Array 1 31833-31336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWA010000047.1 Clostridioides sp. ES-S-0190-01 CD-ESS019001gDNAQiagen-xx-EN-USA-2019-093-JS_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 31832 30 100.0 38 .............................. CTTCTTTTATTAGCATGGTGAGTTAGGCAAATTTTAAA 31764 30 100.0 36 .............................. CTATCATTGTGGTGGTTATCCAGCTCATCTACATAA 31698 30 100.0 36 .............................. AATCTTTCTACCATAGATAAATACCACCTTTAATAT 31632 30 100.0 37 .............................. GTTGCATTATTATTATATACTATTGATATATTTAAAG 31565 30 100.0 37 .............................. CCTATTTTTTTTCTTTCTATTACATAATAAGAAGCTT 31498 30 96.7 37 .................C............ TATAATTTAGGTCTTATATTTTCTTTTGGTCTATCAA 31431 30 100.0 36 .............................. AATGTATCTAATTCATTTATTATAATATTATCCATT 31365 30 90.0 0 .......................A....GA | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 37 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : CATAACATATTCCAGAGCATATCCAAATTCTTTTACTGCTGTAAGATATAAATTATAAGTTTGTTCTTTGGTTAAATTAAGTTCATCAAATCTTACATCTCTAAGTAGCATCCCCTCTTTTTTTACTGCCTTTATACACATTTCATAAGTTTGTGTTTTTGCATTTTTCAAATCCCATGGATGTTTTTTTATCCAATCTACATCTATTTTTTTCATTTGACTCTCCCTTTTTAAATTTTATTTTTATAACACTTTTATTTATATTTATTATATTATTTTTATTTTTTTTTATAATAAGTATATCATTTTTATTGTTTATATAAAATATTGTAAGTTAATTTATATAGTGATATAATATAAATTATCCCAAGCTATTTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTATTTGGGATAAAAAGCTTAAATTAATTGAAACTACTATATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AGAAGCTATCTAAATTAATAGATAGCTTCTTTACTATTCAAACTCTTTTAGGAAATTAAGATATATTTGTCTATGGACATTAATATCTTTCTCTGGGTCAAACCCTCCACCTTCATTATAGATTCTATAAATAAAAATTTCTTTGCTAATATTATCTTGACAACCTACTATAAATAGCCATCTCCCATCTTCTTTTATTGCTATTACTTCTCTTACTTTACCCTGCTTTTTTAAATATTTAATATTAAATTCTTCTAAATATTTTTCCTTATCTATTACATACTTAATTGCATGTTTATCTTGTTTTAGAGCTTCTCTACATATCTCTTCTGTTTGTTTTTCTACAAATTGAAGTGCTAATCCATTTTCTTTTACTGCTTCTCTACATATTTCATCTGTTTGATTATTTACATACTCCAAAGCTAACCCGTTCTCTCTTACTGCTTCCATGCATATTTCATCTGTTTGATTGTTTACATACTTTAAAACATATCCTCTAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 289980-289094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWA010000015.1 Clostridioides sp. ES-S-0190-01 CD-ESS019001gDNAQiagen-xx-EN-USA-2019-093-JS_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 289979 29 100.0 37 ............................. CCTGTTGCTCCTTTTATTATATTTTGTACAGAACCCC 289913 29 100.0 36 ............................. TAGCCCGCCTTGTATTTTATTTTGTTTACTTACTGT 289848 29 100.0 37 ............................. GTATAATTAAAATTCCATACTGTCTGCACCTTATCAC 289782 29 100.0 38 ............................. TAGCGAAACTCACCAAAACGATTGTTACACCAGTTTAG 289715 29 100.0 38 ............................. CCTTCTGAATTGAAGATAATGAAGCTATTTTGGCAATC 289648 29 100.0 37 ............................. TTACTTAAAAACAAGTAAATAGTTATTAACATACCAA 289582 29 100.0 38 ............................. CTTTATCAGGTTGTCTTTTATCTAATAATACAGGCATT 289515 29 100.0 37 ............................. TTGTAAACATCTAGGTCTATATTGGATAAGGTTCTAC 289449 29 100.0 36 ............................. ATGTTTTTCGAGAACATTTTCGTTGTAGGCTTCCTC 289384 29 100.0 37 ............................. TTATCTCACCATCCTTTTTATCTTCGAAAATAAGGTT 289318 29 100.0 36 ............................. AGCCCCTCTTTTTATCGCACTTAATAGTGTAGGCTG 289253 29 100.0 37 ............................. ACAGTTACCCCTTTTTTTATTAATTTCCTCATTTCAT 289187 29 100.0 36 ............................. TGGATTGGAAAGTAGAAGAAGTTTCAAAGCTATTAG 289122 29 82.8 0 ................A.AA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 98.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAGAGAATGTTTGTTATTGTTACTTATGATGTTGTTGAACCTAAATCACTAAACAGGATTAGAAAAATACTCAGAAAATATTTGACTTGGACACAGAATTCTGTTTTTGAAGGAGATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAAGGTTATTGATAATAGTGAAGATTCTATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGAAATTTATGCTAAAATAGGGTTTAACAGTTGGAATATAAGGCATTGAGAGTGTGTGATAATTATTATCAATTGCACTACTGTTCGCTCACTGCAAAATTTGATATTTTTATTTAATTGTAATTGCTTGAGTATAGTATTTTCAATGTACTCAATTAGACCTATTTTGGG # Right flank : AAAACATACATATTCTATAAATAATAATAAGAAAGCAATAAAAAAATGAGGTGAAATAAAATTTATGATAAGAAAATCAAATAACAAAGATATAGAAAAAATAATGGAAATATGGGAAGAAAGTACAATCAAAGCACATGATTTTATAAATAAAGATTATTGGAAAAATAACTACAATACTGTCAAAAACGAATATATGCCTATATCTGAAACTTTTGTATATGATGACGAAGAAGAAATAAAAGGATTTATAAGTATTATAGACAATGAATTTATAGGAGCATTGTTTATAAGTACAAATTATCAAAACTTAGGAATAGGAAGTAAACTTTTAGACTATGCACTTAAAGAATATAAAAATCTAAGTTTAGCAGTATATAAAGATAATAAAAAGGCAGTTGTATTTTATAGCAAAAAAGGTTTTAATATAGTAAAAGAACAAATAAATGAAGATTCAGGATTTAAAGAATATATAATGGAATATAGTAAACAACTTTAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1098-1489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWA010000040.1 Clostridioides sp. ES-S-0190-01 CD-ESS019001gDNAQiagen-xx-EN-USA-2019-093-JS_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1098 30 100.0 39 .............................. CCCAATATAATGGTGACCCAGAAGAATTCCAACATTATT 1167 30 100.0 36 .............................. CTGTAACGCCTTTAGTTACTAATGTATCTATAATAT 1233 30 100.0 34 .............................. TCATTTGTGGCTTTATAGCCTTATTTAAATCTTC 1297 30 96.7 17 ................A............. TTAATTACTAACGTATC Deletion [1344] 1344 30 73.3 33 CCCTGCT.........A............. CAGAAAAGAGTATAAAAGACAACTATATGTAGA 1407 30 100.0 23 .............................. ATAGAGAGCATTAATTTGCAAAA Deletion [1460] 1460 30 83.3 0 .......T........A......A.A...A | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 93.3 30 ATTAAACCTTAACACTTTGTGTATTTAAAC # Left flank : TTTTATATTACAGGCTTTAATCTCCATCCTACTTACGTTGAGGATGGAGTATTTCGCCTATTATTGATAAATTATATATCTTCTTCTTATTTAGATTAAGTTCATCCCACCTTACATCTTTAAGCAATCCCCCTTGTCGCTTTACTGCTTCTATACACATCTTATAACTTTGCTTTTGCATGTGTGCCAATCCCCAGGGGTATTTTTTTATCCACTCTAAATCTGTTTTACGCATTTACCTATCACCTTTTTATTTTCATAACATTATATATTATACTTTAATTTTATTTATAATAATCATACCATTTTTATTGTTTATATAAAATATTATAAGTTAATTTACTTAGTGATATAATATAAATTATCCCAAGCTAATTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTAGTTGGGATAAAAAGCTCATAGGAATTGAAACTACTGAATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AAGAGCTATCTATTAATTTAGATAGCTCTTCTTGTATTATTCAAACTCTTTCAAGAAATCAACATAAGTTTGTCTATGAACATTAATACCTTTCTCTAAATCAAATCCACCATCTTCATTATAGATTCTATCAATAAAAGTCTCTTTGGTAATTTTATATTGGCAACCTACTGTAAATAACCATGTTCCTTCTTCCTTGATGGCTATTACTTCTCTCGCTTCACCTTGTCCTTCTAAATATTTAATATCAAACTCTTCTAAGTATTTTTCCTTATCTTTTATATATCTAATTAAATTCCTATCTTGCTTTAGAGCTTCTCTACAAATCTTATCTATTTGTACTTCTGATAGCATATGCCACTCTACATATTGAAGCGCTAATTCATTCTTTTTTAATGCTTTTATACATATCTCTGGTGTCTGTTTTTTTACATATTGAAGAGCTGAATAATCTTGTTTCACTGCTAATATACACAATTCTTCTGTTTGTTCTTTTACAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTTTGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 7438-8059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWA010000040.1 Clostridioides sp. ES-S-0190-01 CD-ESS019001gDNAQiagen-xx-EN-USA-2019-093-JS_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7438 30 96.7 35 .............................A CATCTTCCTTTGTAAAATCATACTCACTAAGAATA 7503 30 100.0 38 .............................. AATATCTGCATATGTAACAAGTTATGCAAGAATTTTAT 7569 30 100.0 36 .............................. TCTTTTTCTAAGAACATTGCTAAAGGTAGATTTTTA 7635 30 100.0 37 .............................. AATACTTTGTTTAATTTACTATAAATATCATCTTCAA 7702 30 100.0 35 .............................. TCAAAATCTACAATTATTCCATATTTTTCTTTTAA 7767 30 100.0 36 .............................. CGAGTTCAAACAACAAGGTTTTATTGATATTAGCAT 7833 30 100.0 36 .............................. CCAATAGTTTATTCTATAGTAAAAGAAATACTTAAT 7899 30 100.0 36 .............................. AAAGAGGTTATACCTATTTTTATTTTTTCTGGGTTT 7965 30 100.0 36 .............................. AAACATTACTAATGAAAGGGTATTAGAATTTACATA 8031 29 83.3 0 ................T......-AA...G | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.0 36 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : TATTTTTTTCATTTTATTTCCCTCCATATCCCCTCTATTTATAGTAAACATTATATAATACATACTATAAAAAATATGTAAAATATTGTCACTTAATTATAAATAAGGGAGTCTATCTATTTATATAAGTTTTTTTATAAAAAAACTGTTCTATTTTCTTATTTTAATAGTAATTTTTTTACCAATACATTATATACAAAACAATTTATCTTATAACATCTCTTTCGTGAAAGTTGCCTTTTTATATAATATTAACTTTAATTATATAATATGTATTTATTTGGAAATTGTCAATATTTTTAATGAATTTTATTGATTATATAAAATATTGCAAGTTAATTTATATGGTGATATAATTAAATTATCCCAATCTAATTAAGGTATTTATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATAAAAAGCTTAGATTAATTGAAGCTACTGTACTATAAGCATTTCTAAAATTAAGAAATGGCTTATTTACAGCT # Right flank : GAAGTTACCTATAAATTAGATAACTTCTTTTTATTTATATTATTTATTATAAATGTCTACATAAACTCCCATGCTTCCATTTCTAATTTCGACTTTCTTGCCATCCAACTGTAAAGTTTGGTCTTCGAATTTTCCTTTTACAATATTAAAAAGTTTTTCTCCTTTATTTGGCAGAAGCAACTTAAAGCATTCTTTTACAGAGCTATCAAATTCTTTGGAATTGGCAAATAAACCAAATCCAACTACATCGTTTTCTGCATTTACAATTCCCATTTCTACGTCCCAATCACCTTTGTCAGTTTTTTGCTTATATACATATGTTGTTTTGCCATCTTTCATCCAACCTAAGTCTTCCAGTTTATTTCTAAACACCTCATTGCTAACACTCAAATCCACATCATTCTTATCTTCTTCTTTTTTATCCTGGTCCTTTACATTTATAGCATTAATTTTAATTCCATTATTATCTTCTTTAAATCCTAAATAATTAACCAATATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 12763-12979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWA010000040.1 Clostridioides sp. ES-S-0190-01 CD-ESS019001gDNAQiagen-xx-EN-USA-2019-093-JS_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 12763 29 89.7 41 T..T.......G................. TTAGTCTTTTTTTTATTCAATTTTTTTGATGCAATAATTAA 12833 29 100.0 23 ............................. CAACTACACTAATACGTTAGTAG Deletion [12885] 12885 29 96.6 37 ................A............ CAAAGATTCATAAAAAATTTAAGGAGAAATTACAATA 12951 29 89.7 0 ................A...A.....T.. | ========== ====== ====== ====== ============================= ========================================= ================== 4 29 94.0 34 ATTAAACCTTAACACTTTGTGTATTTAAA # Left flank : TCATGTGCACACCCATTAACTTCTACTGTTATTAAATCTATAGAATCGATACCTAAAATTTTATACTTTTTACCTTTTTCTAATCCAAAGTCATTTATATTTGCTATTACATAATCGCCTACCTTAACCTCAACATTTTCTGAACAACTGTCATACATATTTAATAATGCTCTCATAATAATTCTTTCCTCCTATAATATTGAATATCTATTTCTAATATCAAATTTATATACTTCCTCCACATAACATTCCTTTATCTATCTCCTTTTTAGTTTTTATATTTATAACACTATGTTTTGTAATAAGTATATTATTATTTGTTATTTTTTATAATTATTATAACATTTTTATTGACTATATAAAATATTGTAAATAAATTAGCTTAGTGCTATAATTAAATTACCTCAAGATTATTAATGCAATACCTACTTTCTATTTTTAACTATAGATTAGGTAATACTACTATCTTGTGAACATTTCTTAAATTAAGAAATGAATTA # Right flank : AGTATAGTTTTTTATATAAATAGGGATATCTAAATTAAAAGACATCCCTAAAAATCAACTTCTTATCATCATAATATATGGTTTCATTATTCTCTTTTTATTCCCAATCAAAATTTTCACATTTTAAGAACTGCTTTCCATCATCTAAACAAACCGATTTAAACTCAATTTCTTTATCTTTAGAATTACAATATCCTTCATCATTCTTAGCACATGCTAATTGATCACACTTTATATAGTATTCGTTTTTCTCCATTTTAGGATGATATACAGGTGTTGAGCCAGCTACAATTTGTCCACAATGTTTACACATCCAAATCTTACAAGTATACTGCTGACTTCTTGTTGTAATCAGCTCACAATCTTTAACTCTTGAAAACAGGTGCCTAAATATACATCTTAAACTTTTAATAATAATCACCACCCTCTTATTTTTTTGTATCATATACAATATCAATCAGATCTCCATAAAAAAGGCAAAAGGGGACACGCTACTTCAG # Questionable array : NO Score: 3.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:-0.24, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTTTGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 3914-3424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWA010000051.1 Clostridioides sp. ES-S-0190-01 CD-ESS019001gDNAQiagen-xx-EN-USA-2019-093-JS_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3913 29 100.0 37 ............................. TGTAAAACGGTTTCCTAAATTGTGGGGGTGAACTTCT 3847 29 100.0 36 ............................. TCAAGATAATCGAAAGAAGAATTTGCATCTATTGAT 3782 29 100.0 37 ............................. TTGTTATTATTTCCTCCGCTTTCTGTACTATTTAAAT 3716 29 100.0 37 ............................. TAAGTATTTTTGAAGGTGTGAAAGATTGTAGGTTTAA 3650 29 86.2 37 ...G...T........T.A.......... CATGTGGGATGACACCAACGATCACATTGTGCAATAA 3584 29 89.7 36 ..............T.G.A.......... TTCAATTATACAAACGTAACCTGCATAACTGTCTGC 3519 29 100.0 38 ............................. CTATTCTACTGTTATGTCCAGCTCGTACCCATATCCAG 3452 29 89.7 0 .......................AAA... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 95.7 37 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TACTAAAATTAGACCTTAACACTATGTGTATTTAAACCCTTGCAGACCTGTTATAAATGCATAAACGAGTTGATTGAACCTTAACACTATGTGTATTTAAACACTATATACTTCATTTAGCTTAGTATTCATCATTAAACCTTAACACTTTGTGTATTTAAATACTGTATAATTGGAATATTAAAAATTAAACCTTAACACTTTGTGTTTAATATAAAAGAAGCCTCTATAGCAATTATGGAAGCTTCTTTAACTTCAAACCCCATATTGTTTATTTTTATAAATATTTTTATCAATAGCAACCACCAAAAATTGTTTATATAAAATATTGTAAGTCAATTTATATAGTGATATAATTAAATTATCCCAAGCTAATTAATATAGCATTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAGCTTATAGGAATTGAAACTACTGAATTGTAAGCATTTCTTAATTTTAGAAATGGCTTGTTTACAGTG # Right flank : GAAGCTTCTATAATCTCTATAGAAGCTTCTTTTTTTATCTTTCTTATTGTACTATATGGTCATTAGTGTCGTCCCACATACTGCCTCTAATCTCAAATTCAAGATTCTTTTCATCGCACAGCTTCTCTTTGCTCTTAGCAGTTCCAACCCCTGTAAGCTCTGGAGTCCAAACATCTAAGCTATAAAATCCGTCTTTTGTATTAGTCCCAGTGTAAATTTTAATAGGTTCTTCCACTCCATTTTTAGATTTTTTCTGCATTGTATATCTTAAAACTGTCTTATCTGCATTTGTACTTACAACTGTTACATCAAAAACTTTTTGGCTTCCAAAAATTCCTGTTGCAGATAAGGTCTTCCCATCTGCTGTTTTTACATATATATCTTTATAAATGTTTGGAGCCATATTCTGGTTTGTTACACTTAATCCTTTACTTGTACTTGTATTTCTTGTATCCCAAGCTTTTGGCTGTCTCGTTAAGGCATTCGTATTATATTCCACT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 6148-5922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWA010000051.1 Clostridioides sp. ES-S-0190-01 CD-ESS019001gDNAQiagen-xx-EN-USA-2019-093-JS_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 6147 29 100.0 37 ............................. CCATGCTCCACCTCCTACAATATATAAGTTTTGAGTT 6081 29 96.6 36 .................C........... TAGAAGAAGCCTTTCTAAATAAAATAGCTACAGTTA 6016 29 93.1 37 ................T........C... CTAACGATTTGTATTTATTTTATTGTTACTTATATTA 5950 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 97.4 37 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TATTAAACATATTTCTGGTGTTTTATTTTTTACATACTCTAAGACTAATCCATTTTCTCTTACAGCATTAATGCACATCTCATATGTCTGTTTTTCTGCATTTATCAAAGACCATGGATGTTCCTTTACCCAATCTACATCTATTTTTCCCATTTAACTCTCCTTTTTCAATCTTATTTTTATAATACTATATTTCGATTTATTATAGTATTATTTATTTTCCTTTATAATTATTGTACATTTTATATTGACTATATAAAATATTGAAACTTGATTTATATAGTGATATAATTAGTTTATCCCAATCTAATTGATGCAGTTGGAAACTATAAAAGAAGAAGTACAAGAATCTGTTTTAAAAGGAAATTTTAACATTAAAGATTATACAAAGTTTTATGTAAATGAATTAAGATTTACTGAAGTTGTTTGTATTGACATAGAGGAAGAATTTCAAGATTTTATTAATGCTTGTACAAAACAATATATGCCAGTTACTTTTG # Right flank : TAACGCCAATAAAAGTGGTTAAAAAAAGCTATCTAAATTAACAGATAGCTCTTTTTGAATTATTAAAACTTTTTAAAAATTTAAGATATCTTTTCCTATGAGTATTTATTCTTTTCTCTGGGTCAAATCCTCCATCTGTATTATAAATTCTATCAATAAAAGTCTCTTTAGTAATATTATCTTGGCATCCTACAGTAAATAACCATTCTCCATCTTTTTCTATTGCTATTACTTCACTTGCATTTCCCTGCTCTTTTAAATATTTAATATTAAATTCTTCTAAATATTTTTCCTTATCTATTACATACTTAATTGCATCTTTATCTTGTTTTAGAGCTTCTCTACATATCTCTTCTGTTTGGTTTTCTACAAATTGTATTGCCAATCCATCATGTCCTACTGCTTCCATACATATTTTTGGAGTCTGTTCTATTACAAATTCTAAAGATAAGTAGTACTCTCTTACAGCTTCTATGCATATCTCTTCTGTTTGTTCTTTT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //