Array 1 962828-964871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078532.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Colony110 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 962828 29 100.0 32 ............................. GTCNNNNNNNNNNNNNNNNNNNNNNNNNATAT 962889 29 100.0 32 ............................. GTTCGNNNNNNNNNNNNNNNNNNNNNNNNCCT 962950 29 100.0 32 ............................. GGCGCNNNNNNNNNNNNNNNNNNNNNNCACGA 963011 29 100.0 32 ............................. CCAGCGTNNNNNNNNNNNNNNNNNNNNNGCGT 963072 29 100.0 32 ............................. CAGGAGNNNNNNNNNNNNNNNNNNNCTTTTGG 963133 29 100.0 32 ............................. GTCAGGNNNNNNNNNNNNNNNNNNNNNTCCTC 963194 29 100.0 32 ............................. ATTAANNNNNNNNNNNNNNNNNNNCAGGTACA 963255 29 100.0 32 ............................. ACCGNNNNNNNNNNNNNNNNNNNNNNNCCGAT 963316 29 100.0 32 ............................. GCGGCNNNNNNNNNNNNNNNNNNNNCCGGCGC 963377 29 100.0 32 ............................. GCGTNNNNNNNNNNNNNNNNNNNNNNNGCGAT 963438 29 100.0 32 ............................. AAAAAATNNNNNNNNNNNNNNNNNNNGCTGGC 963499 29 100.0 32 ............................. GCAACNNNNNNNNNNNNNNNNNNNNNNNNGTT 963560 29 100.0 32 ............................. AGTTATGTNNNNNNNNNNNNNNNNNNNNTCAG 963621 29 100.0 32 ............................. ATTATNNNNNNNNNNNNNNNNNNNNNNNAGGT 963682 29 100.0 32 ............................. ACCACNNNNNNNNNNNNNNNNNNNNNNTACTG 963743 29 100.0 32 ............................. AAAAAAGNNNNNNNNNNNNNNNNAGAAGATGA 963804 29 100.0 32 ............................. ACGCGNNNNNNNNNNNNNNNNNNNNCACAACA 963865 29 100.0 32 ............................. AAAAAANNNNNNNNNNNNNNNNNNNNNNNTGA 963926 29 100.0 32 ............................. ACGCGNNNNNNNNNNNNNNNNNNNNNNCAACA 963987 29 100.0 32 ............................. CCGGANNNNNNNNNNNNNNNNNNNNNNGCCGG 964048 29 100.0 32 ............................. ATCTTNNNNNNNNNNNNNNNNNNNNNNGGATC 964109 29 100.0 33 ............................. GCTTNNNNNNNNNNNNNNNNNNNNNNNNCCAGC 964171 29 100.0 32 ............................. GTGATCGCGAGTGCNNNNNNNNNNNNNNAAAT 964232 29 100.0 32 ............................. GTGAGGTTNNNNNNNNNNNNNNNNNNNAATGA 964293 29 100.0 32 ............................. AGGCTCNNNNNNNNNNNNNNNNGGAACGCGAC 964354 29 100.0 32 ............................. CGACGCGNNNNNNNNNNNNNNNNNCACCGAGC 964415 29 96.6 33 ...........................T. GGTTAACNNNNNNNNNNNNNNNNNNNNNGCAGC 964477 29 100.0 32 ............................. ACCGCGTGCGNNNNNNNNNNNNNNNNNNGGAT 964538 29 100.0 32 ............................. GTANNNNNNNNNNNNNNNNNNNNNNNNNATTC 964599 29 100.0 32 ............................. CTACTTGNNNNNNNNNNNNNNNNNNNATTTTG 964660 29 100.0 32 ............................. CGCGNNNNNNNNNNNNNNNNNNNNNNNNNGAG 964721 29 100.0 32 ............................. CGCCTNNNNNNNNNNNNNNNNNNNNNNNNGAG 964782 29 100.0 32 ............................. CCGGTNNNNNNNNNNNNNNNNNNNNNNNCCGA 964843 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNACGTGTTCCCCGCGCCAACAAGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 981439-984213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078532.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Colony110 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 981439 29 100.0 32 ............................. CGGTNNNNNNNNNNNNNNNNNNNTATCCTCTG 981500 29 100.0 32 ............................. GAAGNNNNNNNNNNNNNNNNNNNNNNNNNGTT 981561 29 100.0 32 ............................. CCCGCANNNNNNNNNNNNNNNNNNNNNNACCT 981622 29 100.0 32 ............................. GCGCNNNNNNNNNNNNNNNNNNNNNNNACGAT 981683 29 100.0 32 ............................. CCAANNNNNNNNNNNNNNNNNNNNNTCATATT 981744 29 100.0 32 ............................. AAGGNNNNNNNNNNNNNNNNNNNNNNGTCATT 981805 29 100.0 32 ............................. GTAGGNNNNNNNNNNNNNNNNNNNNCGTGAAC 981866 29 100.0 32 ............................. GTGGCAANNNNNNNNNNNNNNNNNNNNGAGTC 981927 29 100.0 32 ............................. GAGGGNNNNNNNNNNNNNNNNNNNNNNCGGGC 981988 29 100.0 32 ............................. TGGNNNNNNNNNNNNNNNNNNNNNNNNNCACG 982049 29 100.0 32 ............................. GCAACCANNNNNNNNNNNNNNNNNNNNNCACC 982110 29 100.0 32 ............................. GGAGNNNNNNNNNNNNNNNNNNNNNNNTGTTG 982171 29 100.0 32 ............................. AATGNNNNNNNNNNNNNNNNNNNNNCAAAAGG 982232 29 100.0 32 ............................. TGTTNNNNNNNNNNNNNNNNNNNNNNNCAGCG 982293 29 100.0 32 ............................. TGGATGATNNNNNNNNNNNNNNNNNCGCTGCG 982354 29 100.0 32 ............................. TTTAAGNNNNNNNNNNNNNNNNNNNNNCATGG 982415 29 100.0 32 ............................. CCATATNNNNNNNNNNNNNNNNNNNNNNGAAA 982476 29 100.0 32 ............................. GCGGGTGANNNNNNNNNNNNNNNNNNNCACGA 982537 29 100.0 32 ............................. CCGTNNNNNNNNNNNNNNNNNNNNNNNNNGGT 982598 29 100.0 32 ............................. GCCCNNNNNNNNNNNNNNNNNNNNNNCCACCA 982659 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 982720 29 100.0 32 ............................. CGTTCNNNNNNNNNNNNNNNNNNNNNNNNTTT 982781 29 100.0 32 ............................. GTGTNNNNNNNNNNNNNNNNNNNNNNNNNAAA 982842 29 100.0 32 ............................. GCAGCNNNNNNNNNNNNNNNNNNNTACCGACA 982903 29 100.0 32 ............................. GTGTGNNNNNNNNNNNNNNNNNNNNNTGTTCT 982964 29 100.0 32 ............................. AGCCCNNNNNNNNNNNNNNNNNNNNTGTCGGT 983025 29 100.0 32 ............................. CCATGTTTGNNNNNNNNNNNNNNNNNNAAGCC 983086 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 983147 29 100.0 32 ............................. CGGCCNNNNNNNNNNNNNNNNNNNNNNGACCA 983208 29 100.0 32 ............................. GGCAGATNNNNNNNNNNNNNNNNNNNNNGGTG 983269 29 100.0 32 ............................. CGAATNNNNNNNNNNNNNNNNNNNNNNGTAAG 983330 29 100.0 32 ............................. GAANNNNNNNNNNNNNNNNNNNNNNNNGGAGC 983391 29 100.0 32 ............................. AAATTANNNNNNNNNNNNNNNNNNNNNNAATG 983452 29 100.0 32 ............................. GAANNNNNNNNNNNNNNNNNNNNNNNNNGAGC 983513 29 100.0 32 ............................. AAATTNNNNNNNNNNNNNNNNNNNNCGCAATG 983574 29 100.0 32 ............................. ACTCAGGCGNNNNNNNNNNNNNNNNNNNNGTT 983635 29 100.0 32 ............................. CTGGGNNNNNNNNNNNNNNNNNNNNNNNGCGG 983696 29 100.0 32 ............................. AGATNNNNNNNNNNNNNNNNNNNNNNTGAACT 983757 29 100.0 32 ............................. GGAGNNNNNNNNNNNNNNNNNNNNNACTGGAC 983818 29 100.0 32 ............................. CCAGCANNNNNNNNNNNNNNNNNNNNNTGCCT 983879 29 100.0 32 ............................. TGGATNNNNNNNNNNNNNNNNNNNNNNNNGCG 983940 29 100.0 32 ............................. CGGCCNNNNNNNNNNNNNNNNNNNNNNGACCA 984001 29 100.0 93 ............................. GCTAAAANNNNNNNNNNNNNNNNNNNNNNNATGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGC 984123 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 984184 29 96.6 0 A............................ | A [984210] ========== ====== ====== ====== ============================= ============================================================================================= ================== 45 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //