Array 1 96692-95687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPF010000002.1 Escherichia coli strain PE01_007 .PE01_007.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96691 29 100.0 32 ............................. GATCCGGCGTCATGGGGTCGCCCCACAATACA 96630 29 96.6 32 ............................T GCTCCCACTCTATCGTTACGTGCTCACCGCAG 96569 29 100.0 33 ............................. TTTGCCTGGGCCGGTTCACCAAAAACCGCGCGC 96507 29 100.0 32 ............................. GCAACCGTCACAGCCTGCCCTGGCTTTACATA 96446 29 100.0 32 ............................. TCTCTTCACTTAAACTGGACGCAGTTTGTTCA 96385 29 100.0 32 ............................. CGAATATAGACCGGATACCCAACGTTTTTTAA 96324 29 100.0 32 ............................. CGGCGTGACACACATAGTCATTGTGTACGCTG 96263 29 100.0 32 ............................. GGTGTTAACCGGGTAGCGGCGGCCCTTCAGTT 96202 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 96141 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 96080 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 96019 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95958 29 100.0 32 ............................. GAAAAGTTACTTTTGTGTTCAACTGATGCATT 95897 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95837 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95776 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95715 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123705-122394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPF010000002.1 Escherichia coli strain PE01_007 .PE01_007.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123704 29 100.0 32 ............................. ATCCCGACGGGCAACGCGATACCCGGTTTATT 123643 29 100.0 33 ............................. ATTCCGGACGACGTGCTGGCGCGATTCCTCGGC 123581 29 100.0 32 ............................. ACGATTGGGCAGCCAGAGTTGCCGCCGGGAAA 123520 29 100.0 32 ............................. TCCGCGTGTCGCGCTGTCGCGCAGCCGGACGA 123459 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 123398 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 123337 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 123276 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 123215 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 123154 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 123093 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 123032 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 122971 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 122910 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 122849 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 122788 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 122727 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 122666 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 122605 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 122544 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 122483 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 122422 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68263-69192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPF010000013.1 Escherichia coli strain PE01_007 .PE01_007.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68263 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 68323 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 68383 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 68443 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 68503 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 68563 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 68623 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 68683 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 68743 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 68803 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 68863 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 68923 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 68983 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 69043 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 69103 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 69163 28 85.7 0 ....................A...C.CT | T,C [69183,69187] ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 78254-79060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPF010000013.1 Escherichia coli strain PE01_007 .PE01_007.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 78254 28 100.0 32 ............................ GGATGCTTTGTGCAGGTCATTAATAGAATAAC 78314 28 100.0 31 ............................ GTATTGCCTGACTATTCACGCAACAGATCGC 78373 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 78433 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 78493 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 78553 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 78613 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 78673 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 78733 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 78793 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 78853 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 78913 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 78973 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 79033 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //