Array 1 5236-4346 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXO01000042.1 Staphylococcus felis strain F7 k127_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5235 36 100.0 29 .................................... AATATTTTCATAGCATCGCTTCTCCTTGA 5170 36 100.0 30 .................................... GACATTCAATCTCTTTTCATACGAAGAGTT 5104 36 100.0 30 .................................... ATTAATCCAATTACCTAAAGGGTTAATCGT 5038 36 100.0 30 .................................... TAACCAGTCACGTTCTTTTCGCCTTTTTGT 4972 36 100.0 30 .................................... ATAAGGCCACGAAACCATTGCACCAACTTT 4906 36 100.0 30 .................................... AGATGCAAGCGAAGCATACACCTTTATTCG 4840 36 100.0 30 .................................... CCATCATTTTTATAATAATACTTTTTACGT 4774 36 97.2 30 ............C....................... ATATTAAAGACATATTGCAGAAAGTGAAAG 4708 36 97.2 29 .........................A.......... AATGGTACTAAAAAGAAAGGGAACGTATT 4643 36 94.4 29 ............C............A.......... TTTGGTTTTTTAACAGAACTGAGCAAGAA 4578 36 97.2 29 .........................A.......... TGAAGAAATCGAACAATTAAAATCTGAAA 4513 36 97.2 30 .........................A.......... TGATCCAGGGAAAGGTAACTTATACACGGC 4447 36 94.4 30 ..............G..........A.......... ATGATGTACGTACCATGTACATTGTCCCCA 4381 36 86.1 0 ........G................T....C.T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 97.4 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : TA # Right flank : ATTTTTTTCTGAATTTTTAGATATAATGATGATACTGGAATGACCAACTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGACAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACGCGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTACATGACGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1313-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXO01000107.1 Staphylococcus felis strain F7 k127_216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1312 36 86.1 29 ..........CGC......A.....A.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 1247 36 97.2 29 A................................... GTATGTACGATATTGTTTCAGTGGACAAC 1182 36 94.4 30 ..............G..........A.......... TTTTGGTACTGTGTTTAGTCAACAAATTAA 1116 36 94.4 30 ........G................A.......... TTGTAGACTGCACTGTAGGTACGTCAGCAC 1050 36 100.0 29 .................................... TTTTGAAGATTTACCAGTAAGGACTTTAA 985 36 100.0 29 .................................... GTACCACTAAAGCTTTCGTCTTTCATGTT 920 36 94.4 30 ........G................A.......... AATGCTAATGTTAAAGAAGCAGACCTTACT 854 36 100.0 29 .................................... CCTGACTCTAGACGAATGATACTTAAAGC 789 36 94.4 29 ...................A.....A.......... GGTGCAGTCATATCATCTCGTGAATTAAA 724 36 94.4 30 ............C................A...... TGTCTAACGGAAAAATCAATGAGGATACAA 658 36 97.2 30 .............................T...... GATAATACTCGTCACAACATTAGCGTTACA 592 36 100.0 30 .................................... GGTTACATTGCCTAAATATATGGTTGTGTT 526 36 97.2 30 ..............G..................... TTCAGTATTATCGTTACCACCATTAACACG 460 36 94.4 30 ..............T..........A.......... CGAGAGATGATATGACTCCACCTGCTCTGC 394 36 94.4 30 ........G......................G.... TCCATAATCTCCGAATTCTGACACAATACT 328 36 86.1 30 ........GT...............AT........T TAGTAATCCTGGGCACGTTGCAATAGTGGT 262 36 97.2 30 ..............G..................... AATGAAAGAGAAAGCATTTTCCCTGAAAGT 196 36 97.2 29 ..............G..................... AGCAGGTCAACAGTTAGTCGTATAATCAA 131 36 97.2 29 ........G........................... CTTCCGAAATTGAATGTTGGTACATGGTT 66 36 94.4 0 ............C............A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 95.5 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCAATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTATACAATTGATTAAAAGTTATCAACTCACAACCATCATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATATTTTGAGTTTATTAATGATTATAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : CCATAATTATTTTTGTTGGTGTATACTAAAG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [12-12] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //