Array 1 97611-98432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZN01000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST4650 ST4650_00049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97611 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 97672 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 97733 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 97794 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 97855 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 97917 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 97978 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 98039 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 98100 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 98161 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 98222 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 98283 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 98344 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 98405 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114565-116480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZN01000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST4650 ST4650_00049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 114565 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 114626 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 114687 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 114748 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 114809 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 114870 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 114932 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 114993 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 115060 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 115127 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 115188 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 115249 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 115310 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 115371 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 115432 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 115493 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 115554 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 115615 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 115676 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 115737 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 115799 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 115860 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [115902] 115902 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 115963 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116024 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 116085 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 116146 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 116207 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 116268 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 116329 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 116390 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 116451 29 96.6 0 A............................ | A [116477] ========== ====== ====== ====== ============================= ====================================== ================== 32 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGCCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //