Array 1 2626-3493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOG010000025.1 Vibrio cholerae strain C8C.2 Scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2626 28 100.0 32 ............................ AAGTCATTACATGTAAGCCTTTTTATACTCGT 2686 28 100.0 32 ............................ ATAAATGACGAGACCATCCTCTTGCTCCTTAA 2746 28 100.0 32 ............................ GCGCACACTCATTTGATGGGTGTTTGGAAAGC 2806 28 100.0 32 ............................ ACAACCAATGCGCGGCGAGTGTCGAGCAAGCA 2866 28 100.0 32 ............................ AGTTTGATGTGCAGTTCGGCGTGGAGACGGAA 2926 28 100.0 32 ............................ ATCAACATAATATTCAGGATTATTTTTATATA 2986 28 100.0 32 ............................ ACCTCGCGGAATGAGTCAGGCCAAACCTACTG 3046 28 100.0 32 ............................ AACAGGTCAAAACAGAACGTCTATCACCGCCA 3106 28 100.0 32 ............................ TGAAGTTGGTTTTGTGATTGAATCTTTAGTGA 3166 28 100.0 32 ............................ TTTTTAACTCCTAGCGGCCTTTGTTCTGATAC 3226 28 100.0 32 ............................ TGAAACACCCAAAAACTATGACTCAGTAAAAT 3286 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 3346 28 100.0 32 ............................ AAAACATGACCGCCAAAAAACGACAGTAGAAG 3406 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 3466 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCGCTGTATGTTTCAGCGTGATTGCCTCATTGAGTTGTAGCACCAACATGTTGTAAGTGGGTTTGTCGGAGAGGGTTTCCACATTGGCTGATTTTTAGGATGAAAGCCTGTATTGGTCAGTTCATAGGTAAAAGTTGAGCCAGTTCTAATTCAATGAAAGTCGAAGTTTGGTCAATGATTTCAGTGGGTTATTCTTGAGTTGGTTCAAATGTAAAGTGTTGAAGCTTAAGCATACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGATTACGGCGTTACGCGGTAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGGGGTTACGGTTGTTGTGTTTGAGTTTAGTTGTTGTGCGTTGTCAGCCCCTTAGGCGGGCGTTATGTACTTCTCTGAAATCCTTCCTGAAAATCAAACTTGTGCACAGTGTTATTATGCGTTACTCTTTGTGTATGGATGCACAATGAGACAGTGCAAGTTGTAATGGCATTAGAATTTAAAGATAAGTGGTTAGAGCAGTTTTATGAGGATGATAAACGACATCGTTTAATTCCAAACAGTATAGAAAATGCTCTATTTCGAAAGCTGGAAATCTTAGATGCAACTCAAGCTGAGTCAGACTTAAGAATTCCACCGGGCAATCGATTTGAACATCTTGAGGGAAATCTTAAAGGTTGGTGTTCAATTCGAGTGAATAAACAATATCGTTTGATTTTTCAGTGGGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 275-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOG010000029.1 Vibrio cholerae strain C8C.2 Scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 274 28 100.0 32 ............................ TAGCCCGTTATACTTTTTTGCAATGCGTTCCC 214 28 100.0 32 ............................ GTACCCGGCTCTGCCGCTGCTGCTATCACTTC 154 28 100.0 32 ............................ ATATGCGCGACTTAGTATCTCTTCCTGACATT 94 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGGTAAGTGCGATCATTTTGGGGAAGCATGAGTTATTTGACAACAAAGGTACAGGGAGAACACCTCTGAACGTTTTAATCGAAGTATTAGCGGATAAAAATGTACCTATATTTTATGGTTTTGATAGTTGTCATACGCATCCGATGTTCGTCACACCATTAGGTGTGCGAGGTACAATCGATTTCGACAATCATACCTTTAAGCTAGAAGATCGTTGGGTAAAAGCAAAATAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCTGTGGTTACGGTTGTTGTGATTGAGTTTAGTGGTAGTGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94776-95823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOG010000011.1 Vibrio cholerae strain C8C.2 Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94776 28 100.0 32 ............................ AGTAAGGTGGTTATCATGGCAAAGCATCACGT 94836 28 100.0 32 ............................ TAGCGTGGCGGGAGAGTTTGGCGGGCGCTTTG 94896 28 100.0 32 ............................ ATTGCTGCGGCCAGCATGTAGACAAAAGCAAG 94956 28 100.0 32 ............................ AAACAACGGAATCCCTAAACTGCATAACGTCT 95016 28 100.0 32 ............................ TTACGACATTTGCACTTTGAGTAGGCCGCGAC 95076 28 100.0 32 ............................ GCCAACCGTTATTGACGCGCTGCCTTCAATGC 95136 28 100.0 32 ............................ GTTGAGGACGCCAACAACTTCAACCTAGTGAT 95196 28 100.0 32 ............................ ATGACCGTATCGCCGCCTATCGTTTTCATTCT 95256 28 100.0 32 ............................ TTTAAATGACGCCGTGTGCGCATGACTCTTTA 95316 28 100.0 32 ............................ ACGAAGCGAAATCGACTTCAAGTCGCCAATAA 95376 28 100.0 32 ............................ TTATGTCCCGATACGTGAGAAACCAAACACTG 95436 28 100.0 32 ............................ GTTCTCGTCTAGCGCCTTATCTTTTGTTGTTG 95496 28 100.0 32 ............................ TCGCTCACAGTTTTAAAACAAAGTTTCGCCGC 95556 28 100.0 32 ............................ AGCCCGCCCCAACACCAAGAACCGTTGGTTTG 95616 28 100.0 32 ............................ ATGACACAAGGCCAGTTCGATGCGTTCACCTC 95676 28 100.0 32 ............................ TTTGGGCGTGACGTTGTATTCCCATGCTTTTA 95736 28 100.0 32 ............................ TTTGCGCTTGAACCATTCCAGCGACTCTTTTG 95796 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAATATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCACATGGGTTGTCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCCGTACCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAACATCACGCCCGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGAGCAAAGCGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTACAGAATGCGCTCATAACCTTGCACCATTTTACAAGTGTCGATATCCATGCCTGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAACGGTAGCTTTGCAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1450-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOG010000035.1 Vibrio cholerae strain C8C.2 Scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1449 28 100.0 32 ............................ TCCGACTGGATGATTGAGGCGGTCGGGAATAT 1389 28 100.0 32 ............................ ACCAGAGTGCAGAAGGTTAATGAGGTGGCACA 1329 28 100.0 32 ............................ AAGCAAGACTTCATCAACATGGGCGGCAAAGA 1269 28 100.0 32 ............................ GCGCACACTCATTTGATGGGTGTTTGGAAAGC 1209 28 100.0 32 ............................ ACAACCAATGCGCGGCGAGTGTCGAGCAAGCA 1149 28 100.0 32 ............................ ATCAACATAATATTCAGGATTATTTTTATATA 1089 28 100.0 33 ............................ CAGTAATGGTAAAACCGATTTCAGGTTCAATCT 1028 28 100.0 32 ............................ TGAAGTTGGTTTTGTGATTGAATCTTTAGTGA 968 28 100.0 32 ............................ TGAAACACCCAAAAACTATGACTCAGTAAAAT 908 28 100.0 32 ............................ TCACAACCCAAACGCAAGGGATAGATCATGAG 848 28 100.0 32 ............................ AAATCCAGATAGCCTGCCAAAGTCAATGGAAA 788 28 100.0 32 ............................ ATGAAGGCCACGACCACGCATAGGTGATAAAC 728 28 100.0 32 ............................ AATTAGCCGCCTTTGAGCGGCTTTTTTTTGCT 668 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 608 28 100.0 32 ............................ AAAACATGACCGCCAAAAAACGACAGTAGAAG 548 28 100.0 32 ............................ ACCAAATGAGCAAGCCACATCATAATCAAGCA 488 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 428 28 100.0 32 ............................ TGTTTAACCGCGAACCCATCACAGTAACTAGG 368 28 100.0 32 ............................ AGTTAGGCCGCAAGTGATCAATGGTGCAACCT 308 28 100.0 33 ............................ GATCTTGTAAAGATGGCGGTAGTAGATAGGTTC 247 28 100.0 32 ............................ TTCTTGTTGCATTTTTACCGCTTGCATTAGCT 187 28 100.0 32 ............................ ATCAGCTTATGCTGCTCTGTGATCACTAATTT 127 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 67 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCGCAGGAATGACTTTTGCGTTTGTTCTGAAATCTATGAATGTTGGGCTTGCTTACGCCATTTGGTCGGGCGCAGGCATTGCATTAGTATGTGTAGCGTCTGTCTTGATTTGGCAACAAAAATTCGACATATATGCCTTGGCTGGTGTGATGCTCATTGCATTAGGCACTGGATTAATCACATTAAAATCTAGTGTAGCACTCCAATAAATAGACTTAGCATATGGGCAATGTTACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGATTACGGCGTTACGCGGTAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 349-856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOG010000045.1 Vibrio cholerae strain C8C.2 Scaffold45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 349 28 100.0 32 ............................ CGCCATAGTTCACCGTGATTGTACCAGCCACC 409 28 100.0 32 ............................ TGAAACCCAATATTCAGCTTGGTTGGCACCAA 469 28 100.0 32 ............................ GTAAAGCTTATGATCGAGCATAAAAACAAACT 529 28 100.0 32 ............................ ACACGTGGGCGCTCAAGCTCTTTCAGCTGTTC 589 28 100.0 32 ............................ GTTCACGCGATCTTTTCATGGGTACGCCAATT 649 28 100.0 32 ............................ ATGCTTGATAGTCCGACGACAAGCTTACCTGT 709 28 100.0 32 ............................ AAAATCTGGCGCTCAGGCTGGAATTTCGGAAG 769 28 100.0 32 ............................ GTGACGGCCTTTTTCACGATGTTCTCCTAGCT 829 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAAAAA # Left flank : GAAACTCTATGGTTTGGCTAATTATTTCAATGGTTTATTTTTGAGTTGTTTCAAATGTAAAGTGTTGAAGCTTAAGCATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGCTTGAGTTTGGTTGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTGCTGCTAAAGTTTCATAG # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATACAAAACAATGAGGTACTCTCTGTGAAATATATTTATAGCCTCTTAATTTTGATCATTATGAGTTCAAAATCTTGGGCAGGTTGCGATGAAGTAAGCTCGCAATGCCTAGTGATTGATAGTGATAAAGAAAGTTTTGAGTCGTGTGAAATTGCAATATGCGCAAATATGAGCGAATACCTAGTAAATGTAACATTGGAAAATGGTGGTAGGATTTTTATGCGCGACGATAGCCAGATACAGGTAATTAATGTAAATGGTAGTAAAGGTGTAACCAGTTCACCTCCGACCGACAAGAGTAATCTGACTTGTTATGCAATTGCCGACATGAGCGTAACATACTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6135-5447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOG010000018.1 Vibrio cholerae strain C8C.2 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6134 28 100.0 32 ............................ AGTAAGGTGGTTATCATGGCAAAGCATCACGT 6074 28 100.0 32 ............................ TGTAAATACAAGCGAATCGCAACCCGTCAATA 6014 28 100.0 32 ............................ AGTACAAAGAGAAAGGCCGTCAGTGGTTCCGA 5954 28 100.0 32 ............................ TGTATAGTAAGTTGTGTAAGCACATTGTTCGT 5894 28 100.0 32 ............................ ATTAGCAGGCGCAATTGTGACTGAACTGATTC 5834 28 100.0 32 ............................ ATACTCAAAAAGTCGGTCTTTCTGCATCAATG 5774 28 100.0 32 ............................ ATCCCGTACGTGGAAGCGCGCAAAGCGGGATG 5714 28 100.0 32 ............................ TTTTGAATGCTCATAACCGAGCACAATTGCAC 5654 28 100.0 32 ............................ GGCAATAAAGACAGCGAGTAGGTTTGAAAAAA 5594 28 100.0 32 ............................ TCTTCTCAATCGTCCACTGACTTATCTCAAAC 5534 28 100.0 32 ............................ TATTCAAAAGCTGACCGTGTATTTCGCTTTTA 5474 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGATATTCAACACGGCAGATTTGGTTTCACAAAAGGCAGCATTATCGCTGTGAGCTTGCTTTCTTTGTCGCGGACTCTTAACCGTGGCCAACTTAACCTTGATCGTTTTGATATTTGACAGGTCACTTCACAGCTTTTGGCGTTGGACGTGTGCATGTTCGATGCATTTGCGTAAAATGCTTTTCAAGTAAAGGTGTTAAAAATCATTGTTAAACAATGGGCTACGAAACTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGATTGAGTTTTGTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAGTTACCCATCATTTTTCGTTGAGTTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAGAGTCTTATA # Right flank : TACTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGTCGCGGTGGTTACGGCTGTTGCGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGTTTCATGGAGGAAACATGACACATCATGAGTTATTAGATAAAGCACTTTATAGCAGTGCAACAATTCATCAACCTCATTCTTTAAAGGCGTATCTATCAGCTAAAAACCTCTATGATCACCTTGGGCAACCCCCAAATATATGGGCTCAAACAAGCCATTTAATCAACCAAAGTGAACTTAAGGTGTCATGCGTTTACTCCGACACTGTTCAATCCCCTAAGTTTTCAGAACTTCGTATAGAAAGAATATTGCGGCGAGGCATCTATCCAGCAGCCTATCAGGCGATAGTACAATGGCATGAAAACAAGGGGTTTAATGACATATTTTCTCACTATGTATCGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //