Array 1 831537-831992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018770.2 Escherichia coli strain 2016C-3936C1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 831537 29 100.0 32 ............................. GCGGTTTTTTTATAACATTTGATTCACTTCAG 831598 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 831659 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 831720 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 831781 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 831842 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 831903 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 831964 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 857541-859215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018770.2 Escherichia coli strain 2016C-3936C1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 857541 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 857602 29 100.0 32 ............................. TGTTTCGGCTGATTTGTTCGCCGCGTCAGTGC 857663 29 100.0 32 ............................. ACAGTTCCCCGCATTAGCGTGGATAATCCGTT 857724 29 100.0 32 ............................. CCCCTGATTAAAACCAATAGTCTCGTAATATT 857785 29 100.0 32 ............................. GCCAGATGAGGGATTCGCAATGAGCAACATGA 857846 29 100.0 32 ............................. TAATATGCTCTATAAGTGCCTCTATCCGATCC 857907 29 100.0 32 ............................. TCAGATCCGTACACTCTGCAAAACTCGCAATA 857968 29 100.0 32 ............................. ATTCTGTTTTCGCTGCTGTAGACCAACTTTGG 858029 29 100.0 32 ............................. CCCAGGTTTATTTGCATGAAAATACATTGCGC 858090 29 100.0 32 ............................. ACCGGGTATACAGAGCAACCGCCAATACTCGC 858151 29 100.0 32 ............................. CAAGTCGGGCGAAATGCAGGACACTTTATCCG 858212 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 858273 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 858334 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 858395 29 100.0 32 ............................. CGGCGGCAATTGATGCGAAAGACCTTGGCAAT 858456 29 100.0 32 ............................. CAGCTCGTTCGCATGATATGTACCCGAGACGG 858517 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 858578 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 858639 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 858700 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 858761 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 858822 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 858883 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 858944 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 859005 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 859066 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 859126 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 859187 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //