Array 1 29169-27555 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFV01000010.1 Vibrio cholerae strain N2724 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29168 28 100.0 33 ............................ TTTATGAAAGCACGGGGAGAAAAGCGGTTGAGC 29107 28 100.0 33 ............................ TTTCCCCTCGTTAAACCTTTTTCCAAGTAGCTA 29046 28 100.0 33 ............................ TCAATGAGCCAGTAAAAACCGAAACTTCAAGCT 28985 28 100.0 33 ............................ CAAAGTCATCTCTGGGGCAGCACCAAACTTGGT 28924 28 100.0 33 ............................ TCTTGGCATTGGTCGAAACTGTCTGCGCCAAGT 28863 28 100.0 33 ............................ TTTTGATGCCTCTCGTGTAGTCCCAACTGCCGA 28802 28 100.0 33 ............................ CCCAATGATGCTCGATTTGTGCAAGCTCTTGAG 28741 28 100.0 33 ............................ TTTAAGCGGCCTTGGCATCCTGTTCTCGATGGT 28680 28 100.0 33 ............................ TTGACTGGCTAAATCGTTGCCCTAAATGCGACG 28619 28 100.0 33 ............................ TGGGAGGTACCTTTATATCTGTAGCAAAGCGAA 28558 28 100.0 33 ............................ TGGATTGGTTTTCTAACTTACGTGGCAGGTATT 28497 28 100.0 33 ............................ CTGCAGGTTTGCATCATCAAAGTCATGAATGAC 28436 28 100.0 33 ............................ CAGAGCCCGCAGTGATGCGGGTTTTTCTTTGGG 28375 28 100.0 33 ............................ TGGCAAAAGCATTCGGCTCTAAAGATATGAAAA 28314 28 100.0 33 ............................ CTTGGAGACAGCAGAGCGACACGGTCTTTCGGT 28253 28 100.0 33 ............................ CAGGGACTATCTGTGGTTCGGCACCTCGGTTGA 28192 28 100.0 33 ............................ TCGACTACCAAGCCCGCCTGTTAGGTATTGAAG 28131 28 100.0 33 ............................ TGACCCGAGAAGCTAAACTCATCTTGCGTTTGT 28070 28 100.0 33 ............................ CAGATAGAAGCTGACACGCTCTATAAGTTGGAA 28009 28 100.0 33 ............................ TGGTACAACCACATCAGCATGCCGTTTAACGAC 27948 28 100.0 33 ............................ TGATGATGTGCTCGATACGTTAGATCCAGGTCA 27887 28 100.0 33 ............................ CCACCATCATTAGCTTGGCCAGTTCTATGTCGT 27826 28 100.0 33 ............................ TTAAGCGGCTTTTAGCTCACCCGTAACAAATGC 27765 28 100.0 33 ............................ TGAGCGGACTTGATTCACCAGCTCAGGCACAGG 27704 28 96.4 33 ...........................T GTCGTTCGACTTTGCAAGTTCTTTGGAGATGGG 27643 28 100.0 33 ............................ CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 27582 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.8 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //