Array 1 114405-109132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPYN010000005.1 Bifidobacterium adolescentis strain MSK.7.22 NODE_5_length_188980_cov_356.384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 114404 33 100.0 33 ................................. TCCGCATCCCTTTCCTCCACGGCATCGGCGAGC 114338 33 100.0 36 ................................. CAGTTTGATGCATCGTTGAACGGAAGTTCGACGCGG 114269 33 100.0 35 ................................. CTTGTCTTATTCGGTTTCCAGGGCGTTCAACGTGA 114201 33 100.0 35 ................................. TACATCCTCGTCCGCGGCGCCACGCTCGCCTACAG 114133 33 100.0 34 ................................. AGTGTACATATCCAGCTGGATATAATCAAACCAA 114066 33 100.0 33 ................................. GTCTTCCGGCCTGATGTGCTCGTCTCGTGGAAG 114000 33 100.0 35 ................................. GGATGCACATGCCAGTTTGTAATCGGCATCATCGG 113932 33 100.0 34 ................................. GTTTTCGGCTTTGATGTCGAAAACGCCATCCTTG 113865 33 100.0 34 ................................. CAGTTGAAGCTTTACAACGCCGACCAGCCTTGCC 113798 33 100.0 34 ................................. TGAGTGTCCGTCAGATTATCGGTCAGACCCTCGA 113731 33 100.0 34 ................................. CTGTCACTTGGCTGATGCGTTCCAGATCTCCGAT 113664 33 100.0 34 ................................. TCAAGACGTTGCTCGACGAAAACAAGGCGCGTGG 113597 33 100.0 34 ................................. TCTCTTTACGTCGAACGGGGGATGCAGCCGATTC 113530 33 100.0 36 ................................. AACGCCGTCTGATTGTCGGCCAAATCCTTTTGAAGT 113461 33 100.0 33 ................................. TTCGATGGGGGAGTACCCCAAGTGGACGTGACC 113395 33 100.0 36 ................................. AAGTACGGCGGGCCCTTGCCTGCGCTCCGCCAGTTG 113326 33 100.0 38 ................................. TGTGAGAGGGTGCGTCCGGTCTTCAACCGGCGCAGCGC 113255 33 100.0 34 ................................. AATGTAAAGGAGACTAAATAATGGCTGGAGAAAC 113188 33 100.0 33 ................................. TAAGTCTTCGGCGGAGTGATCCGCCACAGGGCT 113122 33 100.0 34 ................................. AAGACCAGTTGGAAGTGCCGGTACGGACTTGGCA 113055 33 100.0 33 ................................. ACCTTGATGGCGTAGCCGTTCGTGCCATCCCTG 112989 33 100.0 35 ................................. CAACAGCGAGAAAAAATCATCGAAGACCTCATCGC 112921 33 100.0 33 ................................. GACGAGAAGGCCGGCGACCGCTACGAGCTGGTC 112855 33 100.0 34 ................................. ATGGCGAAGCGGTCGTATAGGAATTTGCGGTCAC 112788 33 100.0 35 ................................. AGGCATTCGAGGATTTGCGCCGTCTGTGCCGCATC 112720 33 100.0 35 ................................. CATGAGACTGCGCAGGAGGTTTTCAGCGCGGATGG 112652 33 100.0 35 ................................. TGATTCTGAAACTTCGGCGGATTGAATGTAATCCG 112584 33 100.0 35 ................................. ATGTCCGCAAACTGCATGGTTTGTTGGTTGCTCAA 112516 33 100.0 32 ................................. TGGACTGGCGAAGGCTCCAACGAGTCCGTGAC 112451 33 100.0 35 ................................. GGACAGGGGCCGTTCTCGGCGGGTCCGAGCACCCT 112383 33 100.0 35 ................................. ACTGCTTGCGGACTTTTACACCTACTGGCAGGGAA 112315 33 100.0 33 ................................. GCCTTTACCGGCGTGCGTGCTTTGAAAGCGTCG 112249 33 100.0 36 ................................. TGGAACATCCAATTCGACAAAGTGGAAGCATCGGAG 112180 33 100.0 33 ................................. GACTTGGCCTTGGAATCGTCAACGTCAAGCTTC 112114 33 100.0 33 ................................. ACGAGCGGCAACGGCCTGACGTTCTACGGCGAC 112048 33 100.0 34 ................................. CGAATCAAGGAAACCGCCATCACCCATTCGGACG 111981 33 100.0 34 ................................. ACGTCAATCATCACAACACCTCGATTTCGTCATT 111914 33 100.0 35 ................................. ATCATCGACGACCAGATGGCCGACGACAGGCGCAT 111846 33 100.0 34 ................................. CTCAATATCTGCAATGGCTGCTACGTGCGAATCA 111779 33 100.0 34 ................................. AAGCGCAAGATGGACGCCGATGCGTGGGGAGCGG 111712 33 100.0 33 ................................. TTGATCGGCACCTGATTGTCACCGGGCTTGCGG 111646 33 100.0 34 ................................. AAAACGGCGAAAATCGAATACTCGCAATTCTCCG 111579 33 100.0 34 ................................. GCTTTGTTCGTCACGGGTTTCGCGGTGCCGGTGA 111512 33 100.0 34 ................................. CTGTTCCTGTCCATCCTGAATTTCGTGGCGGGAA 111445 33 100.0 33 ................................. ACGTCGTAGGCGCTCACGGTGGCGGTGTCGTTC 111379 33 100.0 35 ................................. CATGTCTTTCCCTCCATGCTTTGCCTTAGAATGGT 111311 33 100.0 33 ................................. CTCGGTCAACGGCGTTTCGGGCGTGCGCACAAG 111245 33 100.0 34 ................................. TACTTGCCGGGCGGACTTTGCTCGGCTATTGCAG 111178 33 100.0 33 ................................. GTATTTAAGGAGACATTTTGACTCAGCAGATTC 111112 33 100.0 33 ................................. ATCGGCTATCGACCATAAGTCATCGTCGTACAT 111046 33 100.0 35 ................................. ATGCTGCCGCCTCCTGTTCGAACAATTGTTCGGCC 110978 33 100.0 33 ................................. GTCCTGACGTTGAACGACTCGCGTGCGGAACTC 110912 33 100.0 34 ................................. GCTCAGAACGGCACCATCGGCGCCGAGGCCGGAG 110845 33 100.0 33 ................................. TCCATAGCTAGTAGAGGACCTCAAACTCTGCCG 110779 33 100.0 35 ................................. TTCTGCGCGCGCTCCAGACGGGCATAGTCACGCAG 110711 33 100.0 34 ................................. ATAGCCCTTGGAATCCAACGAACGGAACTCTCTC 110644 33 100.0 32 ................................. AATCAGTGAAGCTTTGAAACCCTGCGAATCAT 110579 33 100.0 34 ................................. GTTGACGAATGGGGGGACTTGAAGCAGAAGGCGA 110512 33 100.0 34 ................................. ATCGACGAGAACGGGAAATTGGACAATGTGTCGG 110445 33 100.0 35 ................................. AGCATGGCCGCCAGGTCCGCGCCGAATTCGGCGGC 110377 33 100.0 34 ................................. GCGAGCTGGGCGGTGAACAAGAACGCCTCCGAAA 110310 33 100.0 34 ................................. CAGTTGACACACTCAGTGCAACGAACGTCTACAG 110243 33 100.0 35 ................................. AACGCGTTGGCGGGCGACTGATGATATGCCGTCAC 110175 33 100.0 34 ................................. GCCACGAGATCGAACGGCGCGAAGCGGGTGCCGT 110108 33 100.0 37 ................................. AACAGACGACACTTGGGATAACGTGACACCAGTAAAC 110038 33 100.0 33 ................................. GCGTTCGTGGGGAACCGCGTGTAGTTTCCTTCC 109972 33 97.0 34 ................................G GTTAACGTATACTACGAAGGAAAAGCTTCCGCAC 109905 33 100.0 34 ................................. TCTGTGTCGCGTGATTTTCAGCCGACTGTCAGTA 109838 33 100.0 36 ................................. ATGGCGCACCCTCACGACCAATAGAAAAACCTTCGG 109769 33 100.0 34 ................................. CTGACGACGTGCGGCAGACGGTCCGCGTTCACGG 109702 33 97.0 33 ........T........................ GTTATCGGACATGGAAACCTCCATCGGATTATC 109636 33 100.0 35 ................................. CAACCGGTCGGCATCGAGTACAAGGTCGAGGGCGC 109568 33 100.0 35 ................................. GACTGGGAGGGCCGGTGGCTGCGGCTGAACAAGGA 109500 33 100.0 34 ................................. GCGGATGACGCCAACAATATCCAGCCGGACGTGA 109433 33 100.0 33 ................................. TCGTACACCGTCTTCGTTGACTGCGCCGCCAAT 109367 33 100.0 35 ................................. ATCGGGAATGCGTTTCAACGCCGCGGAAAGCTGGG 109299 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 109231 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 109164 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 79 33 99.9 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : CCAATATTGATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCATGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGCGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATAGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGCGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACA # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCGGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCTTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTTGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGACCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTTCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //