Array 1 2444067-2440134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061202.1 Rhodobacter capsulatus strain A12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2444066 29 100.0 32 ............................. CTTCGGACCAACGGCGTCTATTACATGGATGA 2444005 29 100.0 32 ............................. GCAAAGGGCGATAACTTCGCGCGCCAAGTCCT 2443944 29 100.0 32 ............................. ATCCCCGAGAGCATGGCGCGAGTCATGGCGCC 2443883 29 100.0 32 ............................. CGGCATCATGCCGTTGACCCAGGTCGATTTGG 2443822 29 100.0 32 ............................. GCGAAATTGATATTCTCGTCCATGCACCCCGC 2443761 29 100.0 32 ............................. GACGCTGAAAAATGGCTGAACGTGTCACGATC 2443700 29 100.0 32 ............................. CGGCGTTGCGTTATGCGGCAGCAGGTCAGACA 2443639 29 100.0 32 ............................. CCGCCGACCGATGTAGTCGCTTTGCGCAGGGC 2443578 29 100.0 32 ............................. GTCGCGGGTCGCATCATCAACCTCGACACCGA 2443517 29 100.0 32 ............................. CGACCCTCGCGGCGCTGGAAATGGACCAGATC 2443456 29 100.0 32 ............................. GTTTCAGAGTTCATGCTGATATCTCCACATCA 2443395 29 100.0 32 ............................. CATTTGCAAAAGCCGGGGCGATGATCGCCGAA 2443334 29 100.0 32 ............................. ATCTTCGGCGCGCGTGATCGGATATCCAGCGA 2443273 29 100.0 32 ............................. GTCGCGGGTCGCATCATCAACCTCGACACCGA 2443212 29 100.0 32 ............................. GGCCTCGGCGCGTGGGCCGCTGGCGGTGCTGG 2443151 29 100.0 32 ............................. GCCGAGATGGATCAGGGCGCGGTGGTCAACTG 2443090 29 100.0 32 ............................. CGTCATAGTTCCAGAGGGTCCGATACCCCGGA 2443029 29 100.0 32 ............................. GTCGATGTGAAGCCGGGCGACGTGGTGATCTC 2442968 29 100.0 32 ............................. AACCTGCTGCGCTCGACGCGCCGCTGCGGGCC 2442907 29 100.0 32 ............................. ATCGAGATCGATGGTGCGACAATGACCGAATG 2442846 29 100.0 32 ............................. GGGATCCTCGTTCCGGCCGATGTGCTGCGCCG 2442785 29 100.0 32 ............................. GAGCCAAACTGAACATACCCGGTTCCTTTCGG 2442724 29 100.0 32 ............................. ACGAAATGGGTCGGCGCTGGCGGCGAGACTTC 2442663 29 100.0 32 ............................. GAAATCCATCGGGTCGAGACGCGACAGAACGG 2442602 29 100.0 32 ............................. GGGGAAACATGGCCGACGAACTCACGGCAAAA 2442541 29 100.0 32 ............................. GGCGTCAGGGCGCGCTCATGGCCGCTTGGAAT 2442480 29 100.0 32 ............................. CTGTCCGATCGCGTGCGCCGCCTCGAACTGAT 2442419 29 100.0 32 ............................. GCGCTCACGGGTGGTCTGGTCTGATGGACTTT 2442358 29 100.0 32 ............................. GCGCAGCGTTCTCGCGGCGCAGGTTCGCGTTT 2442297 29 100.0 32 ............................. CCCTGTGCCGTAAACGTTGCCTTTCTTGGTGA 2442236 29 100.0 32 ............................. GTTTGGTATGATACAAACATGCCAATTCTCAG 2442175 29 96.6 32 ............................T TACGTTATCACGTTCAGTTAAAACAAATCTAT 2442114 29 100.0 32 ............................. ATGAATTGCTAGTTTTGGCGCTTCGCAAACTA 2442053 29 100.0 32 ............................. CGCAGATCGTGCTCGGCTTCCGCGCGGCGAAC 2441992 29 100.0 32 ............................. ATCGGCACCAACCGCATTCAGCCGCGGCTTGA 2441931 29 100.0 32 ............................. GTGTCGTTGGCCTTGGAAACCGGCACCGGCGT 2441870 29 100.0 32 ............................. TTCCCAGGCCTCGCGCACGCGGCCCGTGGCGT 2441809 29 100.0 32 ............................. GTCGACAGCCTGCAAACCGAGACGCACGGCGC 2441748 29 100.0 32 ............................. CAGAGCCATTTCGTCCCGCGTCAGCGGGTGAG 2441687 29 100.0 32 ............................. GATGCCACTGCATGTTGCGCATGACGCACCTT 2441626 29 100.0 32 ............................. CTTCTGACCACCAAGAAAAGCGGCATTAAGCC 2441565 29 100.0 32 ............................. CCGTAGTGACGCCCCTGCAAGAACATCTTCGA 2441504 29 100.0 32 ............................. GTGATCAGCTTGGAGGCGACCCAGCCCACGGA 2441443 29 100.0 32 ............................. CGACGCGATCACCTGATAGTGCGTCACCGCCG 2441382 29 100.0 32 ............................. ATCACCTCGGCCGTTGCGATTTCCGGCCGCAT 2441321 29 100.0 32 ............................. CCCTGCATGAAACTCGCGTGACGCTGGATAAC 2441260 29 100.0 32 ............................. CTGCGGACGAATGGCGTCTATTACATGGATGA 2441199 29 96.6 32 ............................T CCGGTCGCGCAGGGCTTGCAGCTTGTCGAGGC 2441138 29 100.0 32 ............................. ATTTTCGCCTCGCTCCCGGCGGCGTCGGTGAG 2441077 29 100.0 32 ............................. TTCATTGACGGGGTGGCCCGCGCGGCGGCCGA 2441016 29 100.0 32 ............................. CTGTGGCCAACACGACGCCGCCCGCGGCAATG 2440955 29 100.0 32 ............................. CAGGATCGACGGGTGCGCCTTTGGCCTTGCGA 2440894 29 100.0 32 ............................. CGAGAACGGCTTTTGACCGGCGGCAGTGATGA 2440833 29 100.0 32 ............................. TTCCAGCCGGGCGGCGAACTTGCCGGGCAAAC 2440772 29 100.0 32 ............................. ACGGGAGCGTCGAGCTCCTTGTGATGCAGCCG 2440711 29 100.0 32 ............................. GGGTCCGAGGGCGGGATGCTTTCGCAGACCGT 2440650 29 100.0 32 ............................. CCGAGCGGCTGGCGAAATATCAGGCCGTGGCG 2440589 29 100.0 32 ............................. AGATACTTGCAGACGTAACGGGCGGATTTTTC 2440528 29 100.0 32 ............................. GAAGTTGCCCTGCAGCGCGGCATCAAGGGTGC 2440467 29 100.0 32 ............................. ACGGTGATTTTCCGGGGGCGGCATCGCGCCCT 2440406 29 100.0 32 ............................. AGATACTTGCAGACGTAACGGGCGGATTTTTC 2440345 29 100.0 32 ............................. GAAGTTGCCCTGCAGCGCGGCATCAAGGGTGC 2440284 29 100.0 32 ............................. CCTTAGTATGCAGCGGGGCGCGGTTAAAAGTG 2440223 29 100.0 32 ............................. CCTTGAAGGAAGGGCGCCCCGAGGTCGATTTC 2440162 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.9 32 CTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : CTTCTGGGCCGGATCATTCCCGCCATCGAGGAGGTCCTGACAGCGGGCGAATTGCCCCGCCCCGAGCCGCCGCCCGAGGCGATGCCGGTGGCCTTCGAGGAAGGTCAGTCGGGCGATGCGGGGCATCGGGGATGATGGTCGTGGTGATCTCGAACGCGCCGCCCCGGCTGCGCGGGCGTCTGGCCGCCTGGCTCGTCGAGGTGCGGGCGGGGGTCTATGTCGGCGATTATTCGGCGAAAACCCGAGAGATGATCTGGGAGCAGGTTCTGGCGGGGCTCGAGGCGGGCGATGCGGTGATGGTCTGGAAAGCCCCCACCGATCAGGGCTATGATTTTCGGACCGCAGGCCGAAATCGCCGGATGCCGGTGGATTTCGACGGGCTGAAGCTGGTGAGTTTCAAGCCGGACAGGTGAGGCCGTTCTGAAGCGGAAACCCGGAGAAAATTCGGTGCGCTCTTTGACATTGTGAAAAACTTGGTAGATCAATGGTCTGCAGCAAGA # Right flank : ACCATCGCGAATGTGGCCCCCCTGCGCAACGTCTGTTCGCCGCGTCGCGGATGCCTTTCAGCTCGGCCGCCTGCGCCGTCACCTGCGCCTGCAGCGCGATCAGCGTGTCCTTGCCCGAGACCGCCAGGCGCGCGGCGGCGATCAGCGCATCCCGGTTGCCATCGACGCCGAGGATCGTGCCCAGCTCGGACTGCAGGGCCACATCCTCTTCCGGCTTGCCCTTCGCCCCGGTCATGGCTTCGACCGCGGCGATGATTTCGTCGAGCGTCGCGGTTTCGGCCAGGCCGAGCGCGCGCGCCAGTTTCGTCAGATCCATGTCGGACTCCGAGTTGAGCGCGACGAGGCCGCGCAGGTTGGGGTAATTGACCAGGGACGCCCGCGCGATCCGGCGCACCGTGCCATCGGCGGCGTGGATGATGACGGGCGAGATCCCGCGATACGCGCGCTCGGCCAGCAGCGCGACACCCGCAGGGTTCCATTCGACCTGCCCCCAGACGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3411073-3410835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061202.1 Rhodobacter capsulatus strain A12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 3411072 37 100.0 30 ..................................... GTGACCGTCGCCATCAGAACGCCCCCGTTC 3411005 37 100.0 29 ..................................... AATATCAGTGACCCCCCGACATCAGTTTT 3410939 37 97.3 28 ...........C......................... CCACGGGTTGCTCTCCAGGCCTGTGTTG 3410874 37 86.5 0 ..........GC.................A....G.G | C,AG [3410838,3410841] ========== ====== ====== ====== ===================================== ============================== ================== 4 37 96.0 29 GTCTGGCACCATGTCCGGCGGCCCTGCCGGTTGGCAC # Left flank : TTTGCCCGAATGGCGCAGGATGGCACCCCCTGGACCCCCTACAGGATGAAGCACTGACCATGGCCGACCGTCCGCAATTGCGTCTGATTGTTTACGACATCGCCAGCGACCGGCGCCGCCGCAAGGTGGTGGCGTTGCTCGAGCCACGTGCGGCGCGGGTGCAGGAAAGCGTGTTCGAGGCGCGGCTGAGCCAGGCGCAACTGACCCGCCTGCGCGTCAAGCTGGAGGCGGTGATTGCCCCCGAGGATTCGCTGCGCATCTATACCGTCCCCGATGCCGCCCTGCGCCGCTGCCACATTCAGGGCGGGCCGATGCTGGCAGACGGGGCACGGTTCTGGCTGATTTGATCGCCGGGACCCAGTGGAGTGGCGAAAGTTTATCTATCACAGTGGGTTAGGCAATGTCCGTGGGAATTATGTAATCCGCCTCACAGCGAAATGCCTAACCTAGTGGAAAGTGGCCAAAAAATCCCTTGTTGACAGAGGGCTTCCAGAGGCTCA # Right flank : TGCGTACGGTGATCTGAGGGAAAGGCCCGGCTCAGCCGAGAGCGGCGAGAAGCGCGGGCAAGGGGGGGCTGGCGGCAAGGCCCCAAAATCCGCGCCGGGGCAATTCGCCACCGCGCCAGCCGCCGGGAAAGGCCGCATCGAGCCGCGCGATCCGCGCGCCCGCGCCAAAGAATTGCACCGTATCCGGGCACAGGATCAGAAGATCGCGCCGATCCCCCGCCGCCACCAGCGGATCTGCCACCGTTGCGGTGCGCCCATGCGGCAGGGTGATCACGATCAGACTGCCCGCCAGCGCGGTCTCGGCCTGCGCCAGCGCCGCAAGGCCCTGCGCCTCTTCCTCAGCGGTGATGCCCTGCGCCTGCCGATCGCGGCGGCGGATTTCGGCGATCTCGGCGGTCGTGGCGCCGAACCGCTCCAGCGCCGGAATGTGGCCGATATCATTGGCGGCAACCAGTTCGAAATCCCGCGTCCAAAGGCTTTCGGGCAGATCGAGCAGCGTA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGCACCATGTCCGGCGGCCCTGCCGGTTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //