Array 1 346-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000041.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 345 33 100.0 34 ................................. GCGAACGGCGCCGTACCCGCGGGCATGCTCGGCA 278 33 100.0 35 ................................. TGAGTGAGTCGTTCGGCGTGGACATGGGGGCNNNN 210 33 81.8 35 NNNNNN........................... CTCAACTGGGTTTCGGGTACGAGCCGGATGCGTAT 142 33 100.0 35 ................................. GTCAAAAGCGTGTTTGCCCTGCAGTATACAACAGG 74 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 96.4 35 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : CCCCTCACGGGGTGCGTGGATTGAAATCAGTGCGCGACCCTGTATCTGGCGATTCTCATGTAGTCGCACCCCTCACGGGGGTGCGTGGATTGAAATCGAATTACACCGGTCATTTGGCACAGTGCAANNNNNNNNNNCCCTCACGGGGTGCGTGGATTGAAATCACGTCCGCGTGGACAAGGCGGTCGGGGACAC # Right flank : TACGTAGGGATTGCGAACTATCCCGAACTTATGNNNNNNNNN # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 631-117 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000042.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================== ================== 630 33 100.0 36 ................................. GCGTTGAGGTTTTGGCCGTCTACGGTTTTGTTGGTG 561 33 100.0 34 ................................. CGTTGACGACAGCGCGGCTTATCGCATCCTCGCC 494 33 100.0 30 ................................. AACTCGACGTGTGGACGACCTACTCCATNN 431 33 75.8 34 NNNNNNNN......................... ACCATCGCGGGTCACATACCAGCCCGGGTGGGTC 364 33 100.0 47 ................................. CACCAGTTCGAGCCTCCCCTGATCGTGCCCNNNNNNNNNNNNNNNNN 284 33 84.8 35 NNNNN............................ ATCTAAAGGGAGACACCACAATGGAGATCACCACA 216 33 100.0 34 ................................. GCGAGTCTGCCCGGCAGTATCAAGACGCTGATCG 149 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =============================================== ================== 8 33 95.1 36 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : CCCTCACGGGGTGCGTGGATTGAAATTCAAAAATCGACTTGATGCCGTTGAGTATGTNNNNNNNNNNCCCCTCACGGGGTGCGTGGATTGAAATTGGGCCGAGGGTACACCGGCCAGCAAGGGCAGCTAGTCGCACCCCTCACGGGGTGTGTGGATTGAAATATCTTCCGCGGCCTGCATAACAATCTCGANNNNNNNNNNCCCCTCACGGGGTGCGTGGATTGAAATTGTGTACTACTCTATTCCCCTCCGGCCGTCTGGT # Right flank : TGCGTCGGCTGGCATCCGGTTGGGTGCCTACCNNNNNNNNNNACCCCTCACGGGGTGCGTGGATTGAAATACAGGACATCCAGATGCCCAACGCGCTGATCGNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 625-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000043.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 624 25 75.8 34 --------......................... TCTCGCCCGGATAGATAAGTGCGGGATTGCCCGA 565 33 100.0 28 ................................. TGGAAGAGGTCGAGGTCCGTTTGGGCGA 504 33 69.7 35 .NNNNNNNNNN...................... CACCAGTTAGAGCCGCCCTTGATGGTGCCGGTATA 436 33 100.0 35 ................................. TTGGCGCGGCCGACTGGCTGGTCAGCGCTGGNNNN 368 33 81.8 34 NNNNNN........................... TGTCGCTTCGGTGTCCTCGATGTAGGTGCGCCCG 301 33 100.0 35 ................................. GCCGCGGTCCATGGGCGCGAGGTGGATGCTCACGT 233 33 100.0 34 ................................. TCAATGTTCACATCGCAGCCGTCGTAGGCATCGA 166 33 100.0 34 ................................. TCGATCCTGTCCAAGATATGCGCGTACTACAAGG 99 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 9 33 91.9 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TCGAAATCTCAAGGGAGAGCGGGGAGCGCAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20166-20005 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000040.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 20165 25 75.8 35 --------......................... TGGTCAATTATTTCGACGCCGACATCATCAAAGCG 20105 33 100.0 35 ................................. AGGCCGGCGGCCTTGAGTTTCGGCCACACCGAACG 20037 33 93.9 0 ....C...........................A | ========== ====== ====== ====== ================================= =================================== ================== 3 33 89.9 36 GTCGTACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TGAAGCGCTGCTGAAGGAAGTCAAGGCCGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTGATCCCGATCTCGATCCGGACCCGGACCCCGACACTCCCGGTACGGATGACCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGGCAACAAGCCCGGTGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGCGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGAGCTGAACATGACCGGTGCTGGAGAGTCCGATGCTCTCCGGCACCGGTCATATGTCGAACTCCTGCATAGGGTACCTTAAATCAGCCTGATCTGATAGACTGTCTGCGGGAATCTGAACACTTGGCGGAACGA # Questionable array : NO Score: 8.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.50, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 361-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000044.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 360 27 81.8 34 ------........................... GTCTTCCGCGGACTCCATAACAATCTCGACTCTA 299 33 100.0 36 ................................. TGCTTATCACGCTCTTGGTGGCAATGGCGTCGGCTC 230 33 100.0 34 ................................. CACGAAAATATCAGGGTTGATGCTGGCTTGCGTA 163 33 100.0 33 ................................. TGCTTATCACGCTCTTGGTGGCAATGGCGTCGG 97 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 96.4 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TGCTTTTTACGACCCCCGTGTCTACGGCATCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 334-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000046.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 333 28 84.8 32 -----............................ AATACTCACCGGACGCCCGGCCTGCACATANN 273 33 75.8 36 NNNNNNNN......................... TCGCGGCTGGCCTCCACGCTGCACTTGCGCACNNNN 204 33 81.8 38 NNNNNN........................... GACAAGCACGGGCAACAGGCATTTAGCAAGGCCGTCAA 133 33 100.0 34 ................................. CAAAGTCTCGCCGCGTCGCTCGGCCCGGTCTTTA 66 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 5 33 88.5 35 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TCAGCCCGCGGCCGACGAATTTGCCCGTGTCNNN # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.42, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 494-66 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000047.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 493 27 81.8 33 ------........................... TTGCTCCATGCCAGCATCTGCTTGCTGGAGTCC 433 33 100.0 32 ................................. ATTTTTTGCTTTGTATGCCATATGCCCATATT 368 33 100.0 37 ................................. GGTTCGAATTTTGCCACGAACCCGTCGTAGTNNNNNN 298 33 87.9 34 NNNN............................. TACATGCATGTCGTATGCGAGACAACCACAAGAC 231 33 100.0 34 ................................. TCGAGTTGCTCGGTGTTAAACGACCCCTTGCNNN 164 33 78.8 33 NNNNNNN.......................... AGGCGGTCGTGTCCTTGAGAGCCGCGATNNNNN 98 33 84.8 0 NNNNN............................ | ========== ====== ====== ====== ================================= ===================================== ================== 7 33 90.5 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TCGGCTGCATGATCTCACGCACGCCGAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.53, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 692-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000048.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================ ================== 691 33 84.8 33 NNNNN............................ CCCACCGAGCAGCCGAACTTCGAGACCATNNNN 625 33 81.8 34 NNNNNN........................... GACTCACGGTCGAAACGCGAAAACTGATAAACCG 558 33 100.0 34 ................................. GACCATGTTGCACCTGTATCACGATGAGACGCCG 491 33 100.0 35 ................................. AAGCCGATACCCGCCAACAGAGGTCCGGTAATATC 423 33 100.0 37 ................................. CTCCGCGCAATCGCCACTGGCATACTCACCCANNNNN 353 33 84.8 48 NNNNN............................ GCAAACGGCGCGGTCCCCGCCGGCATGCTCGGCNNNNNNNNNNNNNNN 272 33 84.8 34 NNNNN............................ ATAATCACCTCTTAAGTAGATGGCACGGCAACAA 205 33 100.0 35 ................................. AGGGAATATGAATCTCATCTACCCCGGAGAAATAC 137 33 100.0 33 ................................. TTCTGTGATTTAAGCGCGTGTATTTTCTCTTTT 71 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================================ ================== 10 33 93.6 36 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : CCCCTCACGGGGTGCGTGGATTGAAATTCGGCCATCTCCTTGACCGGCACGCCCAGATCGNNNN # Right flank : TCCGCGTATCAGTGTGCTGGTGCGCAAGCAGNNNNNNNN # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NNNNNACCCCTCACGGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 673-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKNT010000049.1 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 isolate Bifidobacterium_bifidum_MC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 672 33 100.0 33 ................................. CCTACGACGAATTTGTATCCGGGTCGCATCATC 606 33 100.0 34 ................................. CGCGAAACCGTGCCCCGCACGCATGATGTCAACT 539 33 100.0 34 ................................. ACTATATCACGGAGTGTGGATAACGGTAGATGTC 472 33 100.0 37 ................................. GTTGATATTCGACTCGTTGGTTTTCGCCAACGTCANN 402 33 75.8 33 NNNNNNNN......................... ACCATGTCCGGGAGCTGCTGCACGACGGCGCCA 336 33 100.0 35 ................................. ACCGGATTGATCTGCTGAGTCATCTCATTGATAAC 268 33 100.0 36 ................................. CAGATCGTCGTAGAGGCTCGTGAGTGGATTGNNNNN 199 33 84.8 32 NNNNN............................ CTGAGCAATCTGGTCAACACGCTTGCATCCNN 134 33 75.8 34 NNNNNNNN......................... TGGTCGGACGCGCTGCAACCCGGCCTCGACCTCG 67 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 10 33 93.6 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : GCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGTCTGCGGTACTACAATCTCGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATACGGCATTCGGCGGACTGGCGCGGTGTACGACGTGCGGAGGCTACGACGTACGGAGGTCGGCCGGTGCGAGCCCTGAGCTCTCATGAAGCACTGGGTCGTTCGCACCACGGTTCATGGCTTTTGAGGACGGTGTGTGTTCTTCTCGTCGTTTGATAACTCAAGAGTGAGTGATTTGCTGGCATATCGATTCAGCGGATTCGCGTATCAGGGAAAATGCGGGTGGATCGTACGGTATAATTGATGTCGTGAGATGGGTGGAGTGTCCATATTTTGAGATATGAAGTCCATTCTTGCG # Right flank : TTGCGCGTCTCTGTATCGCCGGGCTATCGTGNNNN # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NNNNNNNNCCTCACGGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //