Array 1 957695-956595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077107.1 Methanospirillum hungatei strain GP1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 957694 30 100.0 36 .............................. CGTAACAGCCGCCTGGCGTCGGACTCCCGGATCCTG 957628 30 100.0 37 .............................. AATTACTCGACCGTATGGATCTCGAACTGCTGCAGGT 957561 30 100.0 39 .............................. TCGATAGCCGTGCAGGTGCCGACCTGCATCCCCGGAAGT 957492 30 100.0 36 .............................. AATGTAGATTGAACTGTTTTCGGGATCTATCTAAGA 957426 30 100.0 39 .............................. ACTCATACGACCACTGGGTATACTCATTGCCCATGTCGT 957357 30 100.0 36 .............................. TGTTTTAGCTCCCTGCAGCATGAACGTCACGTCGTG 957291 30 100.0 36 .............................. TTACATCCGCAATGGTTCCGGTTCCGTCGCGTTTTA 957225 30 100.0 35 .............................. AATACAGGCCAGGTTTGTGGCCGCTGCGAACCCAG 957160 30 100.0 38 .............................. AAAAGTGTAATAACAACTATTACAGACGCACAAGGGAA 957092 30 100.0 35 .............................. TATCAAACTGGATATTATGTGTGTTCACATGTGTG 957027 30 100.0 37 .............................. AAGATGGTCGGAGTTACAGAAGGAATATCCATACTTG 956960 30 100.0 37 .............................. GGAGCAGCCCCGTGTTTTCCGTGACGGTTGAATGATG 956893 30 100.0 39 .............................. CTGCAATTGCAGCAAATGTTGGAGTTGAATTTGGTTCAG 956824 30 100.0 36 .............................. ATTGATATCTTATTTAATGTAGATACTGAAGATGAA 956758 30 100.0 37 .............................. TCGTTGATTTTTATCGCTTTATCTGTCAGTGATGTGA 956691 30 100.0 37 .............................. CTCTCGAACCGTGCAGCAGTTGACCATTACGAGGCAG 956624 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 99.8 37 GTTCAAAGTTGACTAAAGTAGGATTGAAAC # Left flank : AAAACACCGTTCTCTTCACCGGAAAGTTTCTTATAAGCGACTTATGTATCTTGAGTGTATCAAAATTGTAAAACACCTACTGGGCCTTAAAAAATATGAACCATTTGAAATATGGTGGTAATTATCATGTTTGTTATTGTGGTATATGATATCAATGTTGATCGGGTCGCAAAAGTGTGTGCATATTTAAGGAAATATTTATACAGGGTTCAAAATTCAGTTTTTGAAGGAGAAATCACCAAAGGACAATTTGCAAGGATGAAGAGTGGTCTTAAATCTATTGTCGTGGATGATGAAGATACAGTAAGGATTTATATCCTTCCTCATGATAATGTAGTAGCGATTGAATCAATTGGAAAAGACATATCGGAGTTTTGCCAGATTATTTAACGTCGTGGATCTTTATATTCCAATAACATTATCTTTGATCAACGACAACATGTTCAAATTAGCCCCTAAATTTTACTTCAATAATGAAATTGATGAATATTTCGGGCTGT # Right flank : CTGGTCCTATACCAAGGATCACTTTTCTTGATAACCTCAACCTGTCCATCATCATCCGGCCGTCATATCTATCCATGAGATTACGGCAATTAATGAATGCCCCGGAATCCAGGGGATGAATCCGCAATACATAAACCCAGCAATCGCTTCCGGAATTCTTCCCATCTCCATAAGACTACAGGCTTTGTTGAACCAGATCTCATCATCATTCGGAATTACCTACAATGCCCGGTCATACAACCGAAGAGCATCCTCCTGAAGTCTAATGCCGGAAAGGCACAACCCGGCGAGGTAAGGACCATGAAAGCCCGGAGAGAGATTTATCGCTTTCGAAAAATTCAGGAAATGCCTCTCCATACTTTTCTTCATTTAAAAATATGGTCGCATATTTACACCATAATGCTGCATCAAAAGGTATTTCATCGATGGCATTTCTGAATATCTCCCTGGCCTCATCCCTCTTCCCGTCCTTTGCAAGCTGAATGCCCCGCTCGGTTACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAGTTGACTAAAGTAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 2654334-2656037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077107.1 Methanospirillum hungatei strain GP1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2654334 37 100.0 36 ..................................... TCATTCAATGCGAAGTGTTGAGACTGCAGTCAGGAC 2654407 37 100.0 36 ..................................... TAAACAGACCTGGGAGAGAAAACCATAACTTTTCTC 2654480 37 100.0 37 ..................................... TGTTCCCGGAGCCGGGATAAAGAAGGTTTATCCTGGT 2654554 37 100.0 35 ..................................... AGCATATACCGGAGTGGCGTTCCCTGCATATTCAA 2654626 37 100.0 37 ..................................... AGTGTTTGCATCTGGTTTTCAGACGTGATATCAACGG 2654700 37 100.0 37 ..................................... CTGTAGAACTTTTGCAACAGCGACCTGTGTTGGTTTC 2654774 37 100.0 36 ..................................... CAACCATTGACGGGCTCAACGAGATCAACACGGATG 2654847 37 100.0 36 ..................................... CCCCGCTATTCGCAAGTAAGGTAACGCCTGTTGTCC 2654920 37 100.0 34 ..................................... AAATTGTGCAGATCTACTCTCTGAAAGATGTGGA 2654991 37 100.0 36 ..................................... TCTCATTACGTGGATGGGCTTTCTGAAGAAGGGGAA 2655064 37 100.0 36 ..................................... ACGTTTGCCTACCCGGATCCGTACCTGGTCGGAGAA 2655137 37 100.0 34 ..................................... TCACAACCCCTATTTTATTGTTGATGACATCCCG 2655208 37 100.0 35 ..................................... GTGACTTTTGCAAGCCCTCCGAAGAGCTCAAAGAA 2655280 37 100.0 36 ..................................... GGGGTTTTTCCCCTGCCAGATTGTACCAATCCAGAG 2655353 37 100.0 36 ..................................... TGATCTAAAAAACCGGATACGATACGCATGTGATTC 2655426 37 100.0 32 ..................................... CAAAACAGTCTTCTGCATCCAATACTATCAAA 2655495 37 100.0 35 ..................................... TGTATACCGCCGTTGATCTCCCCTCGAGAGTTAAC 2655567 37 100.0 36 ..................................... CATGTCAACGTCAACACAAATAGGCGGTTTCAGTGA 2655640 37 100.0 35 ..................................... AATTGTTTGTGTGGTGCAAGAGGGCCTGTAATGGA 2655712 37 100.0 35 ..................................... TCTTTTGTCTGGTATTGAAACTCCCCCGGCGCAGT 2655784 37 100.0 35 ..................................... CAAAACGGATTGCAAAAGCGAGAGATGAACCGGTT 2655856 37 97.3 35 .A................................... TTCAGCAGTTCTCCCCATCTGTTTCATCAATTCGA 2655928 37 97.3 37 .A................................... GCGACATCTGTTAACATCCCAGAAGCAGAAGTGATGA 2656002 36 83.8 0 .A....................A.......A.-..GG | ========== ====== ====== ====== ===================================== ===================================== ================== 24 37 99.1 36 GTTACAGTGAATAAGAAAACCCGATAGGGATTGAAAC # Left flank : CGTTTCCAGAAAAAAGATAATTCAAATCCAAGCGATCCTGCTACGGAAAGCAATATGTGGAGAGCTGAATGGGTATTACCCGTTTCTCTATACAAGGTGATTTGCATGGTTCGGCTGGTGATTACCTATGACATTAGGAAGGATAAGATTAGAAACAAGTTGTTTCGTCTTTTAGAAAGGTATGGTGCATGGAAACAGTATAGTGTGTTTGAACTGGAGATTACTCCGGTACACAGGATTGAACTTTTTCATAGTATTACTGATCTCATTGAGGATTCTGACCGGGTTAGAATATATGAGTTATGTGAACGGTGCCAGGGAAAGATTACTGAGTTTGGAGAGGTTTCTCCAGATAAGATGCACGTAGTAATTTAATGTGGGTTATTTGTTGCGTTCATCGCTAGATATAAGGTAATGGGATGACAATGATCCATGATCGACACCTCTTTTTTCTGGAGCGATAGTCTGTTATATGATTAATACAGACGATTATTGTGGCG # Right flank : GCTTAAATAACGGACATCAGATCAATAAAGAGGGGATTGGGTAGCGAATTTAGATAAAATTCCAGAATCCCACCGATTTTGTTATGAATCGACGGGAATTCAGGAACAACCAAAACACAAATTGCCGGTATGCAGGGAAAATCTCCCGGTTTTGAATAGAATGAGATTACGCGACAAGAATTTGATAATATTCTGCAAATTTTGGATAATCTGCCTTCAGGCACCCAAAATAATTAAGGAAACTTCAGACATTCACCGGATTTTTCCCGATATCTCCAAAGGTGATGTTCAGAGAGAGTGGATATGTGAGTTCTTCTCCTGAAAACAACAACCCTTGATCCCGTTTTCTCTAAAACCGCTGAAGTTTATTCATTCATACCTAAATCCTTCGAAGAAGTATTCAGCCATTTCAGACCAAAAAGAATCGGGATAGCCTGAATATAACTGATGAGACCAGAGTTTGTATCAAATATGTCCCCCAAACGAATATCTGTCAAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTGAATAAGAAAACCCGATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //