Array 1 978850-980012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027705.1 Pseudomonas sp. CMR5c chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================= ================== 978850 28 100.0 32 ............................ GCCCCATTCGCACCATCCCCACCGCTGTTATC 978910 28 100.0 32 ............................ TTCATCTAGAGCCTGCTCCCAGGTGATGGCTT 978970 28 100.0 32 ............................ TGAAACAGTCGGCTAGCAGCGCCAGGACATAG 979030 28 100.0 32 ............................ AATTCCTTCAGGAATTCAAGATTCTCTCCATC 979090 28 100.0 32 ............................ GTGGGCCCGCGGTTGTTTTAGTTCATTTCCTG 979150 28 100.0 32 ............................ CAGTTCGTGATCGACGCTGCATTGATCATCTG 979210 28 100.0 32 ............................ AGAGAACGGTATTCGCGCCCTGGGCAAGCTTT 979270 28 100.0 32 ............................ GTTACACAAACTGCCTCTGAAGGCTGCACTCC 979330 28 100.0 32 ............................ AGCAGATTCAGCTCGAGTACTCCCACCAGGAA 979390 28 100.0 32 ............................ TGGAGAAATCCGCCGGCGAGCCGGTGACAGAG 979450 28 100.0 32 ............................ AAACGGCGCCGGTCATGCGGAACACCAGGCGC 979510 28 100.0 32 ............................ GAAGCGATGTATGCCGAGCTTACGCGCCTGAT 979570 28 100.0 32 ............................ AGCGACACCTTGGCCTTGGCCAGAGGGAAGCG 979630 28 100.0 32 ............................ TCAGAAACGAAAACCCCTGCATTTGCAGGGAT 979690 28 100.0 32 ............................ TTGCCGGCAGCACGCAGGGCCAGGATGCCGCG 979750 28 92.9 32 ..........C.......G......... ATAAAATTTCTACAGGTCCGCAATCCGGTGTA 979810 28 96.4 32 ...............A............ AGGAGTACTTGCTGCTTTGGAGGTTTGGCCAT 979870 28 92.9 87 ...........C.C.............. CCAGTCCTTCAGCGTCCATCGGTGCTGTTCATCTCGATTGCCGAACAGGCAGGCAAAACACAATCCATCATCAATCCATCGGCACCC 979985 27 85.7 0 ...-.........G........G...G. | T [980006] ========== ====== ====== ====== ============================ ======================================================================================= ================== 19 28 98.3 35 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCCCTGGGCCATTTGCTGGCCATCGATTGGCTGGCCGGCATGCGTGACCATGTAGAGATCGGCCAGCCCTGCTCGGTGCCGACGCCGGTGCAGCATCGCCATGTCAGCCGGGTACAGGTCGATAGCAGCCCGGCACGCCTGCGTCGCCGCCTGATCAAGCGCCATGGGTTGACCGAGGACCAAGCCCGCCAGCGCCTGCCCGACAGCGCGGCGAAACGTTGCGACCTGCCGTTCGCGGTGATGCGCAGCCATACCAGCCATCAGCTGTTCAACCTGTTCATCCGCCACGGCCCGCTGCTTGAACAACCACAGCCCGGCACGTTCAACGGCTATGGCCTGAGCTCCAGCGCGACAGTGCCCTGGTTCTGACCCTTTTTTTCGGGTGCAGTGGAGCGCTTTGTAAAATCAATGACTTACAAGGCGCTTCAAAAAAAGGGTGTACAGCAACTTTTAACAGCCTTTCTTTTGAAATTCAGGAGGTTATAGAGAAATTGCTCTA # Right flank : ACTTGATGCACTAATCGCTGGCTGGCCTGGGACTCCCGGGCCGGGCGCGTCTTTGTCACATCCCCTTCATCGGCGCTGGCTAAGGTGGCCTCTTTTGACCATGTCAGGGAGTCACCATGAGCGAGTTCAACCTCGGCCGTCGACGGATCATGCAAATCGCCGGGGCGGGGATGTTGCTGCCCAGCCTGGCGCCGGCGGTGATCGCCTCGGTCAAGGATCGGCCCAAGCTCACCGATGGCGTGCAGTCCGGGGACTTGCAGGGCGATCGGGCGATCATCTGGAGCCGCAGCGACCGCCCGGCGCGGATGGTGGTGGAGTGGGACACCCGCAGCATGTTCACCAACCCGCGACGCTTGGTCTCGCCACTGGCCGATGCCCGCACCGACTTCACCGCCCGGGTGGACCTGAGCGGGCTGCCGGTCAACCAGGCGATTTTTTATCGGGTGACCTTCGAGGACGCCCGCACCGGGGTGGCCAGCGAACCCTGGTTCGGCCATTTG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //