37 ................................ TTGAGAGTTGCGGTGATAATATAACAGTTTTTAAGTC 34235 32 100.0 35 ................................ TAAAGATAAGACTAAAGAAGATTTGCAAAGGCTCT 34168 32 100.0 35 ................................ TAAAGATAAGACTAAAGAAGATTTGCAAAGGCTCT 34101 32 100.0 35 ................................ AAGGAAGAAATTGCAGATATAGTTATCAGAACTTG 34034 32 100.0 34 ................................ CATTTAGTGAAGAATATAGAGAGACAAATAAGAC 33968 32 100.0 35 ................................ GTAATGCTATAGATGCTACTAGAAACATGGTTATA 33901 32 100.0 35 ................................ TTTATAGGTAATAACACATTCACCATTCCAGTGAT 33834 32 100.0 35 ................................ AAATGGTATGTTGCCAACTATGTTTGATATAGAAG 33767 32 100.0 34 ................................ AAATAAAGTTAAACAAAATCATAATTTTGTTGTT 33701 32 100.0 34 ................................ TCTAAATAATTATATAAAAACTAAGGTTATGTTA 33635 32 100.0 35 ................................ TGAATATAGAAAAACTGGTAGAAACTATATAATTA 33568 32 100.0 34 ................................ TTTTGTAAAAACATTAACAAATTAACAGATGATA 33502 32 100.0 35 ................................ AATAAAACAAATTGCTAAAAAGCTTAAAATAACAC 33435 32 100.0 35 ................................ TGTTTACTTAAAGTTATAGTCGATGTACGTATAAA 33368 32 100.0 34 ................................ ATAATAAAAGGCGAAGGATCTTTAAAGAAAGTTA 33302 32 100.0 34 ................................ CATTCAAAGTAAGGCTTTATTGGAAAAATATCCT 33236 32 100.0 35 ................................ ATATGGATAAGTTTAAAGCAAGATGAAATAAGTGA 33169 32 100.0 34 ................................ TGTTATTCAAATTGTACGACTGATTTTGATTTGC 33103 32 100.0 34 ................................ AATCTAGGGATTTAAATGGCTTTATGAAGAAGTG 33037 32 100.0 34 ................................ AAAAAAAGAATATGTATGTGATATAGACAAAGGA 32971 32 100.0 34 ................................ TATGAGGTGATGGATATGGTTTTAGAGTTATCTA 32905 32 100.0 36 ................................ ATCTTTTAAAATATCAAATTTAATGCCAATTTTAAT 32837 32 100.0 35 ................................ TTAGCAGCCATGTAAGCCTTAGAAAAATACTTTTG 32770 31 81.2 0 ...AT........T...A.T....-....... | ========== ====== ====== ====== ================================ ===================================== ================== 47 32 99.6 35 GTCGCATCCTATACGGGTGCGTGGATTGAAAT # Left flank : TTTTTATGAGGTAGAGGTGAAATATTTATGATGGTTTTAGTAACTTATGATGTGAATACTGAGAGTGATGGAGGAAAAACTAGGCTTAGAAGGGTGGCTAAGATATGTGTTAATTATGGGCAGAGAGTTCAAAATTCTGTATTTGAATGTTTAGTTAATCCAGCACAGTTTGTAGAACTAAAAAATTCACTATCTAAAACGATAGATTCTAATAAGGATAGTTTAAGATTTTATTTATTGGGCAAGAATTGGGAAAAAAGAGTAGAGCAAATAGGAAAAAATGATACATATCATCCACTAGATGATGCAATAATAATTTAATTTGCGAAAGGTAAGTGAACATGAAATACTGGGATGATTCGCACATGAAAATACAATAAAATTGTGAAGAAAACGTCAGATTTTAGATATTATACAAAACAGTATGAGTATTTTTTAAGTTTAATTCTAAAATTATATGATTATATAAGTTTAGTAATGAAATTATATGTAAAAATGCA # Right flank : GTATTATCAGGGAACTTTAGATTATATAGAAATTTTATTGATGATGCCTTTGGCGAGTTTAAGAGGTATATATTTAAGAGACTATTATTAAAAATAATATGGAGAAGGCGAAACATAGGAATTACTATATTCCCAAAATGGAGAACAAGTAATAATAAGGGATTTTAAAATAAATATATTATATGCTATAAAAGATTTCCTATTTAATATTACAAAAGCCATTGATGTAAAAGAGGAAAATAGAGAAAAAGTATATTAGAGCTTTATAGGGAGAAGAAGAAAAGAAAGTACAATGATTTTTTTGGTGCTAGATGATATTAATATTGTCTAGTGCTTTTTAGATGAAATATTTATTGTTATTAATAATTAGAATAAAGAGTATGTGTAAGTATAATTAATGCAGTATTTACATTAGATGTACTTAGTGTTATAATTTAGTAAATAAAAAATATTACGGTAAGGAGAATTTAGGTATATGAGCACTTATGAGATATTGCCAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //