Array 1 12496-11008 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNOG01000076.1 Neisseria meningitidis strain S00-1278 08-645_contig83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12495 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 12429 36 97.2 30 ............A....................... AATCAGACCGACTTTACAACGAAGGTTTGA 12363 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 12297 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 12231 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 12165 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 12099 36 100.0 30 .................................... CCGACCGTGGGAACGACGGTATAGTGGATT 12033 36 100.0 30 .................................... TAAAAAGATACTCATTCTGCCTCCGTATTA 11967 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 11901 36 100.0 30 .................................... TAACGATTGAAAATGAGTACGCATTAAGTA 11835 36 100.0 30 .................................... GAACACTTGAGCAATTTAATACGCGAACAA 11769 36 100.0 30 .................................... TGATTCTCGCCTATATGAAACGGAACAGTT 11703 36 100.0 30 .................................... TCTATCTTAATTTCTCTTTGTTCTTCTTTA 11637 36 100.0 30 .................................... CATTGCGCCCATTTTGTCTATCCGAACAAT 11571 36 100.0 30 .................................... ACCACCGCCGCTTATATAGAAAAGCTGTAA 11505 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 11439 36 100.0 30 .................................... TAATTGATTTTTAAGGTTAATCAGTTTTTG 11373 36 100.0 30 .................................... CTATTTTCCTGCACCTACAACCCCCGAACG 11307 36 100.0 30 .................................... CTTTCTGTGCGATGTATTGAAAAAGCTGAG 11241 36 100.0 30 .................................... ATGCTGGATACGGCATTGATGCTGCAACTT 11175 36 100.0 30 .................................... TTGCAATCCAAGGCTTCAAAATGGCTTGGA 11109 36 100.0 30 .................................... CGCCTGACCTAATATAACCATATGGAAAAA 11043 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //