Array 1 77379-76629 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHGX01000012.1 Cronobacter sakazakii strain MOD1_LR704 LR704_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77378 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 77318 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 77258 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 77198 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 77137 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 77077 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 77017 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 76957 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 76897 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 76837 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 76777 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 76717 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 76657 28 85.7 0 ......................C.T.TC | T [76635] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3136-2933 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHGX01000009.1 Cronobacter sakazakii strain MOD1_LR704 LR704_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 3135 36 100.0 48 .................................... GTTTCGCAGGCGAATGGTGGGTGCGCTTACGCTTACCCACCCTACGGC 3051 36 100.0 47 .................................... ATCTGTCGGTAGTTGGTGGATGTTCTGGCGTTTACCTACCCTGGGAA 2968 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 3 36 100.0 48 AGGTTTTGTAGGGCAGGTAAGCGGAGCGCACCTGCC # Left flank : CGCCCGGTGTATGACGTGCTGGTGCGCCGTCTTGGTGCTTCCTTCATGCAATATTGCCTGCGCCCGGAAATCGGGAAAGTTGAGATTGCGCCGTTCGCCTATATGCGCGGACGTACCTTTGAGAACGCCGTCGTGATTCTGGACGAGGCCCAGAACGTGACAGCCGCGCAGATGAAGATGTTTTTAACCCGCCTCGGGGAGAACGTGACCGTGATAGTCAATGGCGACATCACCCAGTGCGATTTGCCGGCGGGCGTGCAGTCCGGCCTGAGCGACGCGCTGGCGCGTTTTGAGGAAGATGAGATGATTGGCATCGTGCGGTTCGGTAAAGCCGATTGCGTGCGTTCCGCACTCTGCCAGCGAACGCTTAACGCGTACGATTAAGCTCGCCTGATATCACCACGTAAAAGCCCAACGTGTGTTGGGCTTTTTTGTTTTTATCTTTTGCGTTTTCTCTGTGGCTGGAAGGTGGGTGCGCTTGCGCTTACCCACCCTACGGC # Right flank : GTTTTCCTGGCGCGATATAAAAACAAAAAAGCCCGTACGTTCGCTCAGGCTCTTTCTTTGAATATGGCGGTGAGGGAGGGATTCGAACCCTCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCATATTGTCTTACTGCCTCGCGTAGCGGGGCAACGGGGCGCTACTATAGGGATCTGCATGAAAACGGTCAAGCAGATTTTTTTCTTTCTTTATCGTTCGGTTAAGGGTTAAACGAAATGGCGTTTTCTCCTGCAAAACCCGCCATTACAGCCCTCAATACCGCCTGATATCCCTTCATTCGCTTCGCTTATCGCATTTTCTGTACCAGGCTTAAACCACAACTATGAGACAGAGAATGTGGAGCACTATGAAAGAGCGAAATCGTACTATCGGCATCGCGCCTTATGGCGGATCGGCGGGCGGCTGGGGCGCACTGAAGGCCGTTGCTGACGCTATCCGCGGCCAGATG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGTTTTGTAGGGCAGGTAAGCGGAGCGCACCTGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 134524-136199 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHGX01000015.1 Cronobacter sakazakii strain MOD1_LR704 LR704_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 134524 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 134585 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 134646 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 134707 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 134768 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 134829 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 134890 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 134951 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 135012 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 135073 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 135134 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 135195 29 96.6 32 .C........................... AGATTTACGAAATAGACCCGATTCAGTGCATC 135256 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 135317 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 135378 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 135439 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 135501 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 135562 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 135623 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 135684 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 135745 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 135806 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 135867 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 135928 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 135989 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 136050 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 136111 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 136172 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCTCAGGCTCTTAGCGCCTGTCACCCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 162417-164276 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHGX01000015.1 Cronobacter sakazakii strain MOD1_LR704 LR704_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162417 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 162478 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 162539 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 162600 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 162661 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 162722 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 162783 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 162844 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 162905 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 162966 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 163027 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 163088 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 163149 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 163210 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 163271 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 163332 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 163393 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 163454 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 163515 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 163576 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 163637 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 163698 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 163759 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 163820 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 163881 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 163942 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 164003 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 164064 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 164126 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 164187 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 164248 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //