Array 1 423356-424848 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYM01000002.1 Salmonella enterica isolate STY68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423356 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423417 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423478 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423539 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 423600 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 423661 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423722 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423783 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423844 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423905 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423966 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 424027 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 424088 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 424149 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 424210 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 424271 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 424333 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 424394 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424455 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424516 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424577 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424638 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424699 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424760 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424821 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1037-3001 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYM01000007.1 Salmonella enterica isolate STY68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1037 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1098 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1159 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1220 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1281 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1342 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1403 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1465 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1526 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1587 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1648 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1709 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1770 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1831 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1892 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1953 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2014 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2075 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2136 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2197 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2258 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2320 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2423 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2484 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2545 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2606 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2667 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2728 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2789 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2850 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2911 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2972 29 96.6 0 A............................ | A [2998] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //