Array 1 3846-3223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKEI010000014.1 Desulfovibrio sp. ZJ369 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 3845 35 100.0 38 ................................... CTCACAAAACCGCGCGAAAGCCTTTGAGCCGCCAAGGC 3772 35 100.0 37 ................................... TTTTCGGCGGCTTGCTTGTTTGTGGTGCGATTACTGG 3700 35 100.0 39 ................................... CATTAGCCGTAGTACTTTTTCTTGAACCTCAAATATGGT 3626 35 100.0 38 ................................... TCCTTCAACAACCCCAATATCTCTTCCTTTCTTCCCTC 3553 35 100.0 38 ................................... AGCCTGCCGGTTGAGGCGTCAAAAATTGGCATAACGGC 3480 35 100.0 41 ................................... ATCGCTGCACGATGAACGTTTTCAATACCGATGGCCGTAAT 3404 35 100.0 38 ................................... AGCTTGGCCGGCGCTGGCCGTTTGCGCTGCACTCCTTG 3331 35 100.0 39 ................................... GCACGTTCAGCGGCTCGGCGCTGCTTGCGATTCATCGTC 3257 35 91.4 0 .......C..........G.A.............. | ========== ====== ====== ====== =================================== ========================================= ================== 9 35 99.0 39 GTAAGAAACGACCTGAAATAGAAAGGGATTAAGAC # Left flank : AGGAACAGCGCCGGAAAGAGCGCGAGGCAGCGGAACGCGAGGCGGCACTTGCCGCCCTTTCCCCGGAGGAGCGTGCCATTGCTGAAGTTGCGGCCCCCGATGCCCCGGAGGAGCGCAGTATGGAGCTTTTTGCCAGGCTGGACAGCCTGGAGGGTGACTTGCGGGTAAAGGCGGCGGCTGCCTTGCGTGACTGCTGGCAGCGCCTGGGCAAGTGGCAAGGCAAGCTCTCCCAGAAACAGCAAAAGAAAGTCGCAAAAGTAAAACAGCTTCTCGGCGAGTAGCGCGAACCGTGGCTGTCTTCGGTGGGTTTTGCCAACCTGTTGAAATGAATGAAGATGGCGCGTCTGTCCCGGAGAGGTTCGCGCAAGGAAAAGAGTTTTTTATTTCAGTAGGTTGGCTTGACATGTTCGCCCATGCACGGCTGAAGTTTCATCGTTGCCCTGAAGGTTCGCGCAAGTCAGACAGCCAGGTGCTGTGGAAAAAGGAGTGGGAAGGGAGGA # Right flank : GCTTATCCAAATTCTCCACCATCGCTCTACATAAGTACCTGGTGAGAGCAGATATGCCCATTCCGCCGCTGAAAAATCACATTGTCCTCGTTTCCCGGCAGGCGCTGCCCAGCCTGCTTGGCGCCTCCTTTCCGGGGAGTGGCCCTGTGCATATCCATGCCGTGGTCACCCCTGCCATGAAAGGGGCTGCCCACCTCTTGCGCAAGGCCCTGGAGGCCCGGGGGAGGCAGTGCGCCTTCACGGAGTATCCGCTTGCGGACAGCTCCGACCAGAATGCCATTTACAATGTGCTGGAGGAAATCCGCGCCACATGCGGGAGCGAATCACTGGGCATCAATCTTACAGGCGGCACAAAACTCATGGCGCTGGCAGCGGCCGAGTGGGCCCAGGTATGCGAAGTGCCGGCTTTTTACATTGATACGGATGGGGAACAAGTCATCAGCGTGGGGCGCGACTGGGCCTATGCTCCTTTGCCCGATGTCCTCTCAGTGCGCGATCTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGAAACGACCTGAAATAGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 11821-13924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKEI010000048.1 Desulfovibrio sp. ZJ369 Scaffold47_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11821 29 96.6 32 ............................T TAACGGCTTGATACTTTAGGCGTATCTGACGA 11882 29 100.0 32 ............................. CTGGCGCAGGCACACGGCGGCATAGGTGATAT 11943 29 96.6 32 ............................A TCGTTCCGCCGGAGTTCGGCCACAAGGCAGGC 12004 29 100.0 32 ............................. GCATCTTCGGGATCGTCGCCGTTCTGTATGGC 12065 29 100.0 32 ............................. CTTTTGGAGTATGATGCTGATGCTACTGAATA 12126 29 100.0 33 ............................. TGACACCTGCGGTATGGTCGTGTCAGATTCTCA 12188 29 100.0 32 ............................. ATAACGGGAGAGCAACGCTTGCCGTATGTGTT 12249 29 100.0 32 ............................. TTGAGCCGCACGCTTTGGAAAGGCGAGCAGGA 12310 29 100.0 32 ............................. ACTTAATAAGAAATAACTATCTTGAAAAATTA 12371 29 100.0 32 ............................. CTCACCGAACCAGACGCCACCCTCGTAAGTTC 12432 29 100.0 32 ............................. GCGCAACCCATCGCAGCGTAGTCATGACGTGG 12493 29 100.0 32 ............................. AGATTGCTGCCGCTCGCGCGGCCATTCTTCAA 12554 29 100.0 32 ............................. AGGCGCGCCCGCGCTCGCTAGCGCGGTGGCGC 12615 29 100.0 32 ............................. GACACGTCCGAACGCGGCACAACCGCGCCTCA 12676 29 100.0 32 ............................. CCTGAATATCGGCACCTTTTCGGCGATTTTGA 12737 29 100.0 32 ............................. CATTAAAGCACGTTCACTCATTTTATAGTCTC 12798 29 100.0 32 ............................. GTAATACCAAAATGCAAGACCTCGTTGCGTGC 12859 29 100.0 32 ............................. AGGCATGGCGAAGCCGGCCCGCCCTGGCACCG 12920 29 96.6 32 ............................T ATAAGTAACCTGCCCATACATGTAACAACAAT 12981 29 100.0 32 ............................. CCCTCGCGCCCCCCGTATGCCGCCTACGGCGG 13042 29 96.6 32 ............................C CGAACGTGTGAGGTCATTGCGGGCGGCGTCGA 13103 29 100.0 32 ............................. ATTTTGATCCTGAGGTCACAGACGCACTTTTC 13164 29 100.0 32 ............................. CACCTTGGACTGGAAGGGGTACGCTCGCTTCA 13225 29 100.0 32 ............................. TAACAGGAGATGATGAATCAATAATTCCAGAA 13286 29 100.0 32 ............................. TCCAGTAGGTAAGAACCATCTGCCCCATTTTC 13347 29 100.0 32 ............................. TGATAGACCACCGACAACGGAGCGCGTTTCGG 13408 29 100.0 32 ............................. TGAGAAATAAAAACATGACTGATGCTGAAAAT 13469 29 100.0 32 ............................. CTCCCAGCCCCGGATAGTGTCGTCAATCTCAA 13530 29 100.0 32 ............................. GGGTTCATCATGGCTAATCGCACCAGCAAGCC 13591 29 100.0 32 ............................. ACGCCGCCAGAGCTCCAGACGGCTTGACTGAA 13652 28 93.1 32 .....-......................A GTACAAACGTGTCCTCATCGTGGTCGAAGGTC 13712 29 100.0 32 ............................. TCCGATGCTCGCCTCCAGCGTCCGGAGTATCT 13773 29 100.0 32 ............................. CGTCGTCTTTGGACCCATAGGCTTTTGCTGGA 13834 29 100.0 33 ............................. GCGCTTGCCCAGACACGGAACCGCTAGCACTGC 13896 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTATTCCCCACACGCGTGGGGATGAACCG # Left flank : GCCGCCAAGGCTGCCGCATGAGATGCATCAGCCCTGAGCTTGTATGCTCTTCGTGTAGAGTGGATGATATAAATTTTTTATGAAAGCTACCAGAGTTCAACGCTGTTGGCAAGGCTTTTAATCAATAAAAAACCTATAGCCGTAGCCGAGGCGCGGCAACCTGCCCTCAGCCTGGTCCTCTGCTCGCGGCATTGGTTGCAGAGACTTTACCGGGAAACGCGGCCTTTTTCGTTCGCCATCCGTTGAGGCGCTTTCTTTTCGCTGTGACACCTGAGATTTTCGCGGTCGCGGCATGAGATTTCAGCCCAGGCAGGAAGATTCGGCCCGGGCTCCATCTGCGTGTACGCTCGAAACTGAGAATAAACAGCATTGCGCAAGCCGGCTTGCGCTTGTCCGCAGGCCATGATACGCGAATTGTGGATAGCGCGCAGCCGCGCCGTTACGGCGGTAGTTTTTGAACTGATGAAAATGCTTAATTATTCTTTCTAAATACAGAAAGA # Right flank : ACCTTTGATCAGATTTCAGGCTAGGGCGTGTTAGCACTATCCTGCGCATTCTCAACTATTTTAAAGAGTTCAACGAAAATCCTTTCCCGGCAGAATTACGAGGCAGTGTTCCGAAAAAACAAGACTTTTTCTGATAAGCGTGAACAGGCCCTAGAGCATTTTCACTTTTATTTTATTTAGAAATCGTTTAGATTGCAGAGATGAAATTTGCATCTGAAGAAATCCGAACCAAGGCTGTTCATGCGTATCTTGATGGAAAAGCAACAGCCAGGCAATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //