Array 1 54328-55661 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGR01000005.1 Moraxella catarrhalis strain COPD_M109 NODE_5_length_107733_cov_39.9511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 54328 28 100.0 32 ............................ AAAACTCATGAGCCAAAACCCTGCTCCACCAA 54388 28 100.0 32 ............................ TGCGGTCGTGAAGACGCAAATCAGCCCTTGAT 54448 28 100.0 32 ............................ TACTGGCGGACGATGGCGGTGTGGATTTTTCG 54508 28 100.0 32 ............................ CCACCAATAGGCAGGGTTTTCTTGTTATTTAT 54568 28 100.0 32 ............................ ACTCATGAGCCAAAACCCTGCTCCACCAAAGT 54628 28 100.0 32 ............................ GAAGTCAAGCAACAGCACACTGCTACCGTCTG 54688 28 100.0 32 ............................ GCTAAATATGCCAATGCTAAAATTGCAGGTCT 54748 28 100.0 32 ............................ TGCCCAGCTTGCAAACAAAGCAAGCACAGCGT 54808 28 100.0 32 ............................ GCAGTCTGCATTAGATGACATCAATAAGAAAA 54868 28 100.0 32 ............................ TACGCACCACGCCATCAAGGGCTGATTTGCGT 54928 28 100.0 32 ............................ AAGCATTTGATGAAAAAACTAGAATTTCATTG 54988 28 100.0 33 ............................ AAAAATCACGATAGCGTGGCTCATCCTGCTTTC 55049 28 100.0 16 ............................ CTGACAGCACACGAAA Deletion [55093] 55093 28 100.0 32 ............................ ATGATGCAGTGACACGCTTTTTCACACGTGGT 55153 28 100.0 32 ............................ GATTTTATCCAGTTTGCCACTGTCATAGACTT 55213 28 100.0 32 ............................ CAAAATGTCAGCGATGAGGGCGTGCGTGTCGT 55273 28 100.0 32 ............................ TTTTTAGAGCGTTTACGCCTTTTTCGCTAAAC 55333 28 100.0 32 ............................ ACTGTAAAAAACACTCATAGAAGGTGTCAGCG 55393 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 55455 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 55514 28 100.0 32 ............................ ATTTCTATCCAGTTGAGAGCCAGTGATAACAG 55574 28 100.0 32 ............................ TGAATTGTGTTCATATCTTGATTTTTCAAAAA 55634 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 23 28 100.0 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //