Array 1 2648116-2646622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007530.1 Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2648115 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 2648054 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 2647993 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 2647932 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 2647871 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 2647810 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 2647749 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 2647688 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 2647627 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 2647566 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 2647505 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 2647444 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 2647383 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 2647322 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 2647261 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 2647200 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 2647139 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 2647078 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 2647017 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 2646956 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 2646895 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 2646834 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 2646773 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 2646712 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 2646651 29 93.1 0 A...........T................ | A [2646624] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2665317-2664251 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007530.1 Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2665316 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 2665255 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 2665194 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 2665133 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 2665072 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 2665011 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 2664950 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 2664889 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 2664828 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 2664766 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 2664705 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 2664644 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 2664583 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 2664522 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 2664461 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 2664400 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 2664339 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 2664278 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //