Array 1 954229-959961 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJP01000001.1 Erwinia amylovora strain CTBT1-1 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 954229 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 954290 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 954351 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 954412 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 954473 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 954534 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 954595 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 954656 29 100.0 32 ............................. CGGCGCTGTCTATCCCCTGCGCGATCCCCTTT 954717 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 954778 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 954839 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 954900 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 954961 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 955022 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 955083 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 955144 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 955205 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 955266 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 955327 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 955388 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 955449 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 955510 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 955571 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 955632 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 955693 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 955754 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 955815 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 955876 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 955937 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 955998 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 956059 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 956120 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 956181 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 956242 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 956303 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 956364 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 956425 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 956486 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 956547 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 956608 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 956669 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 956730 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 956791 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 956852 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 956913 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 956974 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 957035 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 957096 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 957157 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 957218 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 957279 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 957340 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 957401 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 957462 29 100.0 32 ............................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 957523 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 957584 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 957645 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 957706 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 957767 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 957828 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 957889 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 957950 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 958011 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 958072 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 958133 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 958194 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 958255 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 958316 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 958377 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 958438 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 958499 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 958560 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 958621 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 958682 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 958743 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 958804 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 958865 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 958926 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 958987 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 959048 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 959109 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 959170 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 959231 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 959292 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 959353 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 959414 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 959506 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 959567 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 959628 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 959689 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 959750 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 959811 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 959872 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 959933 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 94 29 99.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 969001-970555 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJP01000001.1 Erwinia amylovora strain CTBT1-1 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 969001 29 100.0 32 ............................. CGGGCGAGTTTTTCAGGATGCGTCTCATTGAA 969062 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 969123 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 969184 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 969245 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 969306 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 969367 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 969428 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 969489 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 969550 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 969611 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 969672 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 969734 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 969795 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 969856 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 969917 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 969978 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 970039 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 970100 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 970161 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 970222 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 970283 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 970344 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 970405 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 970466 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 970527 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 980019-980347 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJP01000001.1 Erwinia amylovora strain CTBT1-1 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 980019 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 980079 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 980139 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 980199 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 980259 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 980320 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //