Array 1 14601-16951 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDOV01000106.1 Listeria monocytogenes strain A147 contig000106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14601 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 14667 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 14733 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 14799 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 14865 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 14931 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 14997 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 15063 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 15129 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 15196 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 15262 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 15328 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 15394 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 15460 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 15526 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 15592 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 15658 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 15724 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 15790 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 15856 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 15922 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 15988 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 16054 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 16120 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 16186 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 16252 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 16318 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 16384 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 16450 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 16516 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 16582 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 16648 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 16715 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 16781 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 16847 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 16913 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [16938,16944,16947] ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 861-2124 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDOV01000182.1 Listeria monocytogenes strain A147 contig000182, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 861 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 927 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 992 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 1056 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 1122 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [1134] 1190 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 1255 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 1320 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 1386 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 1450 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 1515 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 1580 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 1645 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 1708 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 1771 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 1837 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 1900 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 1965 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 2031 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 2096 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTTTGAAATATGAGGACTTAGAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //