Array 1 316560-317384 **** Predicted by CRISPRDetect 2.4 *** >NC_019751.1 Calothrix sp. PCC 6303, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 316560 35 100.0 36 ................................... GAAACTGCTTCTGCTGATTGAGTTAAAAAGGATTTT 316631 35 100.0 40 ................................... CTCTGTACCTCTCCCCTGTATCGTTGCGCATAGATTGCGA 316706 35 100.0 37 ................................... TAGATATTTTCTCTATTTCACGACCATCTTTTTTAAT 316778 35 100.0 36 ................................... TTGAAGTTTCCGTCTGTTACAAAATCATCTAAATTG 316849 35 100.0 37 ................................... GAGGATAAATTTAAAAAGAATGAAGTCGATACGATCA 316921 35 100.0 35 ................................... GAAATGGATAATTTTTGACCGAATACCACTTTTCT 316991 35 100.0 37 ................................... TATATGATTCGCTGCTAAAGTATTTTTCAACCTTCTT 317063 35 100.0 35 ................................... TTTTTACTCTTTCAAAATAAGAGTCAAAATTTTTT 317133 35 100.0 38 ................................... AGTAGCACAATCCCATTCAGTAATTGCACATACTTTTC 317206 35 100.0 37 ................................... ATTGTTTGCCACATATTCTGAAAATAAAACACGAGTT 317278 35 100.0 37 ................................... ACATTTAACAAATTATTTTGTCAAATCTGAAAAATCA 317350 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 12 35 100.0 37 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : ATGGAGGAATTTCGCGCTCAAATTGTTGATTCTTTTGTGAGTTACATTGTGAATAAAAAAATATTAACTCCTGAAGATTTTACTTCTCCTGATGAACGGGGAGGTGTATATTTGCAAGCAAGTGCGTTGAAGAAGTATCTGAAGCATTGGGAGGAGAAGTTACAGTCTGAGACTACGCATCCAAATACTGGTTATAAGGTAGCTTATCGTCGTTGTATTGAGTTACAAGTGCGCGAATATGTTGCTTGTTTGGTAGGTGAGGTTGAAGTTTATCGTCCGATGACTTGGAAAATGTAGTCTATGATACTGTTTGTGGGATAGAGACAATGGCTGAAACCCTCATTCTCTCGTTCTATCCCACAAATCGCTATCCAGGTAAGGGTTTGATGCTTCTTGAATATGGATTAATTACTAAGAATTATCAATTATTTAGGAAAAATTTTACACCCCACAAAAAATGGCGGTAGAGTAGTTGCTAGGCAAGGCTTTCAAAGGCTAGC # Right flank : CATAGATTAAGATCCTCGATGTTAAAAAGTCGAGGATATTTTCGTTTGCCAGATATTTGGGTTTGAAAAATATCGTAAATATGAGAATCCTACTAATGATTAATTAAAAGTCAGATAACTCATATACAAACTCATATAAAAATAGCCTTTACTCCGATACATACTCATATAGACTTTTGGGAAGATGGAGATAAGTAAAAGATAAAAAGCTAAAAGGACATTCGGCAAAGCTCAGTCGAGCCACAAAAGAAAAAGTCTTCATACTTTTATTTTTTACCTCACACTTTTACTTCACCAAACCTATGTCTACAATTTATATCACCGAACCAGATGCATCCTTCAAACTACAAAATAAGTATCTGAAGTTACTCCAACAAGATAAACAACGCTTTTTCATCCGCATTAGTAACATTAGCCAATTCGCCATTTTTGGTAACATCAAACTACCAAAAGATGTCATGCAAATAGTTCGTTTAAATCAAATCCCCGCCATCTACTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 324319-325428 **** Predicted by CRISPRDetect 2.4 *** >NC_019751.1 Calothrix sp. PCC 6303, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 324319 35 100.0 39 ................................... TAGGAAGTTTTCGCTTGGGTATTGCTTAATTTAGCAGAG 324393 35 100.0 35 ................................... TATTTAAGGCTATATCGCTTCTAAATTGAGAGACA 324463 35 100.0 44 ................................... AAGACAGAGATATGTCCTCAAAGAGAAATGAGTTTGTCTCAATT 324542 35 100.0 36 ................................... TTTTATCTGCTTTTGTAAACTCTCCCCAATGCAAAG 324613 35 100.0 36 ................................... ACTGGTTTGCCGCTTGAGTGGGCATAGTCAAAAAAT 324684 35 100.0 36 ................................... AGTTTGAGTCTCGGTCTCGGTCTCGGTCTCGGTCTC 324755 35 100.0 39 ................................... TTTACACGATTCTGGAACGTTACTAACATCCCATCAGGA 324829 35 100.0 35 ................................... TCGTTGAGTTGGTACACCAGCTGACTCTCAATTTG 324899 35 100.0 36 ................................... ATTAGGGTCTCTGTAGATCTTAAATTCCTCAGAGTA 324970 35 100.0 35 ................................... GAATGAAAAGATTTTTACATCTTTTGCTGATAAAA 325040 35 100.0 36 ................................... GTGTAAGTCACGGAATTTTCGGTTGAACTAACTAAT 325111 35 100.0 35 ................................... CTTTGATGTAAGAAAACTCATCACTAGCAAAAAAA 325181 35 100.0 38 ................................... GGGGCTCTTAGCTCTGCCCGTAATTCGTCGCGGGACTT 325254 35 100.0 36 ................................... GTGTCGCTGCTTTCAACTTCTGCTGCACAAACTACG 325325 35 100.0 34 ................................... CTGAATTTTGTTATTCTAACCTCCACTCCACATG 325394 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 16 35 100.0 37 CTTTAGACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : TGCTACACTCAAAAACTCAGTCATTATTCAAATTACTACAAAAGGGGGATGAAGGGGCTGCCGTCGGCAGCCCCTTCATCCCCCTTTAAAATGATTATCATTATTTCCAATGGAATAGTTTATTTTCTGGAAGTCCCTTAAGCATTGGGAGGAAAAGTTACAAACCGAGACGACATACCCACACACAGGACATAAGGTAGCATATCGTCGTTGTATGGAGTTGCTCCCGTGCGGGAGTATGTTGCTTGTTTGATGGGTGAGGTGAAGGTTTACCGTTCAATGATTTGTAAACTGTAGCCTAGTATACTGTTTGTGGGATAGACGCAATGGCTGAAACCCTTATTCTCTCGTTTTATCCCACAAATCGCTCTCTATATATGGGTTTGATACTTTTTGATTGTAGGTTAACTGCTAAGTATTATCAATTATTTAGGAAAAATTTTGCATCCCACAAAAAATGCCTGTAGAATAGCAACTAGACAAGGCTTTCAAAGACTAGC # Right flank : CAAGGAATTCCGTAGTCAGTGAACTGGGCTTTTTGACTTTAGACTACAAAAGTATAAATAATTTTGCGTAAGGACTTCCAGGAAATAGGTATAAATTGTCATTCTGAGTGAAGTCTTACGAAACGAATAATCTTGCGTTTCATGCGTATTTTGAGATGCTGAGTCCCAAGGGGACACGCTACGCGTAGTTTACTTCTCCGCTTCGGAGTACGTGCCTCAGCATGACATGTCAGGGTACTTTTCAAACATGCTCTAACTACTTAGTAAAGATAGAAATAAATAGTCATAATAAAATTGGTTTAAATACAATCTTTATAGAGAATCAAGCTTTTATCAAAAGGGAAAGGCTTTTGTTCTTTCCCCTTTTTTTATTGCTTATTACTTGTTACTTATTATTTTTTTGTGTCATAAACTTGAACAATCCCGCTACCAATTCCTTTTACTTTCTCTACCAACTCAATTGGTTCTATTACCTTCACATTTCCGCCAAATCCAACAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 328874-328043 **** Predicted by CRISPRDetect 2.4 *** >NC_019751.1 Calothrix sp. PCC 6303, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 328873 37 100.0 37 ..................................... CCTTGGTAAGCTCAATTTATAATCAACTGCTTTGTTG 328799 37 100.0 35 ..................................... TCATTTCCTTTATAATCCTTAGCCGTTACCTTAAG 328727 37 100.0 33 ..................................... TCAAAGCAACCTATTATTACATTACATGGATAA 328657 37 100.0 37 ..................................... TTTTATGTAGATGATCCAGTTTCCAAGGGTGATATTG 328583 37 100.0 36 ..................................... ACAACACAACTTATCAGCATCTTAAGTGGCAAGAAA 328510 37 100.0 35 ..................................... AAGTACAAACGGCAAATAAATTTTCCAACTCTGAA 328438 37 100.0 34 ..................................... GCATCTGAGCTTCGTTGCTAGCCAGTTGATTTTG 328367 37 97.3 35 ..............C...................... CCTTCGATACAGATGATGAGGTGGATGAATTCAAT 328295 37 97.3 35 ..............C...................... TAAATAAGGAAGATTTATCCCGCTAGGTTGATTAT 328223 37 97.3 33 ..............C...................... GCAATTTGGGTAGAAACACCAAGGTTTGTAATC 328153 37 97.3 37 ..............C...................... TATTCTTGGATGGTTTCGGGTTTAAATTCAGCCGCTT 328079 37 94.6 0 ..............C.....................T | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 98.6 35 GTTTCAAAGCTTCTTTTGAAGCTGAATTAATGGAAAC # Left flank : ATTTATACATCAAGTTACTTAAGTTGTGGTTGCTCTTTTCTATCTTGTTTTGAAATGCTTTATTTTGCTATACTTTCCATGCGAATGACGAATTATACTGAATGTATCTAAATTTCTGGCGCGATCGCATTTCCCTGTTATATTACATTTCCGAAAGCGATCGCACTTGTAAATATCTATCAAGTGGTACTCCCAGAGTCGGTGTTAGCTACCATGACATTTCTCGAAAAATATCGAAAAGTACCCTATTTTTGGCAAACCGAAGCGGGGTTTTACAAGTGATAGGATTTTGGGAGTTGAAACCTTTGTCTGTAAAAGCTTTCAGCTATTTTAGTCTCAAAGGAGGTCTGCCAAACTTCTGAAATACTCTCTGGGCTTGGTTTTGCGGTTATTGGGTTGAAGGATTCTCTTGACAAGCGATGCCTGAAACGGTACTTTTAGTTGAGGTCTGCCAAAAGGCTTCCTGGAAAGCTTATTTTATAAGGGTTCCAGATGCCGGG # Right flank : AAAACACGTTTTAAACAAAAACATTAATTCGTCATTCGCATCAAGAATATCGACAGATAGAAATGCAGGACATAGGATAGAAACATCAGTAAAATACCTCTGACAAATTTTTCTCCTTAACAAACCCCAATGTCCGCATTGAATATCTGTCACTTCCTTATTGGTGTTCCTGGTAGCGGTAAATCCACCTTCGCTGCTGCATTAGCAAAACTCGGTAACAATGTCATCATCTCCACTGACGAAATTCGTACCACACTCTACGGAGACGCAGCAATTCAAGGAAACTGGAACGAAATTGAAAACCAAGCACTTCTTTTAATTCAACAAGCACAAACATCAAAAAAAAGTGTCATTTACGACGCAACCAACTTCAAACGTGCTTTCCGCATGGATTTTTTAATGAAAATTAAAGAGGATGGGGAAACCCTACCCCTACGTTGGATTGCATGGTACTTAAAAACACCCATCGAAACCTGTATTAAATGGAACCAAAACCGTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAAGCTTCTTTTGAAGCTGAATTAATGGAAAC # Alternate repeat : GTTTCAAAGCTTCTCTTGAAGCTGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 1621155-1621703 **** Predicted by CRISPRDetect 2.4 *** >NC_019751.1 Calothrix sp. PCC 6303, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1621155 37 100.0 36 ..................................... GTATCAAATTCGACTCTAATGGTTATCAAGTGATTG 1621228 37 100.0 34 ..................................... CCTAAGTCTGGGCGGGTTGATATTCCTACTGATT 1621299 37 100.0 37 ..................................... TTAACGTTGGATATATTGGAGATTTTTGCACTGCCGT 1621373 37 100.0 35 ..................................... TCGTCTTTAATTTTTTCTAGGGAAACTTGAAACTC 1621445 37 100.0 40 ..................................... AAGCCTAGCTTTGTAGGAGCAAAAAATGAACCAACATGAA 1621522 37 100.0 35 ..................................... CTGCAACCGCAAATATTCGTCCTCATATAACACTA 1621594 37 100.0 36 ..................................... ACGGTTAGACTTGCTTGGATACGTTAGCGATCGCAT 1621667 37 83.8 0 .....G..AG....T...T......A........... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 98.0 36 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : TAAATCTGGGTTAGTTTGACGGTTGGAAAACCGTCTTGCTTTCTGACCCTGGTAGCTGCCCGCTCTTGATGCTGCTGTCTGCTTTGACTAGACAGGATATGCCTTTTTTGCAATTTAGTTGGATAAACAGTTTTTTATGTTTTTAGCGACAGTGAAAAACTTTTATACAAGTATATCAAATAGGGACAGGTGCGCTCCCAGCAATAAAGAGTACAGATGCAAATCTGGAGCCGTTTTATTACGGTGGGGATTACCTCAGCGGTGGTTACTGAATCACCCCCTTCGTCGGGGGAACCCTCTCAAATCTTTTTTTGGCGCGTCGAAGCGGGGGCAAAATCCCTGGACTCCCGCCAAAATCTCAAAACTCTTGCCCTGTATTAATTTGAAGGAACTGAGTATCAATTGATTTAGTTTTTTCATTTTCAAGTGGAGATGCTTTTAGGTAGTCCTGACAAATGTGCAGTTTAAAAGCTTCAATAGTAAGGGTTTCAGACGGTCGG # Right flank : GTCTTGAAAATCTAAGAGCAACTACACTATAGATTTATTTAGAGGGTTGAAAGGAGCATCAGACTCTTAATTTAAGTGATAGAGATAATATTTAAGCACAGATATATTTCTTACTCAGCAATAGCATTTAGTATTTGCATGGAAATAAATAGCTTTGAGACAACATTAATTTGTTAACGATGTCTTTGAGGATTTAGGGGACATCAATTTGTTAAAAAAGACATTAATTTTGTTAACGACGACAAATTATTTGTAATCGACTTTAGGACAAATAATTTGTCGCTTTATGTACTTTGACAAATAATGTGTCGCTCTACATCAGTTAATCGACAATAACCAAGCGACGTTAATTTGCGAAAACCTATAATCATCAATATAGTACACAAATCTGTCGAAAGCGACACTAATTTGCTAATAACGACACTAATGTGCGAAAAGCGACATTTAATGTGCGAAAGTACAAATGTACAAAATGGGCGACCTGGGGCTCGAACCCAGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 2021864-2022696 **** Predicted by CRISPRDetect 2.4 *** >NC_019751.1 Calothrix sp. PCC 6303, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2021864 37 100.0 33 ..................................... AGTTGCTTTTCCTGATAAAGATTGCCCGGAAAA 2021934 37 100.0 35 ..................................... CTTACTCAGCAGGAAGATATCAGCAACTGAATGAC 2022006 37 100.0 34 ..................................... CAACCCCTAAGAGTGAGCGCCAAAGAATTCTAGC 2022077 37 100.0 36 ..................................... AACGAAAATCTAGATGATTTTAGGGCTAATTTTGCT 2022150 37 100.0 42 ..................................... AGTTAGCGCAGAAACCAGGCAGCAAGCAATCAGGCAATTCTT 2022229 37 97.3 34 ............C........................ ATCTGGGCTATGACGAGTTAACTCATTTCACGAA 2022300 37 97.3 33 ............C........................ TCATAACGGTGCAACTTGGGGGATAAATAATGA 2022370 37 97.3 36 ............C........................ AAAGAAGTATAAGTCTGAATAAGTCTGAATATCCCT 2022443 37 97.3 37 ............C........................ CCTTTGATTAGCTATCAACCTGGCGACAAGGCTGTAG 2022517 37 97.3 34 ............C........................ TTGATAATAGTATTCTGAATACTCTGGTGTAATT 2022588 37 100.0 35 ..................................... AGTAACCATTCGTTCGCGGAATCTTTACCCATACT 2022660 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 12 37 98.9 35 GTTCCTATAAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TTAACTTAAACAAGATTTGGACAGGAAATAAAAATTTATTGAAATTTCAAGGAGCAGTAATTGCTCCTCAAATTTTTAGTGCTTACGTAATCTATTTTATGGGTCAATCTTTTTGTCTTTGATTATTTATTTTTAAAAGTATATTCATTCAGCATTCTATTTCTTCATCATCCTGACTTTTTACTTTTTCCTTACTTGTAATCTTTTTGTACTTCAAATTGAAGTGCGGAATGTGGGTTACAAACAAACGTTGGTGCGAACCTGAGGGTGTAGAAAAATGGTGAGCCTTTTTTCCGCTTGTATTGCTTATGCTATGTGGGTTTGAGGGTTTTCTATTTCTTAATTGGTTCGCACCGTTGCTGAAAGTATTGCTCTGTAGGCTTTTTGCAGTTTTATGTGCCGCAATAGTTGACAGGCTAGTGGCTGAAACGTTATTTTAAATGAGGTTCTCACTTTTGCACCTTGAAAACTAAATAGAGTAAGGGTTGTATCTCAAAGCG # Right flank : CCCAGCACGAGTGCGATCGCCGATTGCGATCGCGTTCCTATAAAGTAAAATTCCTAAGCCATATCGTATAGTGTGCAAAGAATTGATAATTTTTGCTTCATGCGATCGCGCAAATTATCTGGCGATACAATTACACAATCTTCCCCATACTTTAATATTTCCCGAATCAACCAAAACGGATTCGATACCTTTCGCTCAACTTGACGCACATCTCCTATAACTTCGTTGCTAATATCATTTGCTTTAGTTTCGTAGCCTTTGATCATTCCTCTAAAAAAGTGTAAGTACACTTTTAGGTAATCTAAACCTTCCTGTCGCCATTGTCCGTTCACTGGCACAACACCCTTAACTCGATCTAGACGCAAACAGCGATTGTGGATGAGTTCTGGAAAATCAGTATCTTTGATGTCTTCAGTCTCGTCACACCAAATATCTAAGTAAAAGCGTTTCTCTTCAAAAGAAATTTCCGCATAACGTACTGTATAGGATAAATCCTCTCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTATAAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : GTTCCTATAAACCAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 6 2038085-2039287 **** Predicted by CRISPRDetect 2.4 *** >NC_019751.1 Calothrix sp. PCC 6303, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2038085 37 100.0 35 ..................................... AGATATACGCTCAATCATCATCATAATTTCCTTTT 2038157 37 100.0 40 ..................................... ATTTTAAAGCAGGCGCTAGAATTAGCAGAAGCAAAATCAC 2038234 37 100.0 34 ..................................... TCAAACCTTAAATCGGTTGCTATCAGCATATATT 2038305 37 100.0 35 ..................................... CTAGTAGGAACTACCAACGAGTCGGAAATTTTAAA 2038377 37 100.0 35 ..................................... TTAGCGAATGTGACCGAAGAATTGAGCGACGAACT 2038449 37 100.0 37 ..................................... CAACTAAATCCCCAATCATCCTGTTTTGTTGTTGGGT 2038523 37 100.0 34 ..................................... GCGTCCTCAATAACTTTTGTAAATGCGGCTTTTT 2038594 37 100.0 34 ..................................... CTCTGGTCGCTACCTGGCGCTGCGCGCCAGGTCA 2038665 37 100.0 36 ..................................... CTAAAACCTTTTTAGGTCAAGCCGTTACAGGACTTA 2038738 37 100.0 38 ..................................... ATATGCGATCGCGCCAAATCTCAAAGTAGGATCTTCAC 2038813 37 100.0 36 ..................................... CAAGCTTTGTACAACTTCAAGAAAAATCAAATAGTT 2038886 37 100.0 36 ..................................... GGACGAAGGCAGCTTCGACGGATTACTAAGTGCATT 2038959 37 100.0 36 ..................................... CGCAGTTACTGTTCCCCTGCGAAAAGTCAACGTGGA 2039032 37 100.0 34 ..................................... CTAATATCTTGATCACATCCTCCACCAATAGCAG 2039103 37 100.0 39 ..................................... CGAGGTATGCAGCTATAGACCCGCTGCGTCCTCTGTTCC 2039179 37 100.0 35 ..................................... CTTTATTCGATGAAATTTTCTGGGCTGAAGGTACT 2039251 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 100.0 36 GTTCCTATAAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AGATAAGCGTCGTACCAAAATTCACAATACTCTCAAATCCTACGGACAGTGGATGCAATATTCTCTCTTTGAGTGCGATTTGACTGATACCCAGTATGCTAAATTGCGATCGCGTCTCTCCAAGCTCATCAAGCCTCAAGAAGATAGCGTGCGGTTTTATTTCCTTTGTGCTTGCTGTAAAGGTAAGGTGGAGCGTATTGGTGGTGAAATGCCCAGGAATGATACAATGTTTTTTATTTGATTCTAGTTTGTTGTGCGAACCTGGGGGTGTAGAAAAATGGTGAGCCTTTTTTCGCCTTGTATTACTTGCGCTATATGCGTTTGAGGGTTTTCTATTTCTTAATCGGTTCGCACGGTTGCTGAAAGTATTGCTCTGTAGGCTTTTTGCAGTTTTATGTGCTGCGATAGTTGACAGGTTAGTGGCTGAAACGTTATTTTAAATGAGGTTCTCACTTTTGTACCTTGAAAACTAAATACAGTAAGGGTTGTATCTCAAAGCG # Right flank : CGACGAGTAAAGCGATCGCATGGTAAAACTAGCTTAAGGCTTACCTGATGCCACACCCAAAACTACACCAACTTTCTCCCGATTAAATTCATTATTTTGTCCGTAACCTGCATCTTCCATTGCTTCTTTAGCAACTACCAAACTCAGAAGTTGGGAGACATCTGTAACTTCTAAAATATTTGGTGGTAGTCCAAATTCCATCGGATTAAAATCAACGTAGGGAATAAAACCACCCCGTTTACAGTAGGTTTTATCTTCGGGTGTTCTGGGATTAGGATCGTAATATTCATCAACATTCCAATGAGAATCGGGGATGTCAGTAATACAGTCAATCTTTTTAATAATATTTTCCCAATATTCCCGCATATTCCGAGATTGGGGTAACAAACTAGCCATCCCTACTATGGCAATGGGATTGTGTTGTAATTTCGTATTCATGGGATTGACTGGTACCGATTTATCTGACATCCGTTTTTTCTCCTCAATATGTTTAATTACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTATAAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //